assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018355.1_ASM301835v1	NZ_CP027584	Escherichia coli strain 00-3076 chromosome, complete genome	1	232445-232541	1	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP027584.1_220325_221687_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP027584.1_221743_223045_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP027584.1_223066_224212_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP027584.1_224340_225126_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP027584.1_225136_226372_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP027584.1_226393_227443_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP027584.1_227758_229426_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP027584.1_229435_230695_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP027584.1_230705_231521_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP027584.1_231517_232411_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP027584.1_232605_233673_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP027584.1_233669_234179_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP027584.1_234296_235019_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP027584.1_235021_235516_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP027584.1_235689_237075_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP027584.1_237110_237632_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP027584.1_237739_237952_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP027584.1_237953_238820_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP027584.1_239300_239843_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP027584.1_240062_240755_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_003018355.1_ASM301835v1	NZ_CP027584	Escherichia coli strain 00-3076 chromosome, complete genome	2	793046-793137	2	CRISPRCasFinder	no		DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCATCAGAAGCAGGTAAAAAAGGTGG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|263aa|up_7|NZ_CP027584.1_782882_783671_-,NA|237aa|up_5|NZ_CP027584.1_786406_787117_-,NA|108aa|up_4|NZ_CP027584.1_787665_787989_-,NA|142aa|up_3|NZ_CP027584.1_788150_788576_-,NA|97aa|up_2|NZ_CP027584.1_788575_788866_-,NA|97aa|up_1|NZ_CP027584.1_789185_789476_-,NA|70aa|down_9|NZ_CP027584.1_803676_803886_+	NA|202aa|up_9|NZ_CP027584.1_780585_781191_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|548aa|up_8|NZ_CP027584.1_781242_782886_+	pfam07508, Recombinase, Recombinase	NA|263aa|up_7|NZ_CP027584.1_782882_783671_-	NA	NA|727aa|up_6|NZ_CP027584.1_783827_786008_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|237aa|up_5|NZ_CP027584.1_786406_787117_-	NA	NA|108aa|up_4|NZ_CP027584.1_787665_787989_-	NA	NA|142aa|up_3|NZ_CP027584.1_788150_788576_-	NA	NA|97aa|up_2|NZ_CP027584.1_788575_788866_-	NA	NA|97aa|up_1|NZ_CP027584.1_789185_789476_-	NA	NA|221aa|up_0|NZ_CP027584.1_790849_791512_-	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam)	NA|443aa|down_0|NZ_CP027584.1_793250_794579_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|165aa|down_1|NZ_CP027584.1_794599_795094_-	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|197aa|down_2|NZ_CP027584.1_795104_795695_-	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|267aa|down_3|NZ_CP027584.1_795704_796505_-	TIGR03611, RutD, pyrimidine utilization protein D	NA|129aa|down_4|NZ_CP027584.1_796512_796899_-	TIGR03610, RutC, pyrimidine utilization protein C	NA|231aa|down_5|NZ_CP027584.1_796910_797603_-	TIGR03614, RutB, pyrimidine utilization protein B	NA|364aa|down_6|NZ_CP027584.1_797602_798694_-	TIGR03612, RutA, pyrimidine utilization protein A	NA|213aa|down_7|NZ_CP027584.1_798981_799620_+	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|1321aa|down_8|NZ_CP027584.1_799659_803622_-	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|70aa|down_9|NZ_CP027584.1_803676_803886_+	NA
GCF_003018355.1_ASM301835v1	NZ_CP027584	Escherichia coli strain 00-3076 chromosome, complete genome	3	2751005-2751644	3,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,TCCGGTTTATCCCCGCTGGCGCGGGGAACAC,GCGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,31,30	0	0	NA	NA	I-E:I-E:I-E:I-E	10,10,4,4	10	TypeI-E	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP027584.1_2742816_2743578_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027584.1_2743558_2744608_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027584.1_2744604_2745084_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027584.1_2745083_2745794_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027584.1_2745812_2746124_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027584.1_2746317_2746641_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027584.1_2746690_2747296_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027584.1_2747295_2748723_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027584.1_2748724_2749633_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027584.1_2749884_2750922_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027584.1_2751740_2752034_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP027584.1_2752030_2752954_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027584.1_2752950_2753601_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027584.1_2753582_2754329_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027584.1_2754339_2755395_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP027584.1_2755409_2755946_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027584.1_2755942_2757505_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027584.1_2757602_2760302_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027584.1_2760495_2760648_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027584.1_2760912_2761647_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003018355.1_ASM301835v1	NZ_CP027584	Escherichia coli strain 00-3076 chromosome, complete genome	4	2767146-2768333	4,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	19,19,19	19	TypeI-E	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|121aa|down_3|NZ_CP027584.1_2771073_2771436_+	cas5|249aa|up_9|NZ_CP027584.1_2753582_2754329_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|up_8|NZ_CP027584.1_2754339_2755395_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_7|NZ_CP027584.1_2755409_2755946_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_6|NZ_CP027584.1_2755942_2757505_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_5|NZ_CP027584.1_2757602_2760302_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_4|NZ_CP027584.1_2760495_2760648_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_3|NZ_CP027584.1_2760912_2761647_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_2|NZ_CP027584.1_2761720_2763433_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_1|NZ_CP027584.1_2763432_2765232_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_0|NZ_CP027584.1_2765547_2765913_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|224aa|down_0|NZ_CP027584.1_2768672_2769344_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP027584.1_2769516_2770119_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP027584.1_2770132_2771038_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP027584.1_2771073_2771436_+	NA	NA|433aa|down_4|NZ_CP027584.1_2771491_2772790_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP027584.1_2772877_2774515_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP027584.1_2774742_2775534_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP027584.1_2775604_2775940_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP027584.1_2775939_2776188_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP027584.1_2776265_2778500_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
