assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003017765.1_ASM301776v1	NZ_CP027323	Escherichia coli strain 2013C-3033 chromosome, complete genome	1	474359-474504	1	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK,RT	NA,NA	NA|50aa|up_9|NZ_CP027323.1_463338_463488_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP027323.1_463654_464428_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP027323.1_464427_465117_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP027323.1_465119_466178_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP027323.1_466178_466997_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP027323.1_467151_468147_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP027323.1_468187_469141_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP027323.1_469324_470377_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP027323.1_470452_471886_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP027323.1_472068_474330_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP027323.1_474563_475847_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_CP027323.1_475998_476475_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_CP027323.1_476533_477823_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_CP027323.1_477909_478950_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_CP027323.1_478946_480101_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_CP027323.1_480087_480843_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_CP027323.1_480835_481513_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_CP027323.1_482091_484113_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_CP027323.1_484304_485213_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_CP027323.1_485609_486599_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_003017765.1_ASM301776v1	NZ_CP027323	Escherichia coli strain 2013C-3033 chromosome, complete genome	2	1375875-1375998	2	CRISPRCasFinder	no	DEDDh	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK,RT	NA,NA|30aa|down_7|NZ_CP027323.1_1384893_1384983_+	NA|471aa|up_9|NZ_CP027323.1_1365328_1366741_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027323.1_1367297_1367507_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027323.1_1367962_1368589_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027323.1_1368609_1370712_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027323.1_1370715_1371363_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027323.1_1371426_1372095_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027323.1_1372091_1372877_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027323.1_1372880_1373693_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027323.1_1373704_1375309_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027323.1_1375434_1375740_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|411aa|down_0|NZ_CP027323.1_1376335_1377568_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027323.1_1377608_1378982_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027323.1_1379196_1379838_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027323.1_1379877_1381026_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027323.1_1381316_1382528_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027323.1_1382640_1383573_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027323.1_1383569_1384595_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027323.1_1384893_1384983_+	NA	NA|390aa|down_8|NZ_CP027323.1_1385148_1386318_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027323.1_1386463_1387045_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003017765.1_ASM301776v1	NZ_CP027323	Escherichia coli strain 2013C-3033 chromosome, complete genome	3	2118061-2118205	3	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK	Orphan	ACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGGCGCGTCTTATC	49	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK,RT	NA,NA	NA|331aa|up_9|NZ_CP027323.1_2106892_2107885_-	cd02062, Nitro_FMN_reductase, nitroreductase family protein	NA|178aa|up_8|NZ_CP027323.1_2107899_2108433_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|293aa|up_7|NZ_CP027323.1_2108437_2109316_-	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|300aa|up_6|NZ_CP027323.1_2109373_2110273_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_5|NZ_CP027323.1_2110272_2111358_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_4|NZ_CP027323.1_2111730_2112624_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_3|NZ_CP027323.1_2112866_2113862_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_2|NZ_CP027323.1_2114019_2115414_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP027323.1_2115424_2116645_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP027323.1_2116641_2117922_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP027323.1_2118295_2119774_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP027323.1_2119775_2121170_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP027323.1_2121224_2122595_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP027323.1_2122787_2124224_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP027323.1_2124226_2125450_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP027323.1_2125446_2125926_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP027323.1_2125928_2126894_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP027323.1_2126896_2128018_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP027323.1_2128043_2128592_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP027323.1_2128607_2129354_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_003017765.1_ASM301776v1	NZ_CP027323	Escherichia coli strain 2013C-3033 chromosome, complete genome	4	2939059-2939636	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cas8e,cas3	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP027323.1_2930871_2931633_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027323.1_2931613_2932663_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027323.1_2932659_2933139_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027323.1_2933138_2933849_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027323.1_2933867_2934179_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027323.1_2934372_2934696_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027323.1_2934745_2935351_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027323.1_2935350_2936778_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027323.1_2936779_2937688_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027323.1_2937939_2938977_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027323.1_2939732_2940026_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027323.1_2940025_2940946_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027323.1_2940942_2941593_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027323.1_2941574_2942321_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027323.1_2942331_2943387_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas8e|521aa|down_5|NZ_CP027323.1_2943934_2945497_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP027323.1_2945594_2948294_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|NZ_CP027323.1_2948487_2948640_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027323.1_2948904_2949639_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027323.1_2949712_2951425_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003017765.1_ASM301776v1	NZ_CP027323	Escherichia coli strain 2013C-3033 chromosome, complete genome	5	2965339-2965611	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Unclear	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cas8e,PD-DExK,RT	NA,NA|47aa|down_1|NZ_CP027323.1_2966760_2966901_+	NA|424aa|up_9|NZ_CP027323.1_2953982_2955254_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027323.1_2955244_2955505_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027323.1_2955521_2956097_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027323.1_2956244_2957105_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027323.1_2957101_2957881_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP027323.1_2957858_2959196_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027323.1_2959289_2960744_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027323.1_2960813_2961599_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027323.1_2961917_2963195_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027323.1_2963221_2964700_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027323.1_2965950_2966622_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027323.1_2966760_2966901_+	NA	NA|291aa|down_2|NZ_CP027323.1_2966914_2967787_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027323.1_2967846_2969145_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027323.1_2969232_2970870_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027323.1_2971097_2971889_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027323.1_2971959_2972295_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027323.1_2972294_2972543_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027323.1_2972620_2974855_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027323.1_2974902_2976204_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
