assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003004295.1_ASM300429v1	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	1	25774-26221	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,29	0	0	NA	NA	I-F:I-F:I-F	7,7,3	7	TypeI-F	cas3,DEDDh,DinG,WYL,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA|54aa|up_5|NZ_CP021285.1_20463_20625_-,NA|178aa|up_4|NZ_CP021285.1_21197_21731_-,NA|97aa|up_3|NZ_CP021285.1_22997_23288_+,NA|175aa|up_2|NZ_CP021285.1_23278_23803_+,NA|127aa|down_1|NZ_CP021285.1_28497_28878_-	NA|108aa|up_9|NZ_CP021285.1_16926_17250_+	pfam07878, RHH_5, CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	NA|135aa|up_8|NZ_CP021285.1_17821_18226_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|66aa|up_7|NZ_CP021285.1_18222_18420_-	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|288aa|up_6|NZ_CP021285.1_19291_20155_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|54aa|up_5|NZ_CP021285.1_20463_20625_-	NA	NA|178aa|up_4|NZ_CP021285.1_21197_21731_-	NA	NA|97aa|up_3|NZ_CP021285.1_22997_23288_+	NA	NA|175aa|up_2|NZ_CP021285.1_23278_23803_+	NA	NA|144aa|up_1|NZ_CP021285.1_24031_24463_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|189aa|up_0|NZ_CP021285.1_24691_25258_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|696aa|down_0|NZ_CP021285.1_26408_28496_+	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I	NA|127aa|down_1|NZ_CP021285.1_28497_28878_-	NA	NA|187aa|down_2|NZ_CP021285.1_29097_29658_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|106aa|down_3|NZ_CP021285.1_29668_29986_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|87aa|down_4|NZ_CP021285.1_29940_30201_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|1015aa|down_5|NZ_CP021285.1_30371_33416_+	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	cas6f|185aa|down_6|NZ_CP021285.1_36522_37077_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|342aa|down_7|NZ_CP021285.1_37087_38113_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|314aa|down_8|NZ_CP021285.1_38128_39070_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|422aa|down_9|NZ_CP021285.1_39066_40332_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1
GCF_003004295.1_ASM300429v1	NZ_CP021285	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence	2	33502-36291	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	46,46,45	46	TypeI-F	cas3,DEDDh,DinG,WYL,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA|97aa|up_9|NZ_CP021285.1_22997_23288_+,NA|175aa|up_8|NZ_CP021285.1_23278_23803_+,NA|127aa|up_4|NZ_CP021285.1_28497_28878_-,NA|326aa|down_7|NZ_CP021285.1_45213_46191_-	NA|97aa|up_9|NZ_CP021285.1_22997_23288_+	NA	NA|175aa|up_8|NZ_CP021285.1_23278_23803_+	NA	NA|144aa|up_7|NZ_CP021285.1_24031_24463_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|189aa|up_6|NZ_CP021285.1_24691_25258_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|696aa|up_5|NZ_CP021285.1_26408_28496_+	NF033176, auto_AIDA-I, autotransporter adhesin AIDA-I	NA|127aa|up_4|NZ_CP021285.1_28497_28878_-	NA	NA|187aa|up_3|NZ_CP021285.1_29097_29658_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|106aa|up_2|NZ_CP021285.1_29668_29986_-	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|87aa|up_1|NZ_CP021285.1_29940_30201_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|1015aa|up_0|NZ_CP021285.1_30371_33416_+	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	cas6f|185aa|down_0|NZ_CP021285.1_36522_37077_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|342aa|down_1|NZ_CP021285.1_37087_38113_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|314aa|down_2|NZ_CP021285.1_38128_39070_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|422aa|down_3|NZ_CP021285.1_39066_40332_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3-cas2|1132aa|down_4|NZ_CP021285.1_40324_43720_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|323aa|down_5|NZ_CP021285.1_43716_44685_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|91aa|down_6|NZ_CP021285.1_44871_45144_-	COG1961, PinR, Site-specific recombinases, DNA invertase Pin homologs [DNA replication, recombination, and repair]	NA|326aa|down_7|NZ_CP021285.1_45213_46191_-	NA	NA|426aa|down_8|NZ_CP021285.1_46615_47893_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|169aa|down_9|NZ_CP021285.1_47879_48386_-	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit
GCF_003004295.1_ASM300429v1	NZ_CP021283	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) chromosome, complete genome	1	1679790-1679903	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,WYL,csa3	Orphan	CCTGGCAGCAGCGCTGATCAGCATTCC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,WYL,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	NA|354aa|up_8|NZ_CP021283.1_1667059_1668121_-,NA|475aa|up_4|NZ_CP021283.1_1673054_1674479_+,NA|327aa|down_3|NZ_CP021283.1_1684072_1685053_-	NA|440aa|up_9|NZ_CP021283.1_1665575_1666895_-	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase	NA|354aa|up_8|NZ_CP021283.1_1667059_1668121_-	NA	NA|473aa|up_7|NZ_CP021283.1_1668567_1669986_+	pfam14706, Tnp_DNA_bind, Transposase DNA-binding	NA|392aa|up_6|NZ_CP021283.1_1670021_1671197_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|428aa|up_5|NZ_CP021283.1_1671296_1672580_-	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	NA|475aa|up_4|NZ_CP021283.1_1673054_1674479_+	NA	NA|226aa|up_3|NZ_CP021283.1_1674549_1675227_-	pfam08808, RES, RES domain	NA|125aa|up_2|NZ_CP021283.1_1675228_1675603_-	pfam09722, DUF2384, Protein of unknown function (DUF2384)	NA|220aa|up_1|NZ_CP021283.1_1675815_1676475_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|772aa|up_0|NZ_CP021283.1_1676712_1679028_+	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase	NA|418aa|down_0|NZ_CP021283.1_1680840_1682094_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|357aa|down_1|NZ_CP021283.1_1682102_1683173_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|142aa|down_2|NZ_CP021283.1_1683358_1683784_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|327aa|down_3|NZ_CP021283.1_1684072_1685053_-	NA	NA|316aa|down_4|NZ_CP021283.1_1685403_1686351_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|251aa|down_5|NZ_CP021283.1_1686601_1687354_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|176aa|down_6|NZ_CP021283.1_1687419_1687947_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|319aa|down_7|NZ_CP021283.1_1687943_1688900_-	pfam04229, GrpB, GrpB protein	NA|595aa|down_8|NZ_CP021283.1_1688899_1690684_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|487aa|down_9|NZ_CP021283.1_1690676_1692137_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
