assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003017555.1_ASM301755v1	NZ_CP027307	Escherichia coli strain 2015C-3108 chromosome, complete genome	1	39725-40119	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACC	29,29,26	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	NA|47aa|up_1|NZ_CP027307.1_38434_38575_-,NA	NA|919aa|up_9|NZ_CP027307.1_26319_29076_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|745aa|up_8|NZ_CP027307.1_30480_32715_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP027307.1_32792_33041_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP027307.1_33040_33376_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP027307.1_33446_34238_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP027307.1_34465_36103_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP027307.1_36190_37489_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP027307.1_37548_38421_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP027307.1_38434_38575_-	NA	NA|224aa|up_0|NZ_CP027307.1_38713_39385_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027307.1_40757_42236_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027307.1_42261_43539_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027307.1_43857_44643_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027307.1_44712_46167_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027307.1_46260_47598_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027307.1_47575_48355_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027307.1_48351_49212_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027307.1_49359_49935_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027307.1_49951_50212_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027307.1_50202_51474_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003017555.1_ASM301755v1	NZ_CP027307	Escherichia coli strain 2015C-3108 chromosome, complete genome	2	65821-66093	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	NA,NA	NA|245aa|up_9|NZ_CP027307.1_55817_56552_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP027307.1_56816_56969_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP027307.1_57162_59862_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP027307.1_59959_61522_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP027307.1_61518_62058_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP027307.1_62069_63125_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP027307.1_63135_63882_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027307.1_63863_64514_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP027307.1_64510_65431_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027307.1_65430_65724_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027307.1_66174_67212_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027307.1_67463_68372_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027307.1_68373_69801_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027307.1_69800_70406_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027307.1_70455_70779_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027307.1_70972_71284_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027307.1_71302_72013_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027307.1_72012_72492_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027307.1_72488_73538_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027307.1_73518_74280_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003017555.1_ASM301755v1	NZ_CP027307	Escherichia coli strain 2015C-3108 chromosome, complete genome	3	1322917-1323040	3	CRISPRCasFinder	no	DEDDh	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	NA,NA|30aa|down_7|NZ_CP027307.1_1331936_1332026_+	NA|471aa|up_9|NZ_CP027307.1_1312369_1313782_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027307.1_1314338_1314548_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027307.1_1315003_1315630_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027307.1_1315650_1317753_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027307.1_1317756_1318404_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027307.1_1318467_1319136_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|252aa|up_3|NZ_CP027307.1_1319132_1319888_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027307.1_1319922_1320735_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027307.1_1320746_1322351_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027307.1_1322476_1322782_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027307.1_1323354_1324611_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027307.1_1324651_1326025_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027307.1_1326239_1326881_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027307.1_1326920_1328069_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027307.1_1328359_1329571_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027307.1_1329683_1330616_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027307.1_1330612_1331638_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027307.1_1331936_1332026_+	NA	NA|390aa|down_8|NZ_CP027307.1_1332191_1333361_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027307.1_1333506_1334088_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003017555.1_ASM301755v1	NZ_CP027307	Escherichia coli strain 2015C-3108 chromosome, complete genome	4	2179507-2179598	4	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	NA|70aa|up_9|NZ_CP027307.1_2168757_2168967_-,NA|422aa|down_1|NZ_CP027307.1_2189030_2190296_-,NA|149aa|down_3|NZ_CP027307.1_2190567_2191014_-,NA|219aa|down_4|NZ_CP027307.1_2191016_2191673_-,NA|134aa|down_5|NZ_CP027307.1_2191766_2192168_-,NA|206aa|down_8|NZ_CP027307.1_2193422_2194040_-,NA|93aa|down_9|NZ_CP027307.1_2194045_2194324_-	NA|70aa|up_9|NZ_CP027307.1_2168757_2168967_-	NA	NA|1321aa|up_8|NZ_CP027307.1_2169021_2172984_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027307.1_2173023_2173662_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027307.1_2173949_2175041_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027307.1_2175040_2175733_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027307.1_2175744_2176131_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027307.1_2176138_2176939_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027307.1_2176948_2177539_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027307.1_2177549_2178044_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027307.1_2178064_2179393_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|2794aa|down_0|NZ_CP027307.1_2180579_2188961_-	pfam18799, LPD5, Large polyvalent protein-associated domain 5	NA|422aa|down_1|NZ_CP027307.1_2189030_2190296_-	NA	NA|84aa|down_2|NZ_CP027307.1_2190306_2190558_-	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein	NA|149aa|down_3|NZ_CP027307.1_2190567_2191014_-	NA	NA|219aa|down_4|NZ_CP027307.1_2191016_2191673_-	NA	NA|134aa|down_5|NZ_CP027307.1_2191766_2192168_-	NA	NA|47aa|down_6|NZ_CP027307.1_2192224_2192365_-	PRK09759, PRK09759, type I toxin-antitoxin system toxin HokA	NA|245aa|down_7|NZ_CP027307.1_2192597_2193332_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|206aa|down_8|NZ_CP027307.1_2193422_2194040_-	NA	NA|93aa|down_9|NZ_CP027307.1_2194045_2194324_-	NA
GCF_003017555.1_ASM301755v1	NZ_CP027307	Escherichia coli strain 2015C-3108 chromosome, complete genome	5	2569567-2569711	5	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	NA|248aa|up_8|NZ_CP027307.1_2561392_2562136_+,NA	NA|230aa|up_9|NZ_CP027307.1_2560518_2561208_+	pfam06323, Phage_antiter_Q, Phage antitermination protein Q	NA|248aa|up_8|NZ_CP027307.1_2561392_2562136_+	NA	NA|53aa|up_7|NZ_CP027307.1_2562221_2562380_+	pfam13064, DUF3927, Protein of unknown function (DUF3927)	NA|617aa|up_6|NZ_CP027307.1_2562678_2564529_+	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase	NA|69aa|up_5|NZ_CP027307.1_2564976_2565183_+	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|66aa|up_4|NZ_CP027307.1_2565182_2565380_+	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|405aa|up_3|NZ_CP027307.1_2565385_2566599_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|137aa|up_2|NZ_CP027307.1_2566582_2566993_+	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|359aa|up_1|NZ_CP027307.1_2567006_2568083_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP027307.1_2568217_2569501_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP027307.1_2569734_2571996_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP027307.1_2572178_2573612_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|318aa|down_2|NZ_CP027307.1_2574922_2575876_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP027307.1_2575916_2576912_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP027307.1_2577066_2577885_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP027307.1_2577885_2578944_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP027307.1_2578946_2579636_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP027307.1_2579635_2580409_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP027307.1_2580574_2580724_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP027307.1_2580852_2581641_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
GCF_003017555.1_ASM301755v1	NZ_CP027307	Escherichia coli strain 2015C-3108 chromosome, complete genome	6	4956556-4956673	6	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas14i	NA,NA|55aa|down_0|NZ_CP027307.1_4956746_4956911_-	NA|115aa|up_9|NZ_CP027307.1_4944277_4944622_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027307.1_4944810_4945749_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027307.1_4945847_4946837_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027307.1_4946858_4948190_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027307.1_4948215_4949424_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027307.1_4949457_4951752_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027307.1_4951765_4952155_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027307.1_4952226_4953591_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027307.1_4953865_4955197_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027307.1_4955224_4956535_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027307.1_4956746_4956911_-	NA	NA|234aa|down_1|NZ_CP027307.1_4956933_4957635_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027307.1_4957739_4958636_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027307.1_4958686_4959043_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027307.1_4959284_4959650_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027307.1_4959942_4960929_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027307.1_4960998_4961481_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027307.1_4961576_4961876_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027307.1_4961865_4962270_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027307.1_4962272_4962578_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
