assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003010595.1_ASM301059v1	NZ_CP027602	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 chromosome, complete genome	1	245957-246084	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,WYL,DinG,csa3	Unclear	CGCCTTACCCGGGCTACGCACAGCGCAGAACTGTAGCCCTGCTAAGC	47	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,WYL,DinG,csa3,RT	NA,NA	NA|707aa|up_9|NZ_CP027602.1_234601_236722_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|up_8|NZ_CP027602.1_236883_237573_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	cas3|694aa|up_7|NZ_CP027602.1_237578_239660_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|337aa|up_6|NZ_CP027602.1_239708_240719_+	COG1494, GlpX, Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins [Carbohydrate transport and metabolism]	NA|249aa|up_5|NZ_CP027602.1_240869_241616_+	PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional	NA|143aa|up_4|NZ_CP027602.1_241616_242045_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|200aa|up_3|NZ_CP027602.1_242157_242757_+	pfam07305, DUF1454, Protein of unknown function (DUF1454)	NA|256aa|up_2|NZ_CP027602.1_242866_243634_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|435aa|up_1|NZ_CP027602.1_243726_245031_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|255aa|up_0|NZ_CP027602.1_245095_245860_-	PRK05471, PRK05471, CDP-diacylglycerol pyrophosphatase; Provisional	NA|330aa|down_0|NZ_CP027602.1_246108_247098_-	PRK10752, PRK10752, sulfate ABC transporter substrate-binding protein	NA|82aa|down_1|NZ_CP027602.1_247250_247496_-	PRK15422, PRK15422, septal ring assembly protein ZapB; Provisional	NA|284aa|down_2|NZ_CP027602.1_247938_248790_+	cd00333, MIP, Major intrinsic protein (MIP) superfamily	NA|504aa|down_3|NZ_CP027602.1_248811_250323_+	PRK00047, glpK, glycerol kinase GlpK	NA|401aa|down_4|NZ_CP027602.1_250437_251640_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|464aa|down_5|NZ_CP027602.1_251924_253316_+	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|572aa|down_6|NZ_CP027602.1_253466_255182_+	pfam05170, AsmA, AsmA family	NA|520aa|down_7|NZ_CP027602.1_255433_256993_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|460aa|down_8|NZ_CP027602.1_257005_258385_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|241aa|down_9|NZ_CP027602.1_258572_259295_-	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_003010595.1_ASM301059v1	NZ_CP027602	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 chromosome, complete genome	2	1101864-1102078	2	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,csa3	Orphan	TGCCCTCACCCCGGCCCTCTCCCGGTGGGAGAGGGAGCAAACCCTAAAAAAG	52	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,RT	NA,NA	NA|426aa|up_9|NZ_CP027602.1_1090368_1091646_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|260aa|up_8|NZ_CP027602.1_1092061_1092841_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|441aa|up_7|NZ_CP027602.1_1092950_1094273_+	PRK05820, deoA, thymidine phosphorylase; Reviewed	NA|408aa|up_6|NZ_CP027602.1_1094325_1095549_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|240aa|up_5|NZ_CP027602.1_1095652_1096372_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|339aa|up_4|NZ_CP027602.1_1096461_1097478_-	PRK03822, lplA, lipoate-protein ligase A; Provisional	NA|216aa|up_3|NZ_CP027602.1_1097477_1098125_-	PRK11246, PRK11246, YtjB family periplasmic protein	NA|324aa|up_2|NZ_CP027602.1_1098229_1099201_+	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|461aa|up_1|NZ_CP027602.1_1099210_1100593_+	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|411aa|up_0|NZ_CP027602.1_1100614_1101847_+	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|556aa|down_0|NZ_CP027602.1_1102103_1103771_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|646aa|down_1|NZ_CP027602.1_1103999_1105937_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|110aa|down_2|NZ_CP027602.1_1106025_1106355_+	PRK01381, PRK01381, trp operon repressor	NA|172aa|down_3|NZ_CP027602.1_1106341_1106857_-	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|216aa|down_4|NZ_CP027602.1_1106970_1107618_+	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|290aa|down_5|NZ_CP027602.1_1107614_1108484_-	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|158aa|down_6|NZ_CP027602.1_1108693_1109167_+	PRK10756, PRK10756, protein CreA	NA|230aa|down_7|NZ_CP027602.1_1109179_1109869_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|475aa|down_8|NZ_CP027602.1_1109868_1111293_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|452aa|down_9|NZ_CP027602.1_1111355_1112711_+	PRK11715, PRK11715, cell envelope integrity protein CreD
GCF_003010595.1_ASM301059v1	NZ_CP027602	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 chromosome, complete genome	3	3030262-3030427	3	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,csa3	Orphan	TTCAGTGCCCGGTGGCGGCTGCGCCTTACCGGGCCTACACGCGGCTCCGTAACCC	55	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,RT	NA|315aa|up_8|NZ_CP027602.1_3020291_3021236_-,NA	NA|369aa|up_9|NZ_CP027602.1_3019119_3020226_-	pfam13265, DUF4056, Protein of unknown function (DUF4056)	NA|315aa|up_8|NZ_CP027602.1_3020291_3021236_-	NA	NA|374aa|up_7|NZ_CP027602.1_3021254_3022376_-	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|232aa|up_6|NZ_CP027602.1_3022766_3023462_+	cd19367, TenA_C_ScTHI20-like, TenA_C family similar to the C-terminal TenA_C domain of Saccharomyces cerevisiae THI20 protein	NA|243aa|up_5|NZ_CP027602.1_3023458_3024187_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|247aa|up_4|NZ_CP027602.1_3024183_3024924_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|312aa|up_3|NZ_CP027602.1_3024948_3025884_+	cd13651, PBP2_ThiY, Substrate binding domain of ABC-type transporters for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|462aa|up_2|NZ_CP027602.1_3026190_3027576_+	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate transaminase	NA|491aa|up_1|NZ_CP027602.1_3027594_3029067_+	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|298aa|up_0|NZ_CP027602.1_3029277_3030171_+	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|397aa|down_0|NZ_CP027602.1_3030509_3031700_-	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain	NA|448aa|down_1|NZ_CP027602.1_3031802_3033146_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|247aa|down_2|NZ_CP027602.1_3033142_3033883_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|331aa|down_3|NZ_CP027602.1_3033968_3034961_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|340aa|down_4|NZ_CP027602.1_3035203_3036223_+	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19)	NA|24aa|down_5|NZ_CP027602.1_3036359_3036431_+	PRK00284, pqqA, pyrroloquinoline quinone precursor peptide PqqA	NA|309aa|down_6|NZ_CP027602.1_3036485_3037412_+	PRK05184, PRK05184, pyrroloquinoline quinone biosynthesis protein PqqB; Provisional	NA|252aa|down_7|NZ_CP027602.1_3037405_3038161_+	PRK05157, PRK05157, pyrroloquinoline quinone biosynthesis protein PqqC; Provisional	NA|93aa|down_8|NZ_CP027602.1_3038163_3038442_+	PRK02079, PRK02079, pyrroloquinoline quinone biosynthesis peptide chaperone PqqD	NA|381aa|down_9|NZ_CP027602.1_3038428_3039571_+	PRK05301, PRK05301, pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
GCF_003010595.1_ASM301059v1	NZ_CP027602	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 chromosome, complete genome	4	4115829-4115918	4	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,csa3	Orphan	CACGCAGATTCCATAACCGCACCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,RT	NA|80aa|up_9|NZ_CP027602.1_4107364_4107604_-,NA	NA|80aa|up_9|NZ_CP027602.1_4107364_4107604_-	NA	NA|289aa|up_8|NZ_CP027602.1_4107600_4108467_-	PRK08176, pdxK, pyridoxine/pyridoxal/pyridoxamine kinase	NA|433aa|up_7|NZ_CP027602.1_4108549_4109848_+	PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional	NA|132aa|up_6|NZ_CP027602.1_4110011_4110407_+	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown]	NA|304aa|up_5|NZ_CP027602.1_4110403_4111315_-	PRK11761, cysM, cysteine synthase CysM	NA|365aa|up_4|NZ_CP027602.1_4111433_4112528_-	PRK10851, PRK10851, sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA|292aa|up_3|NZ_CP027602.1_4112517_4113393_-	PRK11602, cysW, sulfate/thiosulfate ABC transporter permease CysW	NA|278aa|up_2|NZ_CP027602.1_4113392_4114226_-	PRK10971, PRK10971, sulfate/thiosulfate ABC transporter permease CysT	NA|339aa|up_1|NZ_CP027602.1_4114225_4115242_-	PRK10852, PRK10852, thiosulfate ABC transporter substrate-binding protein CysP	NA|121aa|up_0|NZ_CP027602.1_4115442_4115805_+	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|300aa|down_0|NZ_CP027602.1_4115966_4116866_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|192aa|down_1|NZ_CP027602.1_4116960_4117536_-	PRK10718, PRK10718, RpoE-regulated lipoprotein; Provisional	NA|150aa|down_2|NZ_CP027602.1_4117597_4118047_-	pfam11143, DUF2919, Protein of unknown function (DUF2919)	NA|142aa|down_3|NZ_CP027602.1_4118033_4118459_-	PRK03624, PRK03624, putative acetyltransferase; Provisional	NA|291aa|down_4|NZ_CP027602.1_4118670_4119543_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|300aa|down_5|NZ_CP027602.1_4119542_4120442_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|760aa|down_6|NZ_CP027602.1_4120495_4122775_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|319aa|down_7|NZ_CP027602.1_4123069_4124026_+	PRK12346, PRK12346, transaldolase A; Provisional	NA|665aa|down_8|NZ_CP027602.1_4124042_4126037_+	PRK12753, PRK12753, transketolase; Reviewed	NA|349aa|down_9|NZ_CP027602.1_4126026_4127073_-	pfam06674, DUF1176, Protein of unknown function (DUF1176)
GCF_003010595.1_ASM301059v1	NZ_CP027602	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 chromosome, complete genome	5	4875411-4875514	5	CRISPRCasFinder	no		cas3,DEDDh,WYL,DinG,csa3	Orphan	CGTCTTCCCCCTCACCCTAACCCTCTCCCGG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,RT	NA|353aa|up_8|NZ_CP027602.1_4863349_4864408_+,NA	NA|478aa|up_9|NZ_CP027602.1_4861902_4863336_+	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|353aa|up_8|NZ_CP027602.1_4863349_4864408_+	NA	NA|784aa|up_7|NZ_CP027602.1_4864425_4866777_+	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|99aa|up_6|NZ_CP027602.1_4866878_4867175_-	PRK10486, PRK10486, (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA|296aa|up_5|NZ_CP027602.1_4867171_4868059_-	PRK08227, PRK08227, 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA|338aa|up_4|NZ_CP027602.1_4868070_4869084_-	PRK15408, PRK15408, autoinducer 2 ABC transporter substrate-binding protein LsrB	NA|335aa|up_3|NZ_CP027602.1_4869080_4870085_-	PRK15038, PRK15038, autoinducer 2 ABC transporter permease LsrD	NA|345aa|up_2|NZ_CP027602.1_4870085_4871120_-	PRK15432, PRK15432, autoinducer 2 ABC transporter permease LsrC; Provisional	NA|496aa|up_1|NZ_CP027602.1_4871116_4872604_-	PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional	NA|324aa|up_0|NZ_CP027602.1_4872822_4873794_+	PRK15418, PRK15418, transcriptional regulator LsrR; Provisional	NA|674aa|down_0|NZ_CP027602.1_4875727_4877749_+	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|377aa|down_1|NZ_CP027602.1_4877856_4878987_-	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|236aa|down_2|NZ_CP027602.1_4879072_4879780_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|201aa|down_3|NZ_CP027602.1_4879823_4880426_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|167aa|down_4|NZ_CP027602.1_4880445_4880946_+	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|330aa|down_5|NZ_CP027602.1_4881019_4882009_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|324aa|down_6|NZ_CP027602.1_4882281_4883253_+	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|416aa|down_7|NZ_CP027602.1_4883520_4884768_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|185aa|down_8|NZ_CP027602.1_4884783_4885338_-	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|496aa|down_9|NZ_CP027602.1_4885467_4886955_-	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus
GCF_003010595.1_ASM301059v1	NZ_CP027603	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence	1	181890-181983	1	CRISPRCasFinder	no		RT	Orphan	GGCTTTGTTGAATAAATAAGATTTCG	26	1	5	181916-181957|181916-181957|181916-181957|181916-181957|181916-181957	NZ_CP027603.1_166158-166199|NZ_CP027603.1_180263-180304|NZ_CP027603.1_187785-187826|NZ_CP027603.1_344356-344315|NZ_CP027603.1_350116-350157	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,RT	NA|87aa|up_0|NZ_CP027603.1_181564_181825_+,NA	NA|327aa|up_9|NZ_CP027603.1_172508_173489_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|322aa|up_8|NZ_CP027603.1_173557_174523_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|273aa|up_7|NZ_CP027603.1_174519_175338_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|221aa|up_6|NZ_CP027603.1_175342_176005_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|224aa|up_5|NZ_CP027603.1_176001_176673_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|283aa|up_4|NZ_CP027603.1_176696_177545_-	cd13625, PBP2_AA_binding_like_1, Substrate-binding domain of putative amino acid-binding protein; the type 2 periplasmic-binding protein fold	NA|318aa|up_3|NZ_CP027603.1_177701_178655_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|404aa|up_2|NZ_CP027603.1_178741_179953_+	cd01090, Creatinase, Creatine amidinohydrolase	NA|308aa|up_1|NZ_CP027603.1_180291_181215_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|87aa|up_0|NZ_CP027603.1_181564_181825_+	NA	NA|323aa|down_0|NZ_CP027603.1_182013_182982_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|317aa|down_1|NZ_CP027603.1_182983_183934_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|157aa|down_2|NZ_CP027603.1_184065_184536_-	pfam08808, RES, RES domain	NA|148aa|down_3|NZ_CP027603.1_184532_184976_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|308aa|down_4|NZ_CP027603.1_187813_188737_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|116aa|down_5|NZ_CP027603.1_190955_191303_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|105aa|down_6|NZ_CP027603.1_191299_191614_-	pfam01527, HTH_Tnp_1, Transposase	NA|321aa|down_7|NZ_CP027603.1_192441_193404_-	cd07339, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase	NA|163aa|down_8|NZ_CP027603.1_193390_193879_-	pfam06146, PsiE, Phosphate-starvation-inducible E	NA|113aa|down_9|NZ_CP027603.1_193890_194229_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
