assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	1	575654-576801	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7,c2c9_V-U4	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Type III-C,Type III-D,Type III-A,Type III-B	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,14,14	15	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA,NA|203aa|down_2|NZ_CP022577.1_579238_579847_-,NA|104aa|down_3|NZ_CP022577.1_580266_580578_-,NA|86aa|down_4|NZ_CP022577.1_580682_580940_-,NA|64aa|down_6|NZ_CP022577.1_582526_582718_-,NA|135aa|down_7|NZ_CP022577.1_582714_583119_-,NA|85aa|down_8|NZ_CP022577.1_583266_583521_+	NA|90aa|up_9|NZ_CP022577.1_565641_565911_+	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_8|NZ_CP022577.1_565907_566453_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NZ_CP022577.1_566757_567645_+	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|295aa|up_6|NZ_CP022577.1_567647_568532_+	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_5|NZ_CP022577.1_568803_569349_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|241aa|up_4|NZ_CP022577.1_569748_570471_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_3|NZ_CP022577.1_570467_572906_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_2|NZ_CP022577.1_572902_573277_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_1|NZ_CP022577.1_573286_573997_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|421aa|up_0|NZ_CP022577.1_574360_575622_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NZ_CP022577.1_576949_577762_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NZ_CP022577.1_577758_579168_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NZ_CP022577.1_579238_579847_-	NA	NA|104aa|down_3|NZ_CP022577.1_580266_580578_-	NA	NA|86aa|down_4|NZ_CP022577.1_580682_580940_-	NA	NA|385aa|down_5|NZ_CP022577.1_581173_582328_-	pfam00665, rve, Integrase core domain	NA|64aa|down_6|NZ_CP022577.1_582526_582718_-	NA	NA|135aa|down_7|NZ_CP022577.1_582714_583119_-	NA	NA|85aa|down_8|NZ_CP022577.1_583266_583521_+	NA	NA|92aa|down_9|NZ_CP022577.1_583696_583972_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	2	1534945-1535086	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|127aa|up_5|NZ_CP022577.1_1527047_1527428_+,NA|136aa|down_2|NZ_CP022577.1_1546013_1546421_+	NA|256aa|up_9|NZ_CP022577.1_1522760_1523528_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NZ_CP022577.1_1523531_1524305_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NZ_CP022577.1_1524541_1525021_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NZ_CP022577.1_1525028_1526891_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NZ_CP022577.1_1527047_1527428_+	NA	NA|447aa|up_4|NZ_CP022577.1_1527464_1528805_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NZ_CP022577.1_1528795_1529911_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NZ_CP022577.1_1530182_1531454_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NZ_CP022577.1_1531491_1532355_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NZ_CP022577.1_1532452_1532917_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|421aa|down_0|NZ_CP022577.1_1538325_1539587_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|767aa|down_1|NZ_CP022577.1_1543578_1545879_-	PLN02892, PLN02892, isocitrate lyase	NA|136aa|down_2|NZ_CP022577.1_1546013_1546421_+	NA	NA|251aa|down_3|NZ_CP022577.1_1546398_1547151_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_4|NZ_CP022577.1_1547250_1548255_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_5|NZ_CP022577.1_1548354_1548960_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_6|NZ_CP022577.1_1549042_1549636_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_7|NZ_CP022577.1_1549749_1550193_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|741aa|down_8|NZ_CP022577.1_1550230_1552453_+	PRK15061, PRK15061, catalase/peroxidase	NA|155aa|down_9|NZ_CP022577.1_1552628_1553093_+	pfam14081, DUF4262, Domain of unknown function (DUF4262)
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	3	1644083-1645078	2	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	GNCGGCGGGGCCGGCGGC	18	2	5	1644224-1644244|1644224-1644244|1644224-1644244|1644224-1644244|1644323-1644343	NZ_CP022577.1_1335622-1335642|NZ_CP022577.1_2200516-2200536|NZ_CP022577.1_2200675-2200695|NZ_CP022577.1_2531585-2531605|NZ_CP022577.1_2602101-2602081	NA	16	16	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA,NA|222aa|down_2|NZ_CP022577.1_1648152_1648818_-	NA|248aa|up_9|NZ_CP022577.1_1632512_1633256_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NZ_CP022577.1_1633252_1633741_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NZ_CP022577.1_1633980_1634385_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NZ_CP022577.1_1634422_1635301_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_5|NZ_CP022577.1_1635317_1635683_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NZ_CP022577.1_1635711_1636635_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NZ_CP022577.1_1636627_1637257_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|809aa|up_2|NZ_CP022577.1_1637453_1639880_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NZ_CP022577.1_1639894_1641538_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NZ_CP022577.1_1641608_1643528_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NZ_CP022577.1_1645287_1646751_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NZ_CP022577.1_1647385_1648090_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NZ_CP022577.1_1648152_1648818_-	NA	NA|301aa|down_3|NZ_CP022577.1_1648922_1649825_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NZ_CP022577.1_1650233_1650665_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NZ_CP022577.1_1650986_1652189_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NZ_CP022577.1_1652198_1652903_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NZ_CP022577.1_1653056_1653413_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NZ_CP022577.1_1653657_1655064_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NZ_CP022577.1_1655195_1656425_-	pfam00823, PPE, PPE family
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	4	2765661-2765822	3	CRT	no	csa3	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Type I-A	GCCGCCGGCCCCGCCAGC	18	0	0	NA	NA	NA	3	3	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|81aa|up_8|NZ_CP022577.1_2755273_2755516_-,NA|184aa|up_2|NZ_CP022577.1_2760979_2761531_+,NA	NA|431aa|up_9|NZ_CP022577.1_2753704_2754997_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|81aa|up_8|NZ_CP022577.1_2755273_2755516_-	NA	NA|287aa|up_7|NZ_CP022577.1_2755791_2756652_+	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|271aa|up_6|NZ_CP022577.1_2756719_2757532_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|257aa|up_5|NZ_CP022577.1_2757618_2758389_-	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|343aa|up_4|NZ_CP022577.1_2759077_2760106_+	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|241aa|up_3|NZ_CP022577.1_2760176_2760899_+	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|184aa|up_2|NZ_CP022577.1_2760979_2761531_+	NA	NA|215aa|up_1|NZ_CP022577.1_2761511_2762156_-	pfam14032, PknH_C, PknH-like extracellular domain	NA|883aa|up_0|NZ_CP022577.1_2762623_2765272_+	pfam00934, PE, PE family	NA|272aa|down_0|NZ_CP022577.1_2769108_2769924_+	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|302aa|down_1|NZ_CP022577.1_2769942_2770848_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|97aa|down_2|NZ_CP022577.1_2770952_2771243_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|141aa|down_3|NZ_CP022577.1_2771204_2771627_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	csa3|131aa|down_4|NZ_CP022577.1_2771684_2772077_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|352aa|down_5|NZ_CP022577.1_2772128_2773184_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|down_6|NZ_CP022577.1_2773264_2773906_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|339aa|down_7|NZ_CP022577.1_2774067_2775084_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|389aa|down_8|NZ_CP022577.1_2775171_2776338_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|685aa|down_9|NZ_CP022577.1_2776503_2778558_+	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	5	2854704-2855675	4	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	NNNCCGCCGGCNCCGCCG	18	1	1	2855460-2855480	NZ_CP022577.1_2139006-2138986	NA	17	17	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|82aa|up_4|NZ_CP022577.1_2850536_2850782_-,NA|46aa|up_3|NZ_CP022577.1_2850940_2851078_+,NA|186aa|down_3|NZ_CP022577.1_2858242_2858800_+,NA|176aa|down_5|NZ_CP022577.1_2860382_2860910_-,NA|71aa|down_8|NZ_CP022577.1_2862774_2862987_-	NA|646aa|up_9|NZ_CP022577.1_2842774_2844712_+	pfam00823, PPE, PPE family	NA|585aa|up_8|NZ_CP022577.1_2844901_2846656_-	pfam00934, PE, PE family	NA|511aa|up_7|NZ_CP022577.1_2846861_2848394_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|391aa|up_6|NZ_CP022577.1_2848400_2849573_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|295aa|up_5|NZ_CP022577.1_2849583_2850468_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|82aa|up_4|NZ_CP022577.1_2850536_2850782_-	NA	NA|46aa|up_3|NZ_CP022577.1_2850940_2851078_+	NA	NA|143aa|up_2|NZ_CP022577.1_2851158_2851587_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_1|NZ_CP022577.1_2851610_2851868_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|758aa|up_0|NZ_CP022577.1_2851958_2854232_-	pfam00934, PE, PE family	NA|176aa|down_0|NZ_CP022577.1_2857004_2857532_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|49aa|down_1|NZ_CP022577.1_2857480_2857627_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|169aa|down_2|NZ_CP022577.1_2857739_2858246_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|186aa|down_3|NZ_CP022577.1_2858242_2858800_+	NA	NA|176aa|down_4|NZ_CP022577.1_2859177_2859705_-	pfam00934, PE, PE family	NA|176aa|down_5|NZ_CP022577.1_2860382_2860910_-	NA	NA|283aa|down_6|NZ_CP022577.1_2861024_2861873_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|183aa|down_7|NZ_CP022577.1_2862077_2862626_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|71aa|down_8|NZ_CP022577.1_2862774_2862987_-	NA	NA|166aa|down_9|NZ_CP022577.1_2862983_2863481_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	6	3001198-3001274	3	CRISPRCasFinder	no	c2c9_V-U4	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Type V-U4	ACCCGCGCTCACGCCGCACCTCA	23	0	0	NA	NA	NA	1	1	TypeV-U4	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA,NA	NA|104aa|up_9|NZ_CP022577.1_2993131_2993443_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|254aa|up_8|NZ_CP022577.1_2993499_2994261_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|up_7|NZ_CP022577.1_2994304_2994775_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|169aa|up_6|NZ_CP022577.1_2994888_2995395_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|79aa|up_5|NZ_CP022577.1_2995498_2995735_+	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|138aa|up_4|NZ_CP022577.1_2995731_2996145_+	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|412aa|up_3|NZ_CP022577.1_2996395_2997631_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|86aa|up_2|NZ_CP022577.1_2997813_2998071_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_1|NZ_CP022577.1_2998067_2998460_+	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|517aa|up_0|NZ_CP022577.1_2998511_3000062_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|down_0|NZ_CP022577.1_3002794_3004240_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|405aa|down_1|NZ_CP022577.1_3005265_3006480_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|296aa|down_2|NZ_CP022577.1_3006485_3007373_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|266aa|down_3|NZ_CP022577.1_3007374_3008172_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|241aa|down_4|NZ_CP022577.1_3008168_3008891_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|796aa|down_5|NZ_CP022577.1_3009028_3011416_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|878aa|down_6|NZ_CP022577.1_3011438_3014072_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|229aa|down_7|NZ_CP022577.1_3014225_3014912_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|136aa|down_8|NZ_CP022577.1_3014971_3015379_-	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|72aa|down_9|NZ_CP022577.1_3015375_3015591_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	7	3330411-3330507	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|161aa|up_8|NZ_CP022577.1_3316108_3316591_+,NA|101aa|up_1|NZ_CP022577.1_3329369_3329672_-,NA	NA|239aa|up_9|NZ_CP022577.1_3315334_3316051_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP022577.1_3316108_3316591_+	NA	NA|224aa|up_7|NZ_CP022577.1_3316578_3317250_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP022577.1_3317452_3326998_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP022577.1_3327005_3327914_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP022577.1_3327910_3328543_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP022577.1_3328678_3329104_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP022577.1_3329100_3329322_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP022577.1_3329369_3329672_-	NA	NA|76aa|up_0|NZ_CP022577.1_3329668_3329896_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP022577.1_3331992_3333390_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP022577.1_3333399_3334203_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP022577.1_3334191_3334977_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP022577.1_3335083_3336286_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP022577.1_3336272_3337268_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP022577.1_3337264_3338650_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP022577.1_3338646_3340065_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP022577.1_3340111_3340999_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP022577.1_3341009_3341300_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP022577.1_3341329_3341623_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	8	3330588-3330858	5	CRISPRCasFinder	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	4	4	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|161aa|up_8|NZ_CP022577.1_3316108_3316591_+,NA|101aa|up_1|NZ_CP022577.1_3329369_3329672_-,NA	NA|239aa|up_9|NZ_CP022577.1_3315334_3316051_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP022577.1_3316108_3316591_+	NA	NA|224aa|up_7|NZ_CP022577.1_3316578_3317250_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP022577.1_3317452_3326998_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP022577.1_3327005_3327914_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP022577.1_3327910_3328543_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP022577.1_3328678_3329104_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP022577.1_3329100_3329322_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP022577.1_3329369_3329672_-	NA	NA|76aa|up_0|NZ_CP022577.1_3329668_3329896_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP022577.1_3331992_3333390_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP022577.1_3333399_3334203_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP022577.1_3334191_3334977_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP022577.1_3335083_3336286_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP022577.1_3336272_3337268_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP022577.1_3337264_3338650_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP022577.1_3338646_3340065_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP022577.1_3340111_3340999_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP022577.1_3341009_3341300_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP022577.1_3341329_3341623_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	9	3331128-3331469	6	CRISPRCasFinder	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	1	1	3331152-3331172	NZ_CP022577.1_3561036-3561056	NA	5	5	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|161aa|up_8|NZ_CP022577.1_3316108_3316591_+,NA|101aa|up_1|NZ_CP022577.1_3329369_3329672_-,NA	NA|239aa|up_9|NZ_CP022577.1_3315334_3316051_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP022577.1_3316108_3316591_+	NA	NA|224aa|up_7|NZ_CP022577.1_3316578_3317250_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP022577.1_3317452_3326998_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP022577.1_3327005_3327914_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP022577.1_3327910_3328543_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP022577.1_3328678_3329104_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP022577.1_3329100_3329322_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP022577.1_3329369_3329672_-	NA	NA|76aa|up_0|NZ_CP022577.1_3329668_3329896_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP022577.1_3331992_3333390_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP022577.1_3333399_3334203_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP022577.1_3334191_3334977_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP022577.1_3335083_3336286_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP022577.1_3336272_3337268_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP022577.1_3337264_3338650_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP022577.1_3338646_3340065_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP022577.1_3340111_3340999_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP022577.1_3341009_3341300_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP022577.1_3341329_3341623_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	10	3358672-3359749	5	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CGGNGCCGGCGGNNNCGGCGG	21	1	4	3359666-3359689|3359666-3359689|3359666-3359689|3359666-3359689	NZ_CP022577.1_3356660-3356683|NZ_CP022577.1_1269505-1269528|NZ_CP022577.1_2852109-2852086|NZ_CP022577.1_1832786-1832809	NA	20	20	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA,NA|61aa|down_0|NZ_CP022577.1_3359948_3360131_+	NA|97aa|up_9|NZ_CP022577.1_3341009_3341300_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_8|NZ_CP022577.1_3341329_3341623_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|514aa|up_7|NZ_CP022577.1_3341671_3343213_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|103aa|up_6|NZ_CP022577.1_3343215_3343524_-	pfam00934, PE, PE family	NA|1331aa|up_5|NZ_CP022577.1_3343520_3347513_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|539aa|up_4|NZ_CP022577.1_3347509_3349126_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|632aa|up_3|NZ_CP022577.1_3349122_3351018_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|303aa|up_2|NZ_CP022577.1_3351241_3352150_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|537aa|up_1|NZ_CP022577.1_3352173_3353784_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|903aa|up_0|NZ_CP022577.1_3354074_3356783_+	pfam00934, PE, PE family	NA|61aa|down_0|NZ_CP022577.1_3359948_3360131_+	NA	NA|143aa|down_1|NZ_CP022577.1_3360154_3360583_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|307aa|down_2|NZ_CP022577.1_3360622_3361543_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|242aa|down_3|NZ_CP022577.1_3361632_3362358_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|down_4|NZ_CP022577.1_3362287_3362869_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|207aa|down_5|NZ_CP022577.1_3362965_3363586_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|378aa|down_6|NZ_CP022577.1_3363582_3364716_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|732aa|down_7|NZ_CP022577.1_3364829_3367025_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|561aa|down_8|NZ_CP022577.1_3367041_3368724_-	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|398aa|down_9|NZ_CP022577.1_3368759_3369953_+	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	11	3992607-3992695	7	CRISPRCasFinder	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	GGCCGTCATCCGGCCCGCATCGTCGCCGAGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|126aa|up_6|NZ_CP022577.1_3986993_3987371_-,NA|233aa|down_0|NZ_CP022577.1_3992891_3993590_+,NA|257aa|down_6|NZ_CP022577.1_4001337_4002108_+	NA|152aa|up_9|NZ_CP022577.1_3984858_3985314_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|265aa|up_8|NZ_CP022577.1_3985320_3986115_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|225aa|up_7|NZ_CP022577.1_3986220_3986895_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|126aa|up_6|NZ_CP022577.1_3986993_3987371_-	NA	NA|246aa|up_5|NZ_CP022577.1_3987478_3988216_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|228aa|up_4|NZ_CP022577.1_3988215_3988899_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|274aa|up_3|NZ_CP022577.1_3989030_3989852_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|398aa|up_2|NZ_CP022577.1_3989857_3991051_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|328aa|up_1|NZ_CP022577.1_3991043_3992027_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|173aa|up_0|NZ_CP022577.1_3992027_3992546_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|233aa|down_0|NZ_CP022577.1_3992891_3993590_+	NA	NA|652aa|down_1|NZ_CP022577.1_3993625_3995581_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|542aa|down_2|NZ_CP022577.1_3996288_3997914_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_3|NZ_CP022577.1_3997915_3998842_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|288aa|down_4|NZ_CP022577.1_3998834_3999698_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|549aa|down_5|NZ_CP022577.1_3999694_4001341_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|257aa|down_6|NZ_CP022577.1_4001337_4002108_+	NA	NA|288aa|down_7|NZ_CP022577.1_4002862_4003726_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|351aa|down_8|NZ_CP022577.1_4004224_4005277_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|388aa|down_9|NZ_CP022577.1_4005273_4006437_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	12	4153588-4154752	6	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	GCCGCCGNNNCCGCCGGNGCCGCCNNNGCCGCCGGNNCCGCCG	43	10	10	4153901-4153920|4153964-4154004|4154048-4154076|4154189-4154223|4154267-4154313|4154357-4154382|4154426-4154463|4154507-4154535|4154579-4154610|4154654-4154709	NZ_CP022577.1_4155116-4155135|NZ_CP022577.1_4155179-4155219|NZ_CP022577.1_4155263-4155291|NZ_CP022577.1_4154798-4154832|NZ_CP022577.1_4154876-4154922|NZ_CP022577.1_4154966-4154991|NZ_CP022577.1_4155035-4155072|NZ_CP022577.1_4155116-4155144|NZ_CP022577.1_4155188-4155219|NZ_CP022577.1_4155263-4155318	NA	14	14	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|280aa|up_2|NZ_CP022577.1_4149451_4150291_-,NA	NA|344aa|up_9|NZ_CP022577.1_4141935_4142967_-	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|395aa|up_8|NZ_CP022577.1_4143008_4144193_-	PRK08313, PRK08313, thiolase domain-containing protein	NA|355aa|up_7|NZ_CP022577.1_4144209_4145274_-	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|304aa|up_6|NZ_CP022577.1_4145289_4146201_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|348aa|up_5|NZ_CP022577.1_4146353_4147397_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_4|NZ_CP022577.1_4147461_4148172_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_3|NZ_CP022577.1_4148200_4149397_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_2|NZ_CP022577.1_4149451_4150291_-	NA	NA|264aa|up_1|NZ_CP022577.1_4150386_4151178_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_0|NZ_CP022577.1_4151251_4152898_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|down_0|NZ_CP022577.1_4158170_4158827_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|279aa|down_1|NZ_CP022577.1_4165737_4166574_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|516aa|down_2|NZ_CP022577.1_4166570_4168118_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1621aa|down_3|NZ_CP022577.1_4168284_4173147_-	pfam00934, PE, PE family	NA|1384aa|down_4|NZ_CP022577.1_4173437_4177589_-	pfam00934, PE, PE family	NA|503aa|down_5|NZ_CP022577.1_4177759_4179268_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_6|NZ_CP022577.1_4179338_4180460_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_7|NZ_CP022577.1_4180484_4181687_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_8|NZ_CP022577.1_4181901_4182093_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_9|NZ_CP022577.1_4182117_4183071_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	13	4173467-4173899	7	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CGCCNGTGCCGCCGNTGCCGCC	22	0	0	NA	NA	NA	7	7	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|280aa|up_6|NZ_CP022577.1_4149451_4150291_-,NA	NA|348aa|up_9|NZ_CP022577.1_4146353_4147397_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_8|NZ_CP022577.1_4147461_4148172_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_7|NZ_CP022577.1_4148200_4149397_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_6|NZ_CP022577.1_4149451_4150291_-	NA	NA|264aa|up_5|NZ_CP022577.1_4150386_4151178_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_4|NZ_CP022577.1_4151251_4152898_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|up_3|NZ_CP022577.1_4158170_4158827_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|279aa|up_2|NZ_CP022577.1_4165737_4166574_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|516aa|up_1|NZ_CP022577.1_4166570_4168118_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1621aa|up_0|NZ_CP022577.1_4168284_4173147_-	pfam00934, PE, PE family	NA|503aa|down_0|NZ_CP022577.1_4177759_4179268_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_1|NZ_CP022577.1_4179338_4180460_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_2|NZ_CP022577.1_4180484_4181687_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_CP022577.1_4181901_4182093_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_4|NZ_CP022577.1_4182117_4183071_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_CP022577.1_4183296_4184061_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_CP022577.1_4184095_4184938_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_CP022577.1_4184957_4186160_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_CP022577.1_4186159_4187212_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|358aa|down_9|NZ_CP022577.1_4187201_4188275_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	14	4174655-4175334	8	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CGTTGCCGCCGTNGCCGCCGTTGCCNCCGTNNCCG	35	0	0	NA	NA	NA	7	7	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|280aa|up_6|NZ_CP022577.1_4149451_4150291_-,NA	NA|348aa|up_9|NZ_CP022577.1_4146353_4147397_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_8|NZ_CP022577.1_4147461_4148172_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_7|NZ_CP022577.1_4148200_4149397_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_6|NZ_CP022577.1_4149451_4150291_-	NA	NA|264aa|up_5|NZ_CP022577.1_4150386_4151178_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_4|NZ_CP022577.1_4151251_4152898_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|up_3|NZ_CP022577.1_4158170_4158827_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|279aa|up_2|NZ_CP022577.1_4165737_4166574_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|516aa|up_1|NZ_CP022577.1_4166570_4168118_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1621aa|up_0|NZ_CP022577.1_4168284_4173147_-	pfam00934, PE, PE family	NA|503aa|down_0|NZ_CP022577.1_4177759_4179268_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_1|NZ_CP022577.1_4179338_4180460_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_2|NZ_CP022577.1_4180484_4181687_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_CP022577.1_4181901_4182093_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_4|NZ_CP022577.1_4182117_4183071_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_CP022577.1_4183296_4184061_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_CP022577.1_4184095_4184938_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_CP022577.1_4184957_4186160_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_CP022577.1_4186159_4187212_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|358aa|down_9|NZ_CP022577.1_4187201_4188275_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	15	4303639-4304907	9	CRT	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	CCGCCGNCNCCGCCGNTGCCG	21	0	0	NA	NA	NA	20	20	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|237aa|up_7|NZ_CP022577.1_4294579_4295290_-,NA|205aa|up_6|NZ_CP022577.1_4295288_4295903_+,NA|297aa|down_5|NZ_CP022577.1_4313660_4314551_+	NA|303aa|up_9|NZ_CP022577.1_4291926_4292835_+	TIGR03465, HpnD, squalene synthase HpnD	NA|526aa|up_8|NZ_CP022577.1_4292846_4294424_+	PRK00074, guaA, GMP synthase; Reviewed	NA|237aa|up_7|NZ_CP022577.1_4294579_4295290_-	NA	NA|205aa|up_6|NZ_CP022577.1_4295288_4295903_+	NA	NA|528aa|up_5|NZ_CP022577.1_4295899_4297483_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|309aa|up_4|NZ_CP022577.1_4297537_4298464_-	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases	NA|288aa|up_3|NZ_CP022577.1_4298487_4299351_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|651aa|up_2|NZ_CP022577.1_4299351_4301304_-	PRK07201, PRK07201, SDR family oxidoreductase	NA|237aa|up_1|NZ_CP022577.1_4301349_4302060_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|291aa|up_0|NZ_CP022577.1_4302133_4303006_+	PLN02864, PLN02864, enoyl-CoA hydratase	NA|103aa|down_0|NZ_CP022577.1_4306963_4307272_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|down_1|NZ_CP022577.1_4307271_4307664_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|421aa|down_2|NZ_CP022577.1_4309124_4310386_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|330aa|down_3|NZ_CP022577.1_4310827_4311817_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|613aa|down_4|NZ_CP022577.1_4311813_4313652_+	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|297aa|down_5|NZ_CP022577.1_4313660_4314551_+	NA	NA|502aa|down_6|NZ_CP022577.1_4314555_4316061_+	PLN02592, PLN02592, ent-copalyl diphosphate synthase	NA|218aa|down_7|NZ_CP022577.1_4316099_4316753_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|476aa|down_8|NZ_CP022577.1_4316860_4318288_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|83aa|down_9|NZ_CP022577.1_4318292_4318541_-	PRK06144, PRK06144, enoyl-CoA hydratase; Provisional
GCF_003006135.1_ASM300613v1	NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	16	4344310-4344435	2	PILER-CR	no		cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	Orphan	TTTCAACACCGGCATCGGCAAC	22	0	0	NA	NA	NA	2	2	Orphan	cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG	NA|87aa|up_3|NZ_CP022577.1_4337921_4338182_+,NA|96aa|down_0|NZ_CP022577.1_4351301_4351589_+	NA|397aa|up_9|NZ_CP022577.1_4334383_4335574_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|86aa|up_8|NZ_CP022577.1_4335615_4335873_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|92aa|up_7|NZ_CP022577.1_4335869_4336145_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|282aa|up_6|NZ_CP022577.1_4336268_4337114_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|98aa|up_5|NZ_CP022577.1_4337110_4337404_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|130aa|up_4|NZ_CP022577.1_4337417_4337807_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|87aa|up_3|NZ_CP022577.1_4337921_4338182_+	NA	NA|73aa|up_2|NZ_CP022577.1_4338208_4338427_+	pfam01565, FAD_binding_4, FAD binding domain	NA|124aa|up_1|NZ_CP022577.1_4338324_4338696_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|265aa|up_0|NZ_CP022577.1_4338777_4339572_+	pfam08031, BBE, Berberine and berberine like	NA|96aa|down_0|NZ_CP022577.1_4351301_4351589_+	NA	NA|247aa|down_1|NZ_CP022577.1_4351883_4352624_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|149aa|down_2|NZ_CP022577.1_4352660_4353107_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|3158aa|down_3|NZ_CP022577.1_4353732_4363206_+	pfam00823, PPE, PPE family	NA|86aa|down_4|NZ_CP022577.1_4363461_4363719_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|327aa|down_5|NZ_CP022577.1_4369107_4370088_+	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|244aa|down_6|NZ_CP022577.1_4376135_4376867_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|380aa|down_7|NZ_CP022577.1_4376863_4378003_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|450aa|down_8|NZ_CP022577.1_4378014_4379364_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|410aa|down_9|NZ_CP022577.1_4379646_4380876_+	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase
