assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018335.1_ASM301833v1	NZ_CP027579	Escherichia coli strain 2013C-4282 chromosome, complete genome	1	810097-810220	1	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|75aa|down_7|NZ_CP027579.1_818806_819031_-,NA|30aa|down_8|NZ_CP027579.1_819117_819207_+	NA|471aa|up_9|NZ_CP027579.1_799535_800948_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027579.1_801504_801714_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027579.1_802169_802796_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027579.1_802816_804919_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|220aa|up_5|NZ_CP027579.1_804922_805582_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027579.1_805645_806314_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027579.1_806310_807096_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|272aa|up_2|NZ_CP027579.1_807099_807915_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP027579.1_807920_809531_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027579.1_809656_809962_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027579.1_810535_811792_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027579.1_811832_813206_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027579.1_813420_814062_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027579.1_814101_815250_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027579.1_815540_816752_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027579.1_816864_817797_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027579.1_817793_818819_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP027579.1_818806_819031_-	NA	NA|30aa|down_8|NZ_CP027579.1_819117_819207_+	NA	NA|390aa|down_9|NZ_CP027579.1_819372_820542_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
GCF_003018335.1_ASM301833v1	NZ_CP027579	Escherichia coli strain 2013C-4282 chromosome, complete genome	2	1562064-1562155	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|70aa|up_9|NZ_CP027579.1_1551314_1551524_-,NA|113aa|down_2|NZ_CP027579.1_1564330_1564669_-	NA|70aa|up_9|NZ_CP027579.1_1551314_1551524_-	NA	NA|1321aa|up_8|NZ_CP027579.1_1551578_1555541_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027579.1_1555580_1556219_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|383aa|up_6|NZ_CP027579.1_1556449_1557598_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027579.1_1557597_1558290_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027579.1_1558301_1558688_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027579.1_1558695_1559496_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027579.1_1559505_1560096_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027579.1_1560106_1560601_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027579.1_1560621_1561950_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027579.1_1562578_1563175_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027579.1_1563195_1563423_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|113aa|down_2|NZ_CP027579.1_1564330_1564669_-	NA	NA|414aa|down_3|NZ_CP027579.1_1564866_1566108_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|418aa|down_4|NZ_CP027579.1_1566402_1567656_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_5|NZ_CP027579.1_1567913_1568834_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_6|NZ_CP027579.1_1568833_1569139_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_7|NZ_CP027579.1_1569290_1569890_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_8|NZ_CP027579.1_1569886_1572433_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_9|NZ_CP027579.1_1572432_1573605_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
GCF_003018335.1_ASM301833v1	NZ_CP027579	Escherichia coli strain 2013C-4282 chromosome, complete genome	3	2345686-2345828	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GTAGGCCGGATAAGGCGTTTATGCCGCATCCGGCAGTCGTGC	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|514aa|up_9|NZ_CP027579.1_2333845_2335387_+	COG3851, UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	NA|439aa|up_8|NZ_CP027579.1_2335459_2336776_+	cd17488, MFS_UhpC, Membrane sensor protein UhpC of the Major Facilitator Superfamily of transporters	NA|344aa|up_7|NZ_CP027579.1_2336772_2337804_+	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|693aa|up_6|NZ_CP027579.1_2337872_2339951_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|349aa|up_5|NZ_CP027579.1_2339962_2341009_+	PRK11432, fbpC, ferric ABC transporter ATP-binding protein	NA|92aa|up_4|NZ_CP027579.1_2341168_2341444_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP027579.1_2341478_2342588_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP027579.1_2342680_2343514_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP027579.1_2343740_2344280_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP027579.1_2344381_2345593_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|340aa|down_0|NZ_CP027579.1_2345901_2346921_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP027579.1_2346917_2347868_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP027579.1_2347864_2348674_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP027579.1_2348683_2349550_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP027579.1_2349567_2350512_-	PRK13370, mhpB, 3-carboxyethylcatechol 2,3-dioxygenase	NA|555aa|down_5|NZ_CP027579.1_2350513_2352178_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP027579.1_2352254_2353202_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|263aa|down_7|NZ_CP027579.1_2353304_2354093_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|318aa|down_8|NZ_CP027579.1_2354112_2355066_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|361aa|down_9|NZ_CP027579.1_2355102_2356185_+	PRK09526, lacI, lac repressor; Reviewed
GCF_003018335.1_ASM301833v1	NZ_CP027579	Escherichia coli strain 2013C-4282 chromosome, complete genome	4	4658273-4659216	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,15,15	15	Unclear	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|434aa|up_9|NZ_CP027579.1_4645723_4647025_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP027579.1_4647072_4649307_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_7|NZ_CP027579.1_4649401_4650193_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP027579.1_4650420_4652058_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP027579.1_4652145_4653444_+	PRK00077, eno, enolase; Provisional	NA|298aa|up_4|NZ_CP027579.1_4653503_4654397_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP027579.1_4654402_4655551_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|313aa|up_2|NZ_CP027579.1_4655565_4656504_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP027579.1_4656487_4657090_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP027579.1_4657262_4657934_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027579.1_4659805_4661284_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027579.1_4661310_4662588_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027579.1_4662906_4663692_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027579.1_4663761_4665216_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027579.1_4665309_4666647_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027579.1_4666624_4667404_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027579.1_4667400_4668261_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027579.1_4668406_4668982_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027579.1_4668998_4669259_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027579.1_4669249_4670521_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003018335.1_ASM301833v1	NZ_CP027579	Escherichia coli strain 2013C-4282 chromosome, complete genome	5	4684870-4685203	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,28,29	0	0	NA	NA	I-E:I-E:I-E	4,5,4	5	TypeI-E	DEDDh,c2c9_V-U4,DinG,RT,cas3,WYL,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|245aa|up_9|NZ_CP027579.1_4674864_4675599_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP027579.1_4675862_4676015_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|up_7|NZ_CP027579.1_4676253_4678911_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP027579.1_4679008_4680571_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP027579.1_4680567_4681104_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP027579.1_4681118_4682174_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP027579.1_4682184_4682931_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027579.1_4682912_4683563_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP027579.1_4683559_4684483_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027579.1_4684479_4684773_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027579.1_4685224_4686262_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027579.1_4686514_4687423_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027579.1_4687424_4688852_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027579.1_4688851_4689457_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027579.1_4689506_4689830_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027579.1_4690023_4690335_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027579.1_4690353_4691064_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027579.1_4691063_4691543_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027579.1_4691539_4692589_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027579.1_4692569_4693331_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
