assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003004315.1_ASM300431v1	NZ_CP021286	Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) chromosome, complete genome	1	189827-192944	1,1	CRISPRCasFinder,CRT	no	cas9,cas1,cas2,cas4	cas9,cas1,cas2,cas4,cas3,DEDDh,DinG,RT,WYL,csa3	Type II-B,Type II-A,Type II-C	CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC,CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC	37,37	0	0	NA	NA	NA:NA	43,43	43	TypeII-B,TypeII-A,TypeII-C	cas9,cas1,cas2,cas4,cas3,DEDDh,DinG,RT,WYL,csa3,PD-DExK	NA|445aa|up_6|NZ_CP021286.1_178571_179906_+,NA|107aa|up_4|NZ_CP021286.1_182827_183148_+,NA|290aa|down_2|NZ_CP021286.1_194558_195428_+,NA|121aa|down_3|NZ_CP021286.1_195393_195756_+,NA|49aa|down_8|NZ_CP021286.1_199749_199896_+,NA|132aa|down_9|NZ_CP021286.1_199892_200288_+	NA|397aa|up_9|NZ_CP021286.1_174033_175224_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|331aa|up_8|NZ_CP021286.1_175234_176227_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|669aa|up_7|NZ_CP021286.1_176307_178314_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|445aa|up_6|NZ_CP021286.1_178571_179906_+	NA	NA|672aa|up_5|NZ_CP021286.1_180005_182021_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|107aa|up_4|NZ_CP021286.1_182827_183148_+	NA	cas9|1373aa|up_3|NZ_CP021286.1_183623_187742_+	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	cas1|331aa|up_2|NZ_CP021286.1_187738_188731_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|100aa|up_1|NZ_CP021286.1_188737_189037_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|198aa|up_0|NZ_CP021286.1_189017_189611_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|146aa|down_0|NZ_CP021286.1_193295_193733_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|225aa|down_1|NZ_CP021286.1_193722_194397_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|290aa|down_2|NZ_CP021286.1_194558_195428_+	NA	NA|121aa|down_3|NZ_CP021286.1_195393_195756_+	NA	NA|68aa|down_4|NZ_CP021286.1_195768_195972_+	pfam02599, CsrA, Global regulator protein family	NA|95aa|down_5|NZ_CP021286.1_195986_196271_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|94aa|down_6|NZ_CP021286.1_196280_196562_+	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|237aa|down_7|NZ_CP021286.1_199024_199735_+	cd14262, VirB5_like, VirB5 protein family	NA|49aa|down_8|NZ_CP021286.1_199749_199896_+	NA	NA|132aa|down_9|NZ_CP021286.1_199892_200288_+	NA
GCF_003004315.1_ASM300431v1	NZ_CP021286	Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) chromosome, complete genome	2	2334334-2334462	2	CRISPRCasFinder	no	cas3	cas9,cas1,cas2,cas4,cas3,DEDDh,DinG,RT,WYL,csa3	Unclear	CTATTCTTAATGCTCAACAGAATAAAAAACAACAGA	36	0	0	NA	NA	NA	1	1	Unclear	cas9,cas1,cas2,cas4,cas3,DEDDh,DinG,RT,WYL,csa3,PD-DExK	NA|104aa|up_7|NZ_CP021286.1_2324557_2324869_+,NA|134aa|up_3|NZ_CP021286.1_2328802_2329204_-,NA|651aa|up_0|NZ_CP021286.1_2331826_2333779_-,NA|251aa|down_3|NZ_CP021286.1_2337700_2338453_-,NA|360aa|down_7|NZ_CP021286.1_2344824_2345904_+	NA|318aa|up_9|NZ_CP021286.1_2319732_2320686_-	pfam07751, Abi_2, Abi-like protein	NA|392aa|up_8|NZ_CP021286.1_2321240_2322416_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|104aa|up_7|NZ_CP021286.1_2324557_2324869_+	NA	NA|70aa|up_6|NZ_CP021286.1_2325607_2325817_+	COG1278, CspC, Cold shock proteins [Transcription]	cas3|469aa|up_5|NZ_CP021286.1_2326056_2327463_+	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|304aa|up_4|NZ_CP021286.1_2327619_2328531_+	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|134aa|up_3|NZ_CP021286.1_2328802_2329204_-	NA	NA|361aa|up_2|NZ_CP021286.1_2329219_2330302_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|250aa|up_1|NZ_CP021286.1_2330335_2331085_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|651aa|up_0|NZ_CP021286.1_2331826_2333779_-	NA	NA|88aa|down_0|NZ_CP021286.1_2335979_2336243_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|98aa|down_1|NZ_CP021286.1_2336414_2336708_-	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|262aa|down_2|NZ_CP021286.1_2336733_2337519_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|251aa|down_3|NZ_CP021286.1_2337700_2338453_-	NA	NA|607aa|down_4|NZ_CP021286.1_2338891_2340712_+	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins	NA|97aa|down_5|NZ_CP021286.1_2340955_2341246_-	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|581aa|down_6|NZ_CP021286.1_2342584_2344327_+	sd00045, ANK, ankyrin repeats	NA|360aa|down_7|NZ_CP021286.1_2344824_2345904_+	NA	NA|302aa|down_8|NZ_CP021286.1_2346202_2347108_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|585aa|down_9|NZ_CP021286.1_2347322_2349077_-	sd00045, ANK, ankyrin repeats
GCF_003004315.1_ASM300431v1	NZ_CP021286	Legionella pneumophila subsp. pneumophila strain Albuquerque 1 (D-7474) chromosome, complete genome	3	3083083-3083577	2	CRT	no		cas9,cas1,cas2,cas4,cas3,DEDDh,DinG,RT,WYL,csa3	Orphan	CAGGGATTACCAGGCCCTAAAGGAGAC	27	0	0	NA	NA	NA	10	10	Orphan	cas9,cas1,cas2,cas4,cas3,DEDDh,DinG,RT,WYL,csa3,PD-DExK	NA|404aa|up_6|NZ_CP021286.1_3070875_3072087_-,NA|461aa|up_5|NZ_CP021286.1_3072438_3073821_-,NA|189aa|up_3|NZ_CP021286.1_3077856_3078423_-,NA|220aa|up_0|NZ_CP021286.1_3082090_3082750_+,NA	NA|455aa|up_9|NZ_CP021286.1_3067250_3068615_-	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains	NA|524aa|up_8|NZ_CP021286.1_3068619_3070191_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|89aa|up_7|NZ_CP021286.1_3070548_3070815_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|404aa|up_6|NZ_CP021286.1_3070875_3072087_-	NA	NA|461aa|up_5|NZ_CP021286.1_3072438_3073821_-	NA	NA|1201aa|up_4|NZ_CP021286.1_3074227_3077830_-	sd00010, SLR, Sel1-like repeat	NA|189aa|up_3|NZ_CP021286.1_3077856_3078423_-	NA	NA|241aa|up_2|NZ_CP021286.1_3078419_3079142_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|836aa|up_1|NZ_CP021286.1_3079314_3081822_+	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP021286.1_3082090_3082750_+	NA	NA|619aa|down_0|NZ_CP021286.1_3084089_3085946_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|273aa|down_1|NZ_CP021286.1_3086742_3087561_-	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|366aa|down_2|NZ_CP021286.1_3088000_3089098_+	cd00885, cinA, Competence-damaged protein	NA|342aa|down_3|NZ_CP021286.1_3089056_3090082_-	PRK12298, obgE, GTPase CgtA; Reviewed	NA|93aa|down_4|NZ_CP021286.1_3090295_3090574_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|104aa|down_5|NZ_CP021286.1_3090586_3090898_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|220aa|down_6|NZ_CP021286.1_3091140_3091800_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|190aa|down_7|NZ_CP021286.1_3091916_3092486_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|364aa|down_8|NZ_CP021286.1_3092504_3093596_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|372aa|down_9|NZ_CP021286.1_3093957_3095073_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
