assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	1	431179-432326	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7,c2c9_V-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type III-B,Type III-C,Type III-D,Type III-A	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,14,14	15	TypeIII-B,TypeIII-C,TypeIII-D,TypeIII-A	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_2|NZ_CP022578.1_434763_435372_-,NA|104aa|down_3|NZ_CP022578.1_435791_436103_-,NA|86aa|down_4|NZ_CP022578.1_436207_436465_-,NA|64aa|down_6|NZ_CP022578.1_438051_438243_-,NA|135aa|down_7|NZ_CP022578.1_438239_438644_-,NA|85aa|down_8|NZ_CP022578.1_438791_439046_+	NA|90aa|up_9|NZ_CP022578.1_421166_421436_+	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_8|NZ_CP022578.1_421432_421978_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NZ_CP022578.1_422282_423170_+	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|295aa|up_6|NZ_CP022578.1_423172_424057_+	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_5|NZ_CP022578.1_424328_424874_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|241aa|up_4|NZ_CP022578.1_425273_425996_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_3|NZ_CP022578.1_425992_428431_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_2|NZ_CP022578.1_428427_428802_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_1|NZ_CP022578.1_428811_429522_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|421aa|up_0|NZ_CP022578.1_429885_431147_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NZ_CP022578.1_432474_433287_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NZ_CP022578.1_433283_434693_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NZ_CP022578.1_434763_435372_-	NA	NA|104aa|down_3|NZ_CP022578.1_435791_436103_-	NA	NA|86aa|down_4|NZ_CP022578.1_436207_436465_-	NA	NA|385aa|down_5|NZ_CP022578.1_436698_437853_-	pfam00665, rve, Integrase core domain	NA|64aa|down_6|NZ_CP022578.1_438051_438243_-	NA	NA|135aa|down_7|NZ_CP022578.1_438239_438644_-	NA	NA|85aa|down_8|NZ_CP022578.1_438791_439046_+	NA	NA|92aa|down_9|NZ_CP022578.1_439221_439497_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	2	1390476-1390617	2	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|127aa|up_5|NZ_CP022578.1_1382578_1382959_+,NA|136aa|down_2|NZ_CP022578.1_1401544_1401952_+	NA|256aa|up_9|NZ_CP022578.1_1378291_1379059_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NZ_CP022578.1_1379062_1379836_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NZ_CP022578.1_1380072_1380552_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NZ_CP022578.1_1380559_1382422_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NZ_CP022578.1_1382578_1382959_+	NA	NA|447aa|up_4|NZ_CP022578.1_1382995_1384336_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NZ_CP022578.1_1384326_1385442_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NZ_CP022578.1_1385713_1386985_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NZ_CP022578.1_1387022_1387886_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NZ_CP022578.1_1387983_1388448_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|421aa|down_0|NZ_CP022578.1_1393856_1395118_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|767aa|down_1|NZ_CP022578.1_1399109_1401410_-	PLN02892, PLN02892, isocitrate lyase	NA|136aa|down_2|NZ_CP022578.1_1401544_1401952_+	NA	NA|251aa|down_3|NZ_CP022578.1_1401929_1402682_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_4|NZ_CP022578.1_1402781_1403786_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_5|NZ_CP022578.1_1403885_1404491_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_6|NZ_CP022578.1_1404573_1405167_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_7|NZ_CP022578.1_1405280_1405724_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|741aa|down_8|NZ_CP022578.1_1405761_1407984_+	PRK15061, PRK15061, catalase/peroxidase	NA|155aa|down_9|NZ_CP022578.1_1408159_1408624_+	pfam14081, DUF4262, Domain of unknown function (DUF4262)
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	3	1499614-1500609	2	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGGGCCGGCGGC	18	2	5	1499755-1499775|1499755-1499775|1499755-1499775|1499755-1499775|1499854-1499874	NZ_CP022578.1_1191147-1191167|NZ_CP022578.1_2056047-2056067|NZ_CP022578.1_2056206-2056226|NZ_CP022578.1_2387116-2387136|NZ_CP022578.1_2457632-2457612	NA	16	16	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|222aa|down_2|NZ_CP022578.1_1503683_1504349_-	NA|248aa|up_9|NZ_CP022578.1_1488043_1488787_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NZ_CP022578.1_1488783_1489272_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NZ_CP022578.1_1489511_1489916_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NZ_CP022578.1_1489953_1490832_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_5|NZ_CP022578.1_1490848_1491214_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NZ_CP022578.1_1491242_1492166_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NZ_CP022578.1_1492158_1492788_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|809aa|up_2|NZ_CP022578.1_1492984_1495411_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NZ_CP022578.1_1495425_1497069_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NZ_CP022578.1_1497139_1499059_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NZ_CP022578.1_1500818_1502282_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NZ_CP022578.1_1502916_1503621_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NZ_CP022578.1_1503683_1504349_-	NA	NA|301aa|down_3|NZ_CP022578.1_1504453_1505356_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NZ_CP022578.1_1505764_1506196_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NZ_CP022578.1_1506517_1507720_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NZ_CP022578.1_1507729_1508434_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NZ_CP022578.1_1508587_1508944_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NZ_CP022578.1_1509188_1510595_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NZ_CP022578.1_1510726_1511956_-	pfam00823, PPE, PPE family
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	4	2711007-2711164	3	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGGCCCCGCCGGCCCCGCC	23	0	0	NA	NA	NA	3	3	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|82aa|up_4|NZ_CP022578.1_2706068_2706314_-,NA|46aa|up_3|NZ_CP022578.1_2706472_2706610_+,NA|186aa|down_3|NZ_CP022578.1_2713774_2714332_+,NA|176aa|down_5|NZ_CP022578.1_2715914_2716442_-,NA|71aa|down_8|NZ_CP022578.1_2718306_2718519_-	NA|646aa|up_9|NZ_CP022578.1_2698306_2700244_+	pfam00823, PPE, PPE family	NA|585aa|up_8|NZ_CP022578.1_2700433_2702188_-	pfam00934, PE, PE family	NA|511aa|up_7|NZ_CP022578.1_2702393_2703926_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|391aa|up_6|NZ_CP022578.1_2703932_2705105_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|295aa|up_5|NZ_CP022578.1_2705115_2706000_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|82aa|up_4|NZ_CP022578.1_2706068_2706314_-	NA	NA|46aa|up_3|NZ_CP022578.1_2706472_2706610_+	NA	NA|143aa|up_2|NZ_CP022578.1_2706690_2707119_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_1|NZ_CP022578.1_2707142_2707400_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|758aa|up_0|NZ_CP022578.1_2707490_2709764_-	pfam00934, PE, PE family	NA|176aa|down_0|NZ_CP022578.1_2712536_2713064_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|49aa|down_1|NZ_CP022578.1_2713012_2713159_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|169aa|down_2|NZ_CP022578.1_2713271_2713778_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|186aa|down_3|NZ_CP022578.1_2713774_2714332_+	NA	NA|176aa|down_4|NZ_CP022578.1_2714709_2715237_-	pfam00934, PE, PE family	NA|176aa|down_5|NZ_CP022578.1_2715914_2716442_-	NA	NA|283aa|down_6|NZ_CP022578.1_2716556_2717405_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|183aa|down_7|NZ_CP022578.1_2717609_2718158_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|71aa|down_8|NZ_CP022578.1_2718306_2718519_-	NA	NA|166aa|down_9|NZ_CP022578.1_2718515_2719013_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	5	2856730-2856806	3	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type V-U4	ACCCGCGCTCACGCCGCACCTCA	23	0	0	NA	NA	NA	1	1	TypeV-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA	NA|104aa|up_9|NZ_CP022578.1_2848663_2848975_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|254aa|up_8|NZ_CP022578.1_2849031_2849793_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|up_7|NZ_CP022578.1_2849836_2850307_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|169aa|up_6|NZ_CP022578.1_2850420_2850927_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|79aa|up_5|NZ_CP022578.1_2851030_2851267_+	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|138aa|up_4|NZ_CP022578.1_2851263_2851677_+	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|412aa|up_3|NZ_CP022578.1_2851927_2853163_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|86aa|up_2|NZ_CP022578.1_2853345_2853603_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_1|NZ_CP022578.1_2853599_2853992_+	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|517aa|up_0|NZ_CP022578.1_2854043_2855594_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|down_0|NZ_CP022578.1_2858326_2859772_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|405aa|down_1|NZ_CP022578.1_2860797_2862012_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|296aa|down_2|NZ_CP022578.1_2862017_2862905_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|266aa|down_3|NZ_CP022578.1_2862906_2863704_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|241aa|down_4|NZ_CP022578.1_2863700_2864423_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|796aa|down_5|NZ_CP022578.1_2864560_2866948_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|878aa|down_6|NZ_CP022578.1_2866970_2869604_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|229aa|down_7|NZ_CP022578.1_2869757_2870444_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|136aa|down_8|NZ_CP022578.1_2870503_2870911_-	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|72aa|down_9|NZ_CP022578.1_2870907_2871123_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	6	3185943-3186039	4	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP022578.1_3171640_3172123_+,NA|101aa|up_1|NZ_CP022578.1_3184901_3185204_-,NA	NA|239aa|up_9|NZ_CP022578.1_3170866_3171583_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP022578.1_3171640_3172123_+	NA	NA|224aa|up_7|NZ_CP022578.1_3172110_3172782_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP022578.1_3172984_3182530_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP022578.1_3182537_3183446_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP022578.1_3183442_3184075_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP022578.1_3184210_3184636_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP022578.1_3184632_3184854_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP022578.1_3184901_3185204_-	NA	NA|76aa|up_0|NZ_CP022578.1_3185200_3185428_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP022578.1_3187524_3188922_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP022578.1_3188931_3189735_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP022578.1_3189723_3190509_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP022578.1_3190615_3191818_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP022578.1_3191804_3192800_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP022578.1_3192796_3194182_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP022578.1_3194178_3195597_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP022578.1_3195643_3196531_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP022578.1_3196541_3196832_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP022578.1_3196861_3197155_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	7	3186120-3186390	5	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	4	4	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP022578.1_3171640_3172123_+,NA|101aa|up_1|NZ_CP022578.1_3184901_3185204_-,NA	NA|239aa|up_9|NZ_CP022578.1_3170866_3171583_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP022578.1_3171640_3172123_+	NA	NA|224aa|up_7|NZ_CP022578.1_3172110_3172782_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP022578.1_3172984_3182530_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP022578.1_3182537_3183446_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP022578.1_3183442_3184075_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP022578.1_3184210_3184636_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP022578.1_3184632_3184854_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP022578.1_3184901_3185204_-	NA	NA|76aa|up_0|NZ_CP022578.1_3185200_3185428_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP022578.1_3187524_3188922_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP022578.1_3188931_3189735_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP022578.1_3189723_3190509_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP022578.1_3190615_3191818_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP022578.1_3191804_3192800_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP022578.1_3192796_3194182_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP022578.1_3194178_3195597_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP022578.1_3195643_3196531_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP022578.1_3196541_3196832_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP022578.1_3196861_3197155_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	8	3186660-3187001	6	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	1	1	3186684-3186704	NZ_CP022578.1_3416532-3416552	NA	5	5	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP022578.1_3171640_3172123_+,NA|101aa|up_1|NZ_CP022578.1_3184901_3185204_-,NA	NA|239aa|up_9|NZ_CP022578.1_3170866_3171583_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP022578.1_3171640_3172123_+	NA	NA|224aa|up_7|NZ_CP022578.1_3172110_3172782_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP022578.1_3172984_3182530_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP022578.1_3182537_3183446_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP022578.1_3183442_3184075_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP022578.1_3184210_3184636_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP022578.1_3184632_3184854_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP022578.1_3184901_3185204_-	NA	NA|76aa|up_0|NZ_CP022578.1_3185200_3185428_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP022578.1_3187524_3188922_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP022578.1_3188931_3189735_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP022578.1_3189723_3190509_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP022578.1_3190615_3191818_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP022578.1_3191804_3192800_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP022578.1_3192796_3194182_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP022578.1_3194178_3195597_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP022578.1_3195643_3196531_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP022578.1_3196541_3196832_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP022578.1_3196861_3197155_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	9	3214234-3215281	4	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CGGNNCCGGCGGNNNCGGCGG	21	1	5	3215198-3215221|3215198-3215221|3215198-3215221|3215198-3215221|3215198-3215221	NZ_CP022578.1_3212192-3212215|NZ_CP022578.1_1125030-1125053|NZ_CP022578.1_2707641-2707618|NZ_CP022578.1_1688317-1688340|NZ_CP022578.1_2621247-2621224	NA	16	16	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|61aa|down_0|NZ_CP022578.1_3215480_3215663_+	NA|97aa|up_9|NZ_CP022578.1_3196541_3196832_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_8|NZ_CP022578.1_3196861_3197155_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|514aa|up_7|NZ_CP022578.1_3197203_3198745_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|103aa|up_6|NZ_CP022578.1_3198747_3199056_-	pfam00934, PE, PE family	NA|1331aa|up_5|NZ_CP022578.1_3199052_3203045_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|539aa|up_4|NZ_CP022578.1_3203041_3204658_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|632aa|up_3|NZ_CP022578.1_3204654_3206550_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|303aa|up_2|NZ_CP022578.1_3206773_3207682_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|537aa|up_1|NZ_CP022578.1_3207705_3209316_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|903aa|up_0|NZ_CP022578.1_3209606_3212315_+	pfam00934, PE, PE family	NA|61aa|down_0|NZ_CP022578.1_3215480_3215663_+	NA	NA|143aa|down_1|NZ_CP022578.1_3215686_3216115_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|307aa|down_2|NZ_CP022578.1_3216154_3217075_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|242aa|down_3|NZ_CP022578.1_3217164_3217890_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|down_4|NZ_CP022578.1_3217819_3218401_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|207aa|down_5|NZ_CP022578.1_3218497_3219118_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|378aa|down_6|NZ_CP022578.1_3219114_3220248_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|732aa|down_7|NZ_CP022578.1_3220361_3222557_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|561aa|down_8|NZ_CP022578.1_3222573_3224256_-	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|398aa|down_9|NZ_CP022578.1_3224291_3225485_+	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	10	3848103-3848191	7	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GGCCGTCATCCGGCCCGCATCGTCGCCGAGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|126aa|up_6|NZ_CP022578.1_3842489_3842867_-,NA|233aa|down_0|NZ_CP022578.1_3848387_3849086_+,NA|257aa|down_6|NZ_CP022578.1_3856833_3857604_+	NA|152aa|up_9|NZ_CP022578.1_3840354_3840810_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|265aa|up_8|NZ_CP022578.1_3840816_3841611_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|225aa|up_7|NZ_CP022578.1_3841716_3842391_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|126aa|up_6|NZ_CP022578.1_3842489_3842867_-	NA	NA|246aa|up_5|NZ_CP022578.1_3842974_3843712_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|228aa|up_4|NZ_CP022578.1_3843711_3844395_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|274aa|up_3|NZ_CP022578.1_3844526_3845348_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|398aa|up_2|NZ_CP022578.1_3845353_3846547_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|328aa|up_1|NZ_CP022578.1_3846539_3847523_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|173aa|up_0|NZ_CP022578.1_3847523_3848042_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|233aa|down_0|NZ_CP022578.1_3848387_3849086_+	NA	NA|652aa|down_1|NZ_CP022578.1_3849121_3851077_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|542aa|down_2|NZ_CP022578.1_3851784_3853410_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_3|NZ_CP022578.1_3853411_3854338_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|288aa|down_4|NZ_CP022578.1_3854330_3855194_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|549aa|down_5|NZ_CP022578.1_3855190_3856837_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|257aa|down_6|NZ_CP022578.1_3856833_3857604_+	NA	NA|288aa|down_7|NZ_CP022578.1_3858358_3859222_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|351aa|down_8|NZ_CP022578.1_3859720_3860773_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|388aa|down_9|NZ_CP022578.1_3860769_3861933_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	11	4009084-4010248	5	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GCCGCCGNNNCCGCCGGNGCCGCCNNNGCCGCCGGNNCCGCCG	43	10	10	4009397-4009416|4009460-4009500|4009544-4009572|4009685-4009719|4009763-4009809|4009853-4009878|4009922-4009959|4010003-4010031|4010075-4010106|4010150-4010205	NZ_CP022578.1_4010612-4010631|NZ_CP022578.1_4010675-4010715|NZ_CP022578.1_4010759-4010787|NZ_CP022578.1_4010294-4010328|NZ_CP022578.1_4010372-4010418|NZ_CP022578.1_4010462-4010487|NZ_CP022578.1_4010531-4010568|NZ_CP022578.1_4010612-4010640|NZ_CP022578.1_4010684-4010715|NZ_CP022578.1_4010759-4010814	NA	14	14	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_2|NZ_CP022578.1_4004947_4005787_-,NA	NA|344aa|up_9|NZ_CP022578.1_3997431_3998463_-	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|395aa|up_8|NZ_CP022578.1_3998504_3999689_-	PRK08313, PRK08313, thiolase domain-containing protein	NA|355aa|up_7|NZ_CP022578.1_3999705_4000770_-	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|304aa|up_6|NZ_CP022578.1_4000785_4001697_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|348aa|up_5|NZ_CP022578.1_4001849_4002893_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_4|NZ_CP022578.1_4002957_4003668_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_3|NZ_CP022578.1_4003696_4004893_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_2|NZ_CP022578.1_4004947_4005787_-	NA	NA|264aa|up_1|NZ_CP022578.1_4005882_4006674_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_0|NZ_CP022578.1_4006747_4008394_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|down_0|NZ_CP022578.1_4013666_4014323_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|279aa|down_1|NZ_CP022578.1_4021233_4022070_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|516aa|down_2|NZ_CP022578.1_4022066_4023614_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1621aa|down_3|NZ_CP022578.1_4023780_4028643_-	pfam00934, PE, PE family	NA|1384aa|down_4|NZ_CP022578.1_4028933_4033085_-	pfam00934, PE, PE family	NA|503aa|down_5|NZ_CP022578.1_4033255_4034764_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_6|NZ_CP022578.1_4034834_4035956_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_7|NZ_CP022578.1_4035980_4037183_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_8|NZ_CP022578.1_4037397_4037589_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_9|NZ_CP022578.1_4037613_4038567_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	12	4028963-4029395	6	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CGCCNGTGCCGCCGNTGCCGCC	22	0	0	NA	NA	NA	7	7	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_6|NZ_CP022578.1_4004947_4005787_-,NA	NA|348aa|up_9|NZ_CP022578.1_4001849_4002893_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_8|NZ_CP022578.1_4002957_4003668_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_7|NZ_CP022578.1_4003696_4004893_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_6|NZ_CP022578.1_4004947_4005787_-	NA	NA|264aa|up_5|NZ_CP022578.1_4005882_4006674_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_4|NZ_CP022578.1_4006747_4008394_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|up_3|NZ_CP022578.1_4013666_4014323_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|279aa|up_2|NZ_CP022578.1_4021233_4022070_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|516aa|up_1|NZ_CP022578.1_4022066_4023614_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1621aa|up_0|NZ_CP022578.1_4023780_4028643_-	pfam00934, PE, PE family	NA|503aa|down_0|NZ_CP022578.1_4033255_4034764_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_1|NZ_CP022578.1_4034834_4035956_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_2|NZ_CP022578.1_4035980_4037183_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_CP022578.1_4037397_4037589_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_4|NZ_CP022578.1_4037613_4038567_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_CP022578.1_4038792_4039557_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_CP022578.1_4039591_4040434_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_CP022578.1_4040453_4041656_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_CP022578.1_4041655_4042708_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|358aa|down_9|NZ_CP022578.1_4042697_4043771_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	13	4030151-4030830	7	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CGTTGCCGCCGTNGCCGCCGTTGCCNCCGTNNCCG	35	0	0	NA	NA	NA	7	7	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_6|NZ_CP022578.1_4004947_4005787_-,NA	NA|348aa|up_9|NZ_CP022578.1_4001849_4002893_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_8|NZ_CP022578.1_4002957_4003668_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_7|NZ_CP022578.1_4003696_4004893_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_6|NZ_CP022578.1_4004947_4005787_-	NA	NA|264aa|up_5|NZ_CP022578.1_4005882_4006674_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_4|NZ_CP022578.1_4006747_4008394_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|up_3|NZ_CP022578.1_4013666_4014323_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|279aa|up_2|NZ_CP022578.1_4021233_4022070_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|516aa|up_1|NZ_CP022578.1_4022066_4023614_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1621aa|up_0|NZ_CP022578.1_4023780_4028643_-	pfam00934, PE, PE family	NA|503aa|down_0|NZ_CP022578.1_4033255_4034764_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_1|NZ_CP022578.1_4034834_4035956_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_2|NZ_CP022578.1_4035980_4037183_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_CP022578.1_4037397_4037589_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_4|NZ_CP022578.1_4037613_4038567_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_CP022578.1_4038792_4039557_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_CP022578.1_4039591_4040434_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_CP022578.1_4040453_4041656_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_CP022578.1_4041655_4042708_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|358aa|down_9|NZ_CP022578.1_4042697_4043771_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	14	4159135-4160403	8	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGNCNCCGCCGNTGCCG	21	0	0	NA	NA	NA	20	20	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|237aa|up_7|NZ_CP022578.1_4150075_4150786_-,NA|205aa|up_6|NZ_CP022578.1_4150784_4151399_+,NA|297aa|down_5|NZ_CP022578.1_4169156_4170047_+	NA|303aa|up_9|NZ_CP022578.1_4147422_4148331_+	TIGR03465, HpnD, squalene synthase HpnD	NA|526aa|up_8|NZ_CP022578.1_4148342_4149920_+	PRK00074, guaA, GMP synthase; Reviewed	NA|237aa|up_7|NZ_CP022578.1_4150075_4150786_-	NA	NA|205aa|up_6|NZ_CP022578.1_4150784_4151399_+	NA	NA|528aa|up_5|NZ_CP022578.1_4151395_4152979_+	cd03468, PolY_like, DNA Polymerase Y-family	NA|309aa|up_4|NZ_CP022578.1_4153033_4153960_-	cd02653, nuc_hydro_3, NH_3: A subgroup of nucleoside hydrolases	NA|288aa|up_3|NZ_CP022578.1_4153983_4154847_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|651aa|up_2|NZ_CP022578.1_4154847_4156800_-	PRK07201, PRK07201, SDR family oxidoreductase	NA|237aa|up_1|NZ_CP022578.1_4156845_4157556_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|291aa|up_0|NZ_CP022578.1_4157629_4158502_+	PLN02864, PLN02864, enoyl-CoA hydratase	NA|103aa|down_0|NZ_CP022578.1_4162459_4162768_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|down_1|NZ_CP022578.1_4162767_4163160_+	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins	NA|421aa|down_2|NZ_CP022578.1_4164620_4165882_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|330aa|down_3|NZ_CP022578.1_4166323_4167313_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|613aa|down_4|NZ_CP022578.1_4167309_4169148_+	PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|297aa|down_5|NZ_CP022578.1_4169156_4170047_+	NA	NA|502aa|down_6|NZ_CP022578.1_4170051_4171557_+	PLN02592, PLN02592, ent-copalyl diphosphate synthase	NA|218aa|down_7|NZ_CP022578.1_4171595_4172249_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|476aa|down_8|NZ_CP022578.1_4172356_4173784_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|83aa|down_9|NZ_CP022578.1_4173788_4174037_-	PRK06144, PRK06144, enoyl-CoA hydratase; Provisional
GCF_003006115.1_ASM300611v1	NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	15	4199806-4199931	2	PILER-CR	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	TTTCAACACCGGCATCGGCAAC	22	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|87aa|up_3|NZ_CP022578.1_4193417_4193678_+,NA|96aa|down_0|NZ_CP022578.1_4206797_4207085_+	NA|397aa|up_9|NZ_CP022578.1_4189879_4191070_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|86aa|up_8|NZ_CP022578.1_4191111_4191369_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|92aa|up_7|NZ_CP022578.1_4191365_4191641_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|282aa|up_6|NZ_CP022578.1_4191764_4192610_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|98aa|up_5|NZ_CP022578.1_4192606_4192900_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|130aa|up_4|NZ_CP022578.1_4192913_4193303_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|87aa|up_3|NZ_CP022578.1_4193417_4193678_+	NA	NA|73aa|up_2|NZ_CP022578.1_4193704_4193923_+	pfam01565, FAD_binding_4, FAD binding domain	NA|124aa|up_1|NZ_CP022578.1_4193820_4194192_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|265aa|up_0|NZ_CP022578.1_4194273_4195068_+	pfam08031, BBE, Berberine and berberine like	NA|96aa|down_0|NZ_CP022578.1_4206797_4207085_+	NA	NA|247aa|down_1|NZ_CP022578.1_4207379_4208120_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|149aa|down_2|NZ_CP022578.1_4208156_4208603_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|3158aa|down_3|NZ_CP022578.1_4209228_4218702_+	pfam00823, PPE, PPE family	NA|86aa|down_4|NZ_CP022578.1_4218957_4219215_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|327aa|down_5|NZ_CP022578.1_4224603_4225584_+	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|244aa|down_6|NZ_CP022578.1_4231631_4232363_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|380aa|down_7|NZ_CP022578.1_4232359_4233499_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|450aa|down_8|NZ_CP022578.1_4233510_4234860_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|410aa|down_9|NZ_CP022578.1_4235142_4236372_+	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase
