The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	4413712	574360	614722	4413712	tRNA,transposase,integrase	Burkholderia_virus(40.0%)	41	574319:574378	614706:616060
574319:574378	attL	TGAACCGCCCCGGTGAGTCCGGAGACTCTCTGATCTGAGACCTCAGCCGGCGGCTGGTCT	NA	NA	NA	NA
WP_087902221.1|574360_575622_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899491.1|576949_577762_-	ExeA family protein	NA	NA	NA	NA	NA
WP_003414198.1|577758_579168_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003414195.1|579238_579847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414190.1|580266_580578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899489.1|580682_580940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899488.1|581173_582328_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003414184.1|582526_582718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414181.1|582714_583119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003917684.1|583266_583521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003911993.1|583696_583972_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_003414172.1|584162_585206_+	DUF2293 domain-containing protein	NA	NA	NA	NA	NA
WP_003901465.1|585248_585479_+	antitoxin MazE	NA	NA	NA	NA	NA
WP_003414166.1|585462_585819_+	type II toxin-antitoxin system toxin endoribonuclease MazF9	NA	NA	NA	NA	NA
WP_003899485.1|585920_587570_-	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_003414158.1|587588_588218_-	DUF3558 family protein	NA	NA	NA	NA	NA
WP_003414157.1|588348_588675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414155.1|588678_590367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900574.1|590366_590930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414151.1|591074_592049_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003414149.1|592045_592729_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
WP_003414147.1|592725_593622_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003414146.1|593823_594405_+|transposase	IS607-like element IS1602 family transposase	transposase	F9VHY9	Thermus_phage	30.6	5.0e-18
WP_003899482.1|594404_595784_+|transposase	transposase	transposase	A0A7P9	Microcystis_virus	30.3	9.3e-31
WP_003414142.1|595816_597022_+	lipid-transfer protein	NA	NA	NA	NA	NA
WP_003414139.1|597047_598280_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_003414136.1|598340_599027_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA	NA
WP_003414134.1|599111_600875_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_003414131.1|601085_602081_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003414128.1|602237_602507_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003899480.1|602519_603035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414124.1|603388_605647_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003414119.1|605624_606941_+	insulinase family protein	NA	J3IZ03	Acanthamoeba_polyphaga_lentillevirus	24.4	5.4e-28
WP_003899478.1|607001_608036_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_106420768.1|608050_609166_-	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_003899476.1|609231_609771_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003899475.1|609802_610273_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003414107.1|610430_611501_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003414104.1|611682_612612_+	oxidoreductase	NA	NA	NA	NA	NA
WP_003414102.1|612615_613077_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_087902221.1|613461_614722_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
614706:616060	attR	AGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACGGTGCCCGCGTTGCTGCGGGTCCGTTTCCCGTGGCCGCCCTTCGAACCGGACGTGCGACTTTCACCGTATCTGGCTCTTCACGGAATCTGCCGATGGGGTGGTTCAGACAGCTGCGACAGAACTACCGTGCAGGTCTTTCACCTCCACTCGATCAACAAGCGCCTCACGGCGCACGCCGGGTTTGGTGCAGCCGCGGTCGTTGGCCTCGAGGACGGCCCGGTCTAGGGTGAAGGCCATGCGGGTAGGCGTCCTTGGAGCCAAAGGCAAGGTCGGAGCGACGATGGTGCGGGCGGTGGCGGCCGCCGACGACCTGACCCTATCCGCCGAGCTGGATGCCGGCGATCCGCTGAGCCTGCTAACGGACGGTAACACCGAGGTCGTCATCGACTTCACCCACCCGGACGTGGTGATGGGCAATCTGGAGTTCCTCATCGACAACGGAATTCACGCCGTGGTCGGTACCACGGGGTTCACCGCCGAGCGGTTTCAACAAGTCGAATCGTGGCTCGTCGCAAAACCCAACACATCGGTGTTGATAGCGCCAAACTTCGCGATCGGAGCGGTGCTGTCCATGCATTTCGCCAAGCAGGCCGCACGGTTTTTCGACTCGGCCGAGGTCATTGAGCTGCATCATCCGCACAAGGCTGACGCGCCGTCAGGCACGGCCGCGCGTACCGCGAAGCTGATCGCCGAGGCCCGAAAAGGCTTGCCGCCCAATCCCGATGCCACCAGTACCAGCCTGCCGGGCGCGCGTGGTGCCGACGTCGACGGCATACCGGTGCACGCGGTGCGGCTGGCCGGACTGGTCGCCCACCAGGAGGTGCTGTTCGGGACCGAGGGGGAGACTCTGACCATCCGCCACGATAGCCTCGATCGCACATCGTTTGTGCCCGGTGTGCTGTTGGCGGTGCGCCGCATCGCCGAACGCCCTGGTCTCACCGTAGGTCTTGAGCCCCTACTCGATCTGCACTGACCGACACTGTGATGACCAGGCGCACCCTGTATGTCCAGTTGATAATCGCGTTCATGTGCGTGGCGATGGTGGCGTACCTGGTTATGCTCGGGCGTGTCGCCGTCGCAATGATCGGTTCGGGCCGCGCCGCGGCTGCCGGGCTGGGGCTGGCGCTGCTGATCCTGCCGGTCATTGGGCTGTGGGCCATGATTGCCACGCTGCGGGCCGGATTCGCGTATCAGCGGCTGGCCCGTCTGATCGCCGAAGACGGACTGGACATCGACGCCAGCGCGCTGCCCCGCCGGGCTTCTGGCCGCATTCAGCGAGACGCGGCCGATGCG	NA	NA	NA	NA
>prophage 2
NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	4413712	712930	725676	4413712	terminase,capsid,head,protease,integrase	Mycobacterium_phage(57.14%)	20	716587:716614	726211:726238
WP_003413845.1|712930_713689_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A249XSS8	Mycobacterium_phage	40.8	4.7e-16
WP_003899423.1|714604_714886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413719.1|715233_715488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413717.1|715498_715732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003900544.1|715830_716103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899422.1|716008_716398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899421.1|716394_716622_+	hypothetical protein	NA	NA	NA	NA	NA
716587:716614	attL	TGGTGCGCGATACTGGGATTGAACCAGT	NA	NA	NA	NA
WP_003899420.1|716766_717894_+|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
WP_003900543.1|717896_718259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899418.1|718275_718536_+	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003899417.1|718532_718925_+	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899416.1|718926_720354_+	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899415.1|720350_720596_+	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899414.1|720675_720999_+	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899413.1|721030_721657_+|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899412.1|721809_722343_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003901443.1|722350_723790_+|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003908028.1|723960_724212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003900539.1|724199_724664_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003900538.1|724677_725676_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
726211:726238	attR	TGGTGCGCGATACTGGGATTGAACCAGT	NA	NA	NA	NA
>prophage 4
NZ_CP022577	Mycobacterium tuberculosis strain WC078 chromosome, complete genome	4413712	4309124	4393742	4413712	tRNA,transposase,protease	Pandoravirus(33.33%)	55	NA	NA
WP_087902221.1|4309124_4310386_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003417912.1|4310827_4311817_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_003918607.1|4311813_4313652_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003417908.1|4313660_4314551_+	diterpene synthase	NA	NA	NA	NA	NA
WP_003417905.1|4314555_4316061_+	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417903.1|4316099_4316753_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417900.1|4316860_4318288_-	amidase	NA	NA	NA	NA	NA
WP_003417897.1|4318292_4318541_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003900037.1|4318541_4319183_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417895.1|4319261_4319366_-	PE family protein	NA	NA	NA	NA	NA
WP_003417892.1|4319419_4320595_-	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003900036.1|4320636_4321977_-	diacyglycerol O-acyltransferase	NA	NA	NA	NA	NA
WP_003908228.1|4322168_4325408_+	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003417882.1|4325496_4325931_-	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003417881.1|4325929_4326574_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_009938654.1|4326574_4328350_-	PE family protein	NA	NA	NA	NA	NA
WP_003901617.1|4328716_4329181_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003901616.1|4329416_4332047_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417776.1|4332043_4332436_+	roadblock/LC7 domain-containing protein	NA	NA	NA	NA	NA
WP_003417772.1|4332413_4332782_+	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417769.1|4332762_4333344_+	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417767.1|4333350_4333902_+	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417765.1|4333898_4334267_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003900033.1|4334383_4335574_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417760.1|4335615_4335873_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003417757.1|4335869_4336145_-	type II toxin-antitoxin system antitoxin RelJ	NA	NA	NA	NA	NA
WP_003417751.1|4336268_4337114_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417749.1|4337110_4337404_+	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417745.1|4337417_4337807_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417741.1|4337921_4338182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157132559.1|4338208_4338427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|4338324_4338696_+	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_003417738.1|4338777_4339572_+	BBE domain-containing protein	NA	NA	NA	NA	NA
WP_009938650.1|4351301_4351589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003911006.1|4351883_4352624_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_049961743.1|4352660_4353107_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003901612.1|4353732_4363206_+	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|4363461_4363719_+	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_031654342.1|4369107_4370088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417461.1|4376135_4376867_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003417458.1|4376863_4378003_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003900028.1|4378014_4379364_-	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417452.1|4379646_4380876_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003905041.1|4380942_4381587_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417440.1|4381859_4382870_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003417435.1|4382890_4383760_+	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003900026.1|4383793_4384234_-	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417421.1|4384708_4385554_+|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003417418.1|4385744_4386896_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417416.1|4386892_4388401_-	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417415.1|4388496_4389714_-	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003902446.1|4389782_4391150_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417413.1|4391158_4392097_+	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003902445.1|4392029_4393559_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009937401.1|4393580_4393742_-|transposase	transposase	transposase	NA	NA	NA	NA
