The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	736103	743924	2707649		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|736103_737159_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|737158_737845_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|737819_738293_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|738635_739076_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|739355_739940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|740038_740752_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|740755_741175_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|741176_741845_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|742195_742789_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217797.1|742772_743924_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	755895	770547	2707649		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663024.1|755895_756954_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|757248_757791_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|758391_759309_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031835073.1|759399_759501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|759578_761084_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|761424_761925_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|761944_762811_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|763611_764010_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|763972_766078_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|766195_767167_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|767680_767836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|767874_768846_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245573.1|768832_769789_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|769785_770547_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	1014359	1022832	2707649		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1014359_1014842_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010406.1|1014828_1015953_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1015956_1016661_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1016660_1016924_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1016925_1017597_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1017589_1019779_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483712.1|1019757_1021242_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	7.2e-45
WP_000030811.1|1021234_1022263_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238670.1|1022265_1022832_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 4
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	1563873	1572185	2707649	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1563873_1564659_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1564784_1565675_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1565684_1567031_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683933.1|1567144_1568245_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624580.1|1568247_1568925_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1569055_1570162_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217247.1|1570385_1572185_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 5
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	1641616	1650659	2707649	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1641616_1642135_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594995.1|1642156_1644430_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1644632_1646912_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1647186_1647447_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1647465_1648605_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019167.1|1648627_1649653_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1649654_1650659_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	1776680	1842757	2707649	protease,tRNA	Staphylococcus_phage(95.83%)	67	NA	NA
WP_049311740.1|1776680_1783241_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.7	4.2e-307
WP_000836463.1|1783566_1783878_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	6.3e-52
WP_001108727.1|1783899_1786314_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1786604_1787786_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526540.1|1787895_1788849_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	1.4e-78
WP_000764419.1|1788845_1789409_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1789528_1789930_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1790501_1791329_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1791331_1791451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1791562_1792564_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1792685_1793150_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1793162_1794344_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493878.1|1794354_1794987_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	2.2e-112
WP_000384185.1|1794993_1796025_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1796517_1798020_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1798542_1798857_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1798856_1800149_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1800235_1801090_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1801365_1801590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671324.1|1801788_1802259_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.7	6.7e-82
WP_001153742.1|1802371_1802815_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1802801_1803245_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_106669544.1|1803540_1804176_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1804615_1805329_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091441.1|1805588_1805891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1806146_1806512_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1806508_1806862_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453301.1|1808858_1809692_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.0e-157
WP_000366170.1|1809903_1810812_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	3.7e-137
WP_000933822.1|1810936_1812130_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109917.1|1812501_1814094_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_072361841.1|1814346_1815093_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	2.9e-143
WP_000672015.1|1815097_1815571_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1815636_1815894_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778537.1|1815890_1816892_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
WP_000348369.1|1816896_1818375_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.0	1.6e-283
WP_072361838.1|1818533_1818989_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	6.7e-79
WP_001789021.1|1819291_1819942_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_000070647.1|1820022_1821018_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.0	2.1e-69
WP_000669019.1|1821093_1821720_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.6	2.9e-96
WP_049311638.1|1821760_1822102_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000595156.1|1822598_1822775_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	1.3e-25
WP_000864138.1|1822972_1823530_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	3.5e-77
WP_000375476.1|1823900_1824077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1824087_1824471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000747802.1|1825155_1825602_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1826052_1826148_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1826270_1826372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000695818.1|1826719_1827094_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001792823.1|1827115_1827520_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000742594.1|1827672_1828116_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072558.1|1828763_1829882_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
WP_106669545.1|1829874_1831431_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	5.2e-288
WP_031865257.1|1831595_1831730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038715.1|1831794_1832514_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	5.4e-131
WP_001038757.1|1832664_1833381_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
WP_011447030.1|1833482_1833590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1833538_1834258_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038867.1|1834378_1835098_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1835155_1835878_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039430.1|1836002_1836710_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	3.6e-127
WP_001092769.1|1837673_1838252_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	74.0	5.8e-67
WP_025174387.1|1838723_1838942_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	9.2e-26
WP_000550252.1|1839197_1839671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543844.1|1839675_1840467_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782446.1|1840836_1841820_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_106669546.1|1841821_1842757_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.3	5.7e-173
>prophage 7
NZ_CP020354	Staphylococcus aureus strain FORC59 chromosome, complete genome	2707649	1977901	1994038	2707649	integrase,terminase,coat	Staphylococcus_phage(77.78%)	23	1977039:1977058	1992060:1992079
1977039:1977058	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_001035612.1|1977901_1978456_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
WP_000022955.1|1978675_1978846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033842523.1|1979073_1979997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033842524.1|1980010_1980604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033842525.1|1980596_1981088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072466814.1|1981426_1981996_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.3e-100
WP_000358778.1|1981992_1982334_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_072466815.1|1982336_1982864_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.3	4.1e-88
WP_054192753.1|1983092_1983671_-	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	96.4	1.2e-80
WP_001288441.1|1983705_1984050_-	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_072466816.1|1984759_1985401_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.9	6.5e-112
WP_000356927.1|1985397_1985778_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	3.8e-67
WP_033842989.1|1986107_1987808_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	95.4	4.5e-309
WP_033842991.1|1987821_1988691_-	mobile element-associated protein	NA	Q4ZE74	Staphylococcus_phage	95.5	3.2e-162
WP_001103939.1|1988754_1989072_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
WP_001058492.1|1989074_1989284_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_000708434.1|1989276_1989423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|1989419_1989737_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|1989741_1989960_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|1990132_1990807_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179346.1|1990820_1991993_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.9	1.3e-219
WP_000240642.1|1992061_1993678_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
1992060:1992079	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|1993753_1994038_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 1
NZ_CP020355	Staphylococcus aureus strain FORC59 plasmid pFORC59, complete sequence	35269	350	11244	35269	transposase	Streptococcus_phage(57.14%)	8	NA	NA
WP_002354485.1|350_1037_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_012655884.1|1349_2825_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	99.8	3.3e-284
WP_001814874.1|3197_3281_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002292226.1|3405_4143_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_000085863.1|4147_4279_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	93.0	1.7e-14
WP_000576156.1|4497_5052_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001240982.1|5055_7974_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_024127850.1|8280_11244_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	40.0	1.4e-212
