The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	4413669	429885	470247	4413669	integrase,transposase,tRNA	Burkholderia_virus(40.0%)	41	429844:429903	470231:471585
429844:429903	attL	TGAACCGCCCCGGTGAGTCCGGAGACTCTCTGATCTGAGACCTCAGCCGGCGGCTGGTCT	NA	NA	NA	NA
WP_087902221.1|429885_431147_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899491.1|432474_433287_-	ExeA family protein	NA	NA	NA	NA	NA
WP_003414198.1|433283_434693_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003414195.1|434763_435372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414190.1|435791_436103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899489.1|436207_436465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899488.1|436698_437853_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_003414184.1|438051_438243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003414181.1|438239_438644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003917684.1|438791_439046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003911993.1|439221_439497_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_003414172.1|439687_440731_+	DUF2293 domain-containing protein	NA	NA	NA	NA	NA
WP_003901465.1|440773_441004_+	antitoxin MazE	NA	NA	NA	NA	NA
WP_003414166.1|440987_441344_+	type II toxin-antitoxin system toxin endoribonuclease MazF9	NA	NA	NA	NA	NA
WP_003899485.1|441445_443095_-	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_003414158.1|443113_443743_-	DUF3558 family protein	NA	NA	NA	NA	NA
WP_003414157.1|443873_444200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414155.1|444203_445892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900574.1|445891_446455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414151.1|446599_447574_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003414149.1|447570_448254_+	4'-phosphopantetheinyl transferase	NA	NA	NA	NA	NA
WP_003414147.1|448250_449147_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003414146.1|449348_449930_+|transposase	IS607-like element IS1602 family transposase	transposase	F9VHY9	Thermus_phage	30.6	5.0e-18
WP_003899482.1|449929_451309_+|transposase	transposase	transposase	A0A7P9	Microcystis_virus	30.3	9.3e-31
WP_003414142.1|451341_452547_+	lipid-transfer protein	NA	NA	NA	NA	NA
WP_003414139.1|452572_453805_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_003414136.1|453865_454552_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA	NA
WP_003414134.1|454636_456400_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_003414131.1|456610_457606_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003414128.1|457762_458032_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003899480.1|458044_458560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003414124.1|458913_461172_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003414119.1|461149_462466_+	insulinase family protein	NA	J3IZ03	Acanthamoeba_polyphaga_lentillevirus	24.4	5.4e-28
WP_003899478.1|462526_463561_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_106420768.1|463575_464691_-	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_003899476.1|464756_465296_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003899475.1|465327_465798_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003414107.1|465955_467026_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003414104.1|467207_468137_+	oxidoreductase	NA	NA	NA	NA	NA
WP_003414102.1|468140_468602_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_087902221.1|468986_470247_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
470231:471585	attR	AGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACGGTGCCCGCGTTGCTGCGGGTCCGTTTCCCGTGGCCGCCCTTCGAACCGGACGTGCGACTTTCACCGTATCTGGCTCTTCACGGAATCTGCCGATGGGGTGGTTCAGACAGCTGCGACAGAACTACCGTGCAGGTCTTTCACCTCCACTCGATCAACAAGCGCCTCACGGCGCACGCCGGGTTTGGTGCAGCCGCGGTCGTTGGCCTCGAGGACGGCCCGGTCTAGGGTGAAGGCCATGCGGGTAGGCGTCCTTGGAGCCAAAGGCAAGGTCGGAGCGACGATGGTGCGGGCGGTGGCGGCCGCCGACGACCTGACCCTATCCGCCGAGCTGGATGCCGGCGATCCGCTGAGCCTGCTAACGGACGGTAACACCGAGGTCGTCATCGACTTCACCCACCCGGACGTGGTGATGGGCAATCTGGAGTTCCTCATCGACAACGGAATTCACGCCGTGGTCGGTACCACGGGGTTCACCGCCGAGCGGTTTCAACAAGTCGAATCGTGGCTCGTCGCAAAACCCAACACATCGGTGTTGATAGCGCCAAACTTCGCGATCGGAGCGGTGCTGTCCATGCATTTCGCCAAGCAGGCCGCACGGTTTTTCGACTCGGCCGAGGTCATTGAGCTGCATCATCCGCACAAGGCTGACGCGCCGTCAGGCACGGCCGCGCGTACCGCGAAGCTGATCGCCGAGGCCCGAAAAGGCTTGCCGCCCAATCCCGATGCCACCAGTACCAGCCTGCCGGGCGCGCGTGGTGCCGACGTCGACGGCATACCGGTGCACGCGGTGCGGCTGGCCGGACTGGTCGCCCACCAGGAGGTGCTGTTCGGGACCGAGGGGGAGACTCTGACCATCCGCCACGATAGCCTCGATCGCACATCGTTTGTGCCCGGTGTGCTGTTGGCGGTGCGCCGCATCGCCGAACGCCCTGGTCTCACCGTAGGTCTTGAGCCCCTACTCGATCTGCACTGACCGACACTGTGATGACCAGGCGCACCCTGTATGTCCAGTTGATAATCGCGTTCATGTGCGTGGCGATGGTGGCGTACCTGGTTATGCTCGGGCGTGTCGCCGTCGCAATGATCGGTTCGGGCCGCGCCGCGGCTGCCGGGCTGGGGCTGGCGCTGCTGATCCTGCCGGTCATTGGGCTGTGGGCCATGATTGCCACGCTGCGGGCCGGATTCGCGTATCAGCGGCTGGCCCGTCTGATCGCCGAAGACGGACTGGACATCGACGCCAGCGCGCTGCCCCGCCGGGCTTCTGGCCGCATTCAGCGAGACGCGGCCGATGCG	NA	NA	NA	NA
>prophage 2
NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	4413669	568455	581201	4413669	terminase,protease,capsid,integrase,head	Mycobacterium_phage(57.14%)	20	572112:572139	581736:581763
WP_003413845.1|568455_569214_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A249XSS8	Mycobacterium_phage	40.8	4.7e-16
WP_003899423.1|570129_570411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413719.1|570758_571013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413717.1|571023_571257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003900544.1|571355_571628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899422.1|571533_571923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899421.1|571919_572147_+	hypothetical protein	NA	NA	NA	NA	NA
572112:572139	attL	TGGTGCGCGATACTGGGATTGAACCAGT	NA	NA	NA	NA
WP_003899420.1|572291_573419_+|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
WP_003900543.1|573421_573784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899418.1|573800_574061_+	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	64.6	3.0e-15
WP_003899417.1|574057_574450_+	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_003899416.1|574451_575879_+	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899415.1|575875_576121_+	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899414.1|576200_576524_+	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899413.1|576555_577182_+|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899412.1|577334_577868_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003901443.1|577875_579315_+|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003908028.1|579485_579737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003900539.1|579724_580189_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003900538.1|580202_581201_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
581736:581763	attR	TGGTGCGCGATACTGGGATTGAACCAGT	NA	NA	NA	NA
>prophage 4
NZ_CP022578	Mycobacterium tuberculosis strain WC059 chromosome, complete genome	4413669	4164620	4249238	4413669	protease,transposase,tRNA	Pandoravirus(33.33%)	55	NA	NA
WP_087902221.1|4164620_4165882_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003417912.1|4166323_4167313_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_003918607.1|4167309_4169148_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003417908.1|4169156_4170047_+	diterpene synthase	NA	NA	NA	NA	NA
WP_003417905.1|4170051_4171557_+	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417903.1|4171595_4172249_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417900.1|4172356_4173784_-	amidase	NA	NA	NA	NA	NA
WP_003417897.1|4173788_4174037_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003900037.1|4174037_4174679_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417895.1|4174757_4174862_-	PE family protein	NA	NA	NA	NA	NA
WP_003417892.1|4174915_4176091_-	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003900036.1|4176132_4177473_-	diacyglycerol O-acyltransferase	NA	NA	NA	NA	NA
WP_003908228.1|4177664_4180904_+	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003417882.1|4180992_4181427_-	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003417881.1|4181425_4182070_+	nitroreductase family protein	NA	NA	NA	NA	NA
WP_009938654.1|4182070_4183846_-	PE family protein	NA	NA	NA	NA	NA
WP_003901617.1|4184212_4184677_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_003901616.1|4184912_4187543_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417776.1|4187539_4187932_+	roadblock/LC7 domain-containing protein	NA	NA	NA	NA	NA
WP_003417772.1|4187909_4188278_+	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417769.1|4188258_4188840_+	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417767.1|4188846_4189398_+	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417765.1|4189394_4189763_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003900033.1|4189879_4191070_-	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417760.1|4191111_4191369_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003417757.1|4191365_4191641_-	type II toxin-antitoxin system antitoxin RelJ	NA	NA	NA	NA	NA
WP_003417751.1|4191764_4192610_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417749.1|4192606_4192900_+	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417745.1|4192913_4193303_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417741.1|4193417_4193678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157132559.1|4193704_4193923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|4193820_4194192_+	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_003417738.1|4194273_4195068_+	BBE domain-containing protein	NA	NA	NA	NA	NA
WP_009938650.1|4206797_4207085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003911006.1|4207379_4208120_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_049961743.1|4208156_4208603_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_003901612.1|4209228_4218702_+	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|4218957_4219215_+	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_031654342.1|4224603_4225584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417461.1|4231631_4232363_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003417458.1|4232359_4233499_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003900028.1|4233510_4234860_-	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417452.1|4235142_4236372_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003905041.1|4236438_4237083_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417440.1|4237355_4238366_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003417435.1|4238386_4239256_+	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003900026.1|4239289_4239730_-	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417421.1|4240204_4241050_+|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003417418.1|4241240_4242392_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417416.1|4242388_4243897_-	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417415.1|4243992_4245210_-	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003902446.1|4245278_4246646_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417413.1|4246654_4247593_+	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003902445.1|4247525_4249055_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009937401.1|4249076_4249238_-|transposase	transposase	transposase	NA	NA	NA	NA
