assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	1	947528-947619	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|186aa|down_1|NZ_CP027445.1_950962_951520_+,NA|96aa|down_2|NZ_CP027445.1_951521_951809_+,NA|72aa|down_3|NZ_CP027445.1_951808_952024_+,NA|108aa|down_5|NZ_CP027445.1_952464_952788_+,NA|236aa|down_6|NZ_CP027445.1_953346_954054_+,NA|70aa|down_7|NZ_CP027445.1_954072_954282_+,NA|263aa|down_9|NZ_CP027445.1_956722_957511_+	NA|503aa|up_9|NZ_CP027445.1_935510_937019_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP027445.1_937264_941227_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027445.1_941266_941905_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027445.1_942192_943284_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027445.1_943283_943976_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027445.1_943987_944374_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027445.1_944381_945182_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027445.1_945191_945782_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027445.1_945792_946287_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|369aa|up_0|NZ_CP027445.1_946307_947414_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|190aa|down_0|NZ_CP027445.1_948432_949002_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|186aa|down_1|NZ_CP027445.1_950962_951520_+	NA	NA|96aa|down_2|NZ_CP027445.1_951521_951809_+	NA	NA|72aa|down_3|NZ_CP027445.1_951808_952024_+	NA	NA|96aa|down_4|NZ_CP027445.1_952020_952308_+	pfam13392, HNH_3, HNH endonuclease	NA|108aa|down_5|NZ_CP027445.1_952464_952788_+	NA	NA|236aa|down_6|NZ_CP027445.1_953346_954054_+	NA	NA|70aa|down_7|NZ_CP027445.1_954072_954282_+	NA	NA|724aa|down_8|NZ_CP027445.1_954394_956566_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|263aa|down_9|NZ_CP027445.1_956722_957511_+	NA
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	2	1230255-1230403	2,1	CRISPRCasFinder,PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	ATTTCTAAGCTGCCTGTACGGCAGTGAAC,ATTTCTAAGCTGCCTGTACGGCAGTGAAC	29,29	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|94aa|down_2|NZ_CP027445.1_1234136_1234418_-	NA|431aa|up_9|NZ_CP027445.1_1215300_1216593_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP027445.1_1216684_1218028_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP027445.1_1218038_1218650_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP027445.1_1218804_1222872_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP027445.1_1223006_1223501_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP027445.1_1224045_1225011_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP027445.1_1225133_1226900_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP027445.1_1226900_1228622_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP027445.1_1228663_1229368_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP027445.1_1229652_1229871_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP027445.1_1230614_1232891_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP027445.1_1232921_1233242_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|94aa|down_2|NZ_CP027445.1_1234136_1234418_-	NA	NA|119aa|down_3|NZ_CP027445.1_1236075_1236432_-	COG3747, COG3747, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|147aa|down_4|NZ_CP027445.1_1236720_1237161_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|99aa|down_5|NZ_CP027445.1_1237160_1237457_-	TIGR01560, phage-related_hypothetical_protein, uncharacterized phage protein (possible DNA packaging)	NA|113aa|down_6|NZ_CP027445.1_1237453_1237792_-	COG5614, COG5614, Bacteriophage head-tail adaptor [General function prediction only]	NA|392aa|down_7|NZ_CP027445.1_1237788_1238964_-	COG4695, COG4695, Phage-related protein [Function unknown]	NA|186aa|down_8|NZ_CP027445.1_1239001_1239559_-	COG3740, COG3740, Phage head maturation protease [General function prediction only]	NA|386aa|down_9|NZ_CP027445.1_1239614_1240772_-	COG4653, COG4653, Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only]
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	3	2108261-2108376	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|393aa|up_9|NZ_CP027445.1_2096320_2097499_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP027445.1_2097600_2097732_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP027445.1_2097820_2099476_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP027445.1_2099639_2100623_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP027445.1_2100598_2102209_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP027445.1_2102192_2102891_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP027445.1_2102960_2103725_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP027445.1_2103810_2104689_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP027445.1_2105027_2106728_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP027445.1_2106738_2108241_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP027445.1_2108440_2109136_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP027445.1_2109210_2111562_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP027445.1_2111725_2114632_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|272aa|down_3|NZ_CP027445.1_2115418_2116234_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_4|NZ_CP027445.1_2116488_2118843_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_5|NZ_CP027445.1_2118895_2120182_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_6|NZ_CP027445.1_2120181_2121171_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_7|NZ_CP027445.1_2121167_2121989_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_8|NZ_CP027445.1_2121991_2122369_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|down_9|NZ_CP027445.1_2122375_2123218_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	4	2131288-2131420	2	PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|126aa|up_9|NZ_CP027445.1_2121991_2122369_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP027445.1_2122375_2123218_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP027445.1_2123295_2123775_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP027445.1_2123966_2125829_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP027445.1_2125821_2126352_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP027445.1_2126459_2127791_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP027445.1_2127849_2128137_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP027445.1_2128133_2129420_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP027445.1_2129470_2130412_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP027445.1_2130426_2131197_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP027445.1_2131669_2133184_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP027445.1_2133214_2134357_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP027445.1_2134485_2135703_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP027445.1_2135776_2137330_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP027445.1_2137438_2138224_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP027445.1_2138229_2138820_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP027445.1_2138905_2139301_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP027445.1_2139561_2142783_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP027445.1_2142800_2143949_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP027445.1_2144404_2145226_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	5	2366447-2366559	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	CGGATGCGGCGTGAACGCCTTATCCGAC	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|52aa|down_5|NZ_CP027445.1_2373596_2373752_-	NA|421aa|up_9|NZ_CP027445.1_2352951_2354214_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_8|NZ_CP027445.1_2354692_2355712_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_7|NZ_CP027445.1_2355715_2356279_-	PRK09825, idnK, gluconokinase	NA|344aa|up_6|NZ_CP027445.1_2356495_2357527_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_5|NZ_CP027445.1_2357550_2358315_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_4|NZ_CP027445.1_2358379_2359699_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_3|NZ_CP027445.1_2359765_2360764_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|361aa|up_2|NZ_CP027445.1_2362460_2363543_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP027445.1_2363542_2364643_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP027445.1_2364909_2366421_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP027445.1_2366667_2367111_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP027445.1_2367110_2369966_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|168aa|down_2|NZ_CP027445.1_2371393_2371897_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_3|NZ_CP027445.1_2371942_2372359_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_4|NZ_CP027445.1_2372520_2373525_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|52aa|down_5|NZ_CP027445.1_2373596_2373752_-	NA	NA|151aa|down_6|NZ_CP027445.1_2375348_2375801_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP027445.1_2375945_2376539_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP027445.1_2376609_2377323_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|45aa|down_9|NZ_CP027445.1_2378129_2378264_+	pfam08052, PyrBI_leader, PyrBI operon leader peptide
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	6	3654561-3654681	5	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTG	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|55aa|down_0|NZ_CP027445.1_3654751_3654916_-	NA|115aa|up_9|NZ_CP027445.1_3642281_3642626_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027445.1_3642815_3643754_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027445.1_3643852_3644842_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027445.1_3644863_3646195_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027445.1_3646220_3647429_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027445.1_3647462_3649757_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027445.1_3649770_3650160_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027445.1_3650231_3651596_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027445.1_3651870_3653202_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027445.1_3653229_3654540_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027445.1_3654751_3654916_-	NA	NA|234aa|down_1|NZ_CP027445.1_3654938_3655640_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027445.1_3655744_3656641_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027445.1_3656691_3657048_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027445.1_3657289_3657655_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027445.1_3657947_3658934_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027445.1_3659003_3659486_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027445.1_3659581_3659881_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027445.1_3659870_3660275_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027445.1_3660277_3660583_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	7	4073796-4073879	6	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	GTTCCCCGCGCCAGCGGGGATAA	23	0	0	NA	NA	I-E	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|447aa|up_9|NZ_CP027445.1_4058816_4060157_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_8|NZ_CP027445.1_4060388_4063145_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_7|NZ_CP027445.1_4063201_4064503_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP027445.1_4064550_4066785_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_5|NZ_CP027445.1_4066862_4067111_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_4|NZ_CP027445.1_4067110_4067446_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_3|NZ_CP027445.1_4067516_4068308_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP027445.1_4068535_4070173_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP027445.1_4070260_4071559_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP027445.1_4072782_4073454_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|426aa|down_0|NZ_CP027445.1_4075433_4076711_-	cd06174, MFS, Major Facilitator Superfamily	NA|485aa|down_1|NZ_CP027445.1_4077856_4079311_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_2|NZ_CP027445.1_4079404_4080742_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_3|NZ_CP027445.1_4080719_4081499_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_4|NZ_CP027445.1_4081495_4082356_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP027445.1_4082503_4083079_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP027445.1_4083095_4083356_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|122aa|down_7|NZ_CP027445.1_4084694_4085060_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_8|NZ_CP027445.1_4085375_4087175_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_9|NZ_CP027445.1_4087174_4088887_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	8	4100293-4100383	7	CRISPRCasFinder	no	cse2gr11,cas7,cas5,cas6e,cas2	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG	30	0	0	NA	NA	I-E	1	1	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA	NA|600aa|up_9|NZ_CP027445.1_4085375_4087175_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_8|NZ_CP027445.1_4087174_4088887_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_7|NZ_CP027445.1_4088960_4089695_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_6|NZ_CP027445.1_4089959_4090112_+	pfam01848, HOK_GEF, Hok/gef family	NA|405aa|up_5|NZ_CP027445.1_4092287_4093501_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cse2gr11|178aa|up_4|NZ_CP027445.1_4095975_4096509_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|up_3|NZ_CP027445.1_4096523_4097597_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP027445.1_4097607_4098354_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP027445.1_4098335_4098986_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027445.1_4099903_4100197_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027445.1_4100464_4101502_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027445.1_4101753_4102662_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027445.1_4102663_4104091_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027445.1_4104090_4104696_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027445.1_4104745_4105069_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027445.1_4105262_4105574_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027445.1_4105592_4106303_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027445.1_4106302_4106782_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027445.1_4106778_4107828_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027445.1_4107808_4108570_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003018075.1_ASM301807v1	NZ_CP027445	Escherichia coli strain 2013C-3492 chromosome, complete genome	9	4869789-4869925	8	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	Orphan	CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,WYL,RT,csa3,cse2gr11,cas7,cas5,cas6e,cas2	NA,NA|389aa|down_5|NZ_CP027445.1_4876579_4877746_+	NA|249aa|up_9|NZ_CP027445.1_4858650_4859397_+	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|183aa|up_8|NZ_CP027445.1_4859412_4859961_+	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|374aa|up_7|NZ_CP027445.1_4859986_4861108_+	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|322aa|up_6|NZ_CP027445.1_4861110_4862076_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|160aa|up_5|NZ_CP027445.1_4862078_4862558_+	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|408aa|up_4|NZ_CP027445.1_4862554_4863778_+	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|479aa|up_3|NZ_CP027445.1_4863780_4865217_+	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|457aa|up_2|NZ_CP027445.1_4865409_4866780_+	PRK15414, PRK15414, phosphomannomutase	NA|465aa|up_1|NZ_CP027445.1_4866834_4868229_+	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|493aa|up_0|NZ_CP027445.1_4868230_4869709_+	PRK10459, PRK10459, MOP flippase family protein	NA|427aa|down_0|NZ_CP027445.1_4869985_4871266_+	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|407aa|down_1|NZ_CP027445.1_4871262_4872483_+	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|465aa|down_2|NZ_CP027445.1_4872493_4873888_+	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|298aa|down_3|NZ_CP027445.1_4874062_4874956_+	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|434aa|down_4|NZ_CP027445.1_4875276_4876578_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|389aa|down_5|NZ_CP027445.1_4876579_4877746_+	NA	NA|261aa|down_6|NZ_CP027445.1_4877742_4878525_+	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis	NA|341aa|down_7|NZ_CP027445.1_4878590_4879613_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|362aa|down_8|NZ_CP027445.1_4879609_4880695_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|345aa|down_9|NZ_CP027445.1_4880721_4881756_+	TIGR04130, L-fucosamine_synthetase, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase
