assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018215.1_ASM301821v1	NZ_CP027371	Escherichia coli strain 2015C-3905 chromosome, complete genome	1	878018-878885	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	13,14,14	14	TypeI-F	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|551aa|up_9|NZ_CP027371.1_864426_866079_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP027371.1_866222_867122_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP027371.1_867616_868312_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP027371.1_868737_870396_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP027371.1_870392_871349_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP027371.1_871499_872615_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP027371.1_872611_874558_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP027371.1_874630_874855_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP027371.1_875177_875498_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP027371.1_875528_877805_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP027371.1_879057_880041_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP027371.1_880037_883271_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NZ_CP027371.1_883601_884909_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|down_3|NZ_CP027371.1_884905_885829_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|NZ_CP027371.1_885839_886841_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP027371.1_886851_887406_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_6|NZ_CP027371.1_888148_888367_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_7|NZ_CP027371.1_888651_889356_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_8|NZ_CP027371.1_889397_891119_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_9|NZ_CP027371.1_891119_892886_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
GCF_003018215.1_ASM301821v1	NZ_CP027371	Escherichia coli strain 2015C-3905 chromosome, complete genome	2	2198804-2198937	2	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|401aa|up_9|NZ_CP027371.1_2187032_2188235_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|378aa|up_8|NZ_CP027371.1_2188234_2189368_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|293aa|up_7|NZ_CP027371.1_2189364_2190243_-	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs	NA|346aa|up_6|NZ_CP027371.1_2190245_2191283_-	TIGR04130, L-fucosamine_synthetase, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase	NA|335aa|up_5|NZ_CP027371.1_2191336_2192341_-	pfam11380, Stealth_CR2, Stealth protein CR2, conserved region 2	NA|348aa|up_4|NZ_CP027371.1_2192330_2193374_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|298aa|up_3|NZ_CP027371.1_2193772_2194666_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_2|NZ_CP027371.1_2194840_2196235_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP027371.1_2196245_2197466_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP027371.1_2197462_2198743_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP027371.1_2199018_2200497_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP027371.1_2200498_2201893_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP027371.1_2201947_2203318_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP027371.1_2203510_2204947_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP027371.1_2204949_2206173_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP027371.1_2206169_2206649_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP027371.1_2206651_2207617_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP027371.1_2207619_2208741_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP027371.1_2208766_2209315_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP027371.1_2209330_2210077_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_003018215.1_ASM301821v1	NZ_CP027371	Escherichia coli strain 2015C-3905 chromosome, complete genome	3	2900229-2900806	2,2,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,8,8	9	TypeI-E	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP027371.1_2892102_2892864_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027371.1_2892844_2893894_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027371.1_2893890_2894370_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027371.1_2894369_2895080_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027371.1_2895098_2895410_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027371.1_2895603_2895927_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027371.1_2895976_2896582_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027371.1_2896581_2898009_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027371.1_2898010_2898919_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027371.1_2899170_2900208_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027371.1_2900902_2901196_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027371.1_2901195_2902116_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027371.1_2902112_2902763_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027371.1_2902744_2903491_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027371.1_2903501_2904557_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP027371.1_2904568_2905105_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP027371.1_2905101_2906664_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027371.1_2906761_2909461_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027371.1_2909653_2909806_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027371.1_2910070_2910805_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003018215.1_ASM301821v1	NZ_CP027371	Escherichia coli strain 2015C-3905 chromosome, complete genome	4	2926505-2926899	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAAC	29,27,27	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027371.1_2928048_2928189_+	NA|424aa|up_9|NZ_CP027371.1_2915148_2916420_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027371.1_2916410_2916671_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027371.1_2916687_2917263_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027371.1_2917410_2918271_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027371.1_2918267_2919047_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP027371.1_2919024_2920362_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027371.1_2920455_2921910_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027371.1_2921979_2922765_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027371.1_2923083_2924361_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027371.1_2924387_2925866_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027371.1_2927238_2927910_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027371.1_2928048_2928189_+	NA	NA|291aa|down_2|NZ_CP027371.1_2928202_2929075_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027371.1_2929134_2930433_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027371.1_2930520_2932158_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027371.1_2932385_2933177_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027371.1_2933247_2933583_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027371.1_2933582_2933831_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027371.1_2933908_2936143_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027371.1_2936190_2937492_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003018215.1_ASM301821v1	NZ_CP027371	Escherichia coli strain 2015C-3905 chromosome, complete genome	5	4844527-4844642	5	CRISPRCasFinder	no		DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,c2c9_V-U4,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|126aa|up_9|NZ_CP027371.1_4830531_4830909_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP027371.1_4830911_4831733_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP027371.1_4831729_4832719_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP027371.1_4832718_4834005_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP027371.1_4834057_4836412_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP027371.1_4836666_4837482_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP027371.1_4837598_4838258_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP027371.1_4838269_4841176_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP027371.1_4841340_4843692_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP027371.1_4843766_4844462_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP027371.1_4844661_4846164_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP027371.1_4846174_4847875_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP027371.1_4848213_4849092_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP027371.1_4849177_4849942_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP027371.1_4850043_4850742_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP027371.1_4850725_4852336_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP027371.1_4852311_4853295_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP027371.1_4853458_4855114_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP027371.1_4855202_4855334_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP027371.1_4855435_4856614_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
