assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	1	699987-700135	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA	NA|551aa|up_9|NZ_CP027587.1_686395_688048_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP027587.1_688191_689091_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP027587.1_689585_690281_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP027587.1_690706_692365_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP027587.1_692361_693318_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP027587.1_693468_694584_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP027587.1_694580_696527_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP027587.1_696599_696824_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP027587.1_697146_697467_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP027587.1_697497_699774_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP027587.1_700518_700737_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP027587.1_701021_701726_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP027587.1_701767_703489_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP027587.1_703489_705256_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP027587.1_705378_706344_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP027587.1_706888_707383_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1356aa|down_6|NZ_CP027587.1_707517_711585_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP027587.1_711739_712351_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP027587.1_712361_713705_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP027587.1_713795_715088_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	2	869588-869679	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA|91aa|up_6|NZ_CP027587.1_860174_860447_-,NA|26aa|up_1|NZ_CP027587.1_866865_866943_+,NA	NA|116aa|up_9|NZ_CP027587.1_857867_858215_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|127aa|up_8|NZ_CP027587.1_858211_858592_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|69aa|up_7|NZ_CP027587.1_859712_859919_+	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|91aa|up_6|NZ_CP027587.1_860174_860447_-	NA	NA|178aa|up_5|NZ_CP027587.1_860606_861140_+	COG3772, COG3772, Phage-related lysozyme (muraminidase) [General function prediction only]	NA|200aa|up_4|NZ_CP027587.1_864605_865205_+	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|405aa|up_3|NZ_CP027587.1_865269_866484_+	pfam08400, phage_tail_N, Prophage tail fibre N-terminal	NA|90aa|up_2|NZ_CP027587.1_866485_866755_+	pfam06820, Phage_fiber_C, Putative prophage tail fibre C-terminus	NA|26aa|up_1|NZ_CP027587.1_866865_866943_+	NA	NA|338aa|up_0|NZ_CP027587.1_867157_868171_+	pfam13678, Peptidase_M85, NFkB-p65-degrading zinc protease	NA|443aa|down_0|NZ_CP027587.1_869792_871121_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP027587.1_871141_871636_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP027587.1_871646_872237_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP027587.1_872246_873047_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP027587.1_873054_873441_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP027587.1_873452_874145_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP027587.1_874144_875236_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP027587.1_875523_876162_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP027587.1_876201_880164_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|500aa|down_9|NZ_CP027587.1_880585_882085_+	PRK15419, PRK15419, sodium/proline symporter PutP
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	3	1462857-1462980	3	CRISPRCasFinder	no	DEDDh	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA|30aa|down_7|NZ_CP027587.1_1471877_1471967_+	NA|471aa|up_9|NZ_CP027587.1_1449684_1451097_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027587.1_1451653_1451863_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027587.1_1452318_1452945_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027587.1_1452965_1455068_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|405aa|up_5|NZ_CP027587.1_1455142_1456356_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|231aa|up_4|NZ_CP027587.1_1456339_1457032_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|262aa|up_3|NZ_CP027587.1_1457760_1458546_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027587.1_1458549_1459362_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027587.1_1459373_1460978_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|405aa|up_0|NZ_CP027587.1_1461376_1462590_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|419aa|down_0|NZ_CP027587.1_1463294_1464551_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027587.1_1464591_1465965_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027587.1_1466179_1466821_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027587.1_1466860_1468009_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027587.1_1468300_1469512_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027587.1_1469624_1470557_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027587.1_1470553_1471579_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027587.1_1471877_1471967_+	NA	NA|390aa|down_8|NZ_CP027587.1_1472132_1473302_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027587.1_1473447_1474029_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	4	2141794-2141927	4	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA	NA|368aa|up_9|NZ_CP027587.1_2131257_2132361_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|156aa|up_8|NZ_CP027587.1_2132357_2132825_-	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|132aa|up_7|NZ_CP027587.1_2132821_2133217_-	pfam05523, FdtA, WxcM-like, C-terminal	NA|288aa|up_6|NZ_CP027587.1_2133220_2134084_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|362aa|up_5|NZ_CP027587.1_2134083_2135169_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_4|NZ_CP027587.1_2135541_2136435_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_3|NZ_CP027587.1_2136677_2137673_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_2|NZ_CP027587.1_2137830_2139225_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP027587.1_2139235_2140456_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP027587.1_2140452_2141733_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP027587.1_2142008_2143487_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP027587.1_2143488_2144883_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP027587.1_2144937_2146308_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP027587.1_2146500_2147937_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP027587.1_2147939_2149163_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP027587.1_2149159_2149639_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP027587.1_2149641_2150607_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP027587.1_2150609_2151731_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP027587.1_2151757_2152306_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP027587.1_2152321_2153068_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	5	2385330-2385456	5	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCATCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA	NA|950aa|up_9|NZ_CP027587.1_2362390_2365240_-	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|259aa|up_8|NZ_CP027587.1_2365514_2366291_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP027587.1_2366295_2367945_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP027587.1_2367945_2372340_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP027587.1_2372483_2373107_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|543aa|up_4|NZ_CP027587.1_2373103_2374732_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP027587.1_2374939_2377567_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP027587.1_2377713_2378436_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1245aa|up_1|NZ_CP027587.1_2378563_2382298_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP027587.1_2382993_2385279_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP027587.1_2385512_2386643_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP027587.1_2386642_2386897_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP027587.1_2386950_2387601_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP027587.1_2388063_2389140_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|36aa|down_4|NZ_CP027587.1_2389144_2389252_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP027587.1_2390765_2392394_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP027587.1_2392383_2393643_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP027587.1_2393639_2394830_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_8|NZ_CP027587.1_2395023_2395926_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP027587.1_2395966_2396770_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	6	2916437-2917014	1,1,6	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,8	9	TypeI-E	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA	NA|209aa|up_9|NZ_CP027587.1_2907692_2908319_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|NZ_CP027587.1_2908312_2909074_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|NZ_CP027587.1_2909054_2910104_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|NZ_CP027587.1_2910100_2910580_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_5|NZ_CP027587.1_2910579_2911290_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_4|NZ_CP027587.1_2911308_2911620_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_3|NZ_CP027587.1_2911812_2912136_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_2|NZ_CP027587.1_2912185_2912791_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_1|NZ_CP027587.1_2912790_2914218_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_0|NZ_CP027587.1_2914219_2915128_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	cas2|98aa|down_0|NZ_CP027587.1_2917110_2917404_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP027587.1_2917400_2918324_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027587.1_2918320_2918971_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027587.1_2918952_2919699_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|NZ_CP027587.1_2919709_2920783_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|178aa|down_5|NZ_CP027587.1_2920797_2921331_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	NA|405aa|down_6|NZ_CP027587.1_2922406_2923620_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|51aa|down_7|NZ_CP027587.1_2926436_2926589_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027587.1_2926853_2927588_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027587.1_2927662_2929375_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	7	2943289-2943374	7	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	GGTTTATCCCGCTGGCGCGGGGAAC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA|47aa|down_1|NZ_CP027587.1_2944525_2944666_+	NA|424aa|up_9|NZ_CP027587.1_2931932_2933204_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027587.1_2933194_2933455_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027587.1_2933471_2934047_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027587.1_2934194_2935055_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027587.1_2935051_2935831_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP027587.1_2935808_2937146_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027587.1_2937239_2938694_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027587.1_2938763_2939549_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027587.1_2939866_2941144_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027587.1_2941170_2942649_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027587.1_2943715_2944387_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027587.1_2944525_2944666_+	NA	NA|291aa|down_2|NZ_CP027587.1_2944679_2945552_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027587.1_2945611_2946910_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027587.1_2946997_2948635_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027587.1_2948862_2949654_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027587.1_2949724_2950060_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027587.1_2950059_2950308_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027587.1_2950385_2952620_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027587.1_2952667_2953969_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	8	5004407-5004522	8	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA	NA|126aa|up_9|NZ_CP027587.1_4990412_4990790_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP027587.1_4990792_4991614_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP027587.1_4991610_4992600_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP027587.1_4992599_4993886_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP027587.1_4993938_4996293_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP027587.1_4996547_4997363_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP027587.1_4997479_4998139_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP027587.1_4998150_5001057_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP027587.1_5001220_5003572_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP027587.1_5003646_5004342_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP027587.1_5004541_5006044_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP027587.1_5006054_5007755_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP027587.1_5008093_5008972_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP027587.1_5009057_5009822_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP027587.1_5009891_5010590_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP027587.1_5010573_5012184_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP027587.1_5012159_5013143_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP027587.1_5013306_5014962_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP027587.1_5015050_5015182_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP027587.1_5015283_5016462_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_003018375.1_ASM301837v1	NZ_CP027587	Escherichia coli strain 2013C-4974 chromosome, complete genome	9	5067237-5067368	9	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	Orphan	TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	36	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,RT	NA,NA	NA|401aa|up_9|NZ_CP027587.1_5052073_5053276_-	PRK10573, PRK10573, protein transport protein HofC	NA|462aa|up_8|NZ_CP027587.1_5053265_5054651_-	PRK10436, PRK10436, hypothetical protein; Provisional	NA|147aa|up_7|NZ_CP027587.1_5054660_5055101_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|298aa|up_6|NZ_CP027587.1_5055303_5056197_-	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|184aa|up_5|NZ_CP027587.1_5056284_5056836_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|457aa|up_4|NZ_CP027587.1_5057728_5059099_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|255aa|up_3|NZ_CP027587.1_5059641_5060406_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|888aa|up_2|NZ_CP027587.1_5060566_5063230_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|631aa|up_1|NZ_CP027587.1_5063244_5065137_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|475aa|up_0|NZ_CP027587.1_5065461_5066886_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|866aa|down_0|NZ_CP027587.1_5069164_5071762_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|down_1|NZ_CP027587.1_5071936_5072299_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|265aa|down_2|NZ_CP027587.1_5072335_5073130_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|289aa|down_3|NZ_CP027587.1_5073145_5074012_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|down_4|NZ_CP027587.1_5074117_5074465_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|517aa|down_5|NZ_CP027587.1_5074630_5076181_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|179aa|down_6|NZ_CP027587.1_5078822_5079359_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_7|NZ_CP027587.1_5079399_5080062_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_8|NZ_CP027587.1_5080170_5081097_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|down_9|NZ_CP027587.1_5081093_5081864_+	PRK15066, PRK15066, inner membrane transport permease; Provisional
