assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003004275.1_ASM300427v1	NZ_CP021281	Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) chromosome, complete genome	1	189831-192808	1,1	CRISPRCasFinder,CRT	no	cas9,cas1,cas2,cas4	cas9,cas1,cas2,cas4,cas3,DEDDh,csa3,RT,WYL	Type II-A,Type II-C,Type II-B	CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC,CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC	37,37	0	0	NA	NA	NA:NA	41,41	41	TypeII-A,TypeII-C,TypeII-B	cas9,cas1,cas2,cas4,cas3,DEDDh,csa3,RT,WYL,PD-DExK	NA|445aa|up_6|NZ_CP021281.1_178575_179910_+,NA|107aa|up_4|NZ_CP021281.1_182831_183152_+,NA|290aa|down_2|NZ_CP021281.1_194422_195292_+,NA|121aa|down_3|NZ_CP021281.1_195257_195620_+,NA|49aa|down_9|NZ_CP021281.1_199614_199761_+	NA|397aa|up_9|NZ_CP021281.1_174037_175228_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|331aa|up_8|NZ_CP021281.1_175238_176231_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|669aa|up_7|NZ_CP021281.1_176311_178318_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|445aa|up_6|NZ_CP021281.1_178575_179910_+	NA	NA|672aa|up_5|NZ_CP021281.1_180009_182025_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)	NA|107aa|up_4|NZ_CP021281.1_182831_183152_+	NA	cas9|1373aa|up_3|NZ_CP021281.1_183627_187746_+	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	cas1|331aa|up_2|NZ_CP021281.1_187742_188735_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|100aa|up_1|NZ_CP021281.1_188741_189041_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|198aa|up_0|NZ_CP021281.1_189021_189615_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|146aa|down_0|NZ_CP021281.1_193159_193597_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|225aa|down_1|NZ_CP021281.1_193586_194261_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|290aa|down_2|NZ_CP021281.1_194422_195292_+	NA	NA|121aa|down_3|NZ_CP021281.1_195257_195620_+	NA	NA|68aa|down_4|NZ_CP021281.1_195632_195836_+	pfam02599, CsrA, Global regulator protein family	NA|95aa|down_5|NZ_CP021281.1_195850_196135_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|94aa|down_6|NZ_CP021281.1_196144_196426_+	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|827aa|down_7|NZ_CP021281.1_196412_198893_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|237aa|down_8|NZ_CP021281.1_198889_199600_+	cd14262, VirB5_like, VirB5 protein family	NA|49aa|down_9|NZ_CP021281.1_199614_199761_+	NA
GCF_003004275.1_ASM300427v1	NZ_CP021281	Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) chromosome, complete genome	2	2401901-2402029	2	CRISPRCasFinder	no	cas3	cas9,cas1,cas2,cas4,cas3,DEDDh,csa3,RT,WYL	Unclear	CTATTCTTAATGCTCAACAGAATAAAAAACAACAGA	36	0	0	NA	NA	NA	1	1	Unclear	cas9,cas1,cas2,cas4,cas3,DEDDh,csa3,RT,WYL,PD-DExK	NA|104aa|up_7|NZ_CP021281.1_2392124_2392436_+,NA|134aa|up_3|NZ_CP021281.1_2396369_2396771_-,NA|651aa|up_0|NZ_CP021281.1_2399393_2401346_-,NA|251aa|down_3|NZ_CP021281.1_2405267_2406020_-,NA|360aa|down_7|NZ_CP021281.1_2412391_2413471_+	NA|392aa|up_9|NZ_CP021281.1_2388806_2389982_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|586aa|up_8|NZ_CP021281.1_2390047_2391805_-	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|104aa|up_7|NZ_CP021281.1_2392124_2392436_+	NA	NA|70aa|up_6|NZ_CP021281.1_2393174_2393384_+	COG1278, CspC, Cold shock proteins [Transcription]	cas3|469aa|up_5|NZ_CP021281.1_2393623_2395030_+	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional	NA|304aa|up_4|NZ_CP021281.1_2395186_2396098_+	COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|134aa|up_3|NZ_CP021281.1_2396369_2396771_-	NA	NA|361aa|up_2|NZ_CP021281.1_2396786_2397869_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|250aa|up_1|NZ_CP021281.1_2397902_2398652_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|651aa|up_0|NZ_CP021281.1_2399393_2401346_-	NA	NA|88aa|down_0|NZ_CP021281.1_2403546_2403810_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|98aa|down_1|NZ_CP021281.1_2403981_2404275_-	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|262aa|down_2|NZ_CP021281.1_2404300_2405086_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|251aa|down_3|NZ_CP021281.1_2405267_2406020_-	NA	NA|607aa|down_4|NZ_CP021281.1_2406458_2408279_+	cd15457, NADAR, Escherichia coli swarming motility protein YbiA and related proteins	NA|97aa|down_5|NZ_CP021281.1_2408522_2408813_-	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|581aa|down_6|NZ_CP021281.1_2410151_2411894_+	sd00045, ANK, ankyrin repeats	NA|360aa|down_7|NZ_CP021281.1_2412391_2413471_+	NA	NA|302aa|down_8|NZ_CP021281.1_2413769_2414675_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|585aa|down_9|NZ_CP021281.1_2414889_2416644_-	sd00045, ANK, ankyrin repeats
GCF_003004275.1_ASM300427v1	NZ_CP021281	Legionella pneumophila subsp. pneumophila strain Flint 2 (D-7477) chromosome, complete genome	3	3164165-3164659	2	CRT	no		cas9,cas1,cas2,cas4,cas3,DEDDh,csa3,RT,WYL	Orphan	CAGGGATTACCAGGCCCTAAAGGAGAC	27	0	0	NA	NA	NA	10	10	Orphan	cas9,cas1,cas2,cas4,cas3,DEDDh,csa3,RT,WYL,PD-DExK	NA|404aa|up_6|NZ_CP021281.1_3151957_3153169_-,NA|461aa|up_5|NZ_CP021281.1_3153520_3154903_-,NA|189aa|up_3|NZ_CP021281.1_3158938_3159505_-,NA|220aa|up_0|NZ_CP021281.1_3163172_3163832_+,NA	NA|455aa|up_9|NZ_CP021281.1_3148332_3149697_-	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains	NA|524aa|up_8|NZ_CP021281.1_3149701_3151273_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|89aa|up_7|NZ_CP021281.1_3151630_3151897_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|404aa|up_6|NZ_CP021281.1_3151957_3153169_-	NA	NA|461aa|up_5|NZ_CP021281.1_3153520_3154903_-	NA	NA|1201aa|up_4|NZ_CP021281.1_3155309_3158912_-	sd00010, SLR, Sel1-like repeat	NA|189aa|up_3|NZ_CP021281.1_3158938_3159505_-	NA	NA|241aa|up_2|NZ_CP021281.1_3159501_3160224_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|836aa|up_1|NZ_CP021281.1_3160396_3162904_+	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP021281.1_3163172_3163832_+	NA	NA|619aa|down_0|NZ_CP021281.1_3165171_3167028_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|220aa|down_1|NZ_CP021281.1_3167039_3167699_-	PRK09483, PRK09483, response regulator; Provisional	NA|273aa|down_2|NZ_CP021281.1_3167823_3168642_-	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|366aa|down_3|NZ_CP021281.1_3169081_3170179_+	cd00885, cinA, Competence-damaged protein	NA|342aa|down_4|NZ_CP021281.1_3170137_3171163_-	PRK12298, obgE, GTPase CgtA; Reviewed	NA|93aa|down_5|NZ_CP021281.1_3171376_3171655_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|104aa|down_6|NZ_CP021281.1_3171667_3171979_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|220aa|down_7|NZ_CP021281.1_3172221_3172881_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|190aa|down_8|NZ_CP021281.1_3172997_3173567_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|364aa|down_9|NZ_CP021281.1_3173585_3174677_+	PRK09601, PRK09601, redox-regulated ATPase YchF
