assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003004255.1_ASM300425v1	NZ_CP021279	Legionella pneumophila subsp. fraseri strain F-4198 chromosome, complete genome	1	200541-201302	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas9	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	Type II-A,Type II-C,Type II-B	GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG	37,37,37	0	0	NA	NA	NA:NA:NA	10,10,9	10	TypeII-A,TypeII-C,TypeII-B	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	NA|132aa|up_9|NZ_CP021279.1_193644_194040_-,NA|49aa|up_8|NZ_CP021279.1_194036_194183_-,NA|121aa|up_2|NZ_CP021279.1_198165_198528_-,NA|290aa|up_1|NZ_CP021279.1_198493_199363_-,NA|111aa|down_5|NZ_CP021279.1_208355_208688_+,NA|56aa|down_7|NZ_CP021279.1_209860_210028_-,NA|69aa|down_8|NZ_CP021279.1_210268_210475_+	NA|132aa|up_9|NZ_CP021279.1_193644_194040_-	NA	NA|49aa|up_8|NZ_CP021279.1_194036_194183_-	NA	NA|237aa|up_7|NZ_CP021279.1_194197_194908_-	cd14262, VirB5_like, VirB5 protein family	NA|827aa|up_6|NZ_CP021279.1_194904_197385_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|94aa|up_5|NZ_CP021279.1_197371_197653_-	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|97aa|up_4|NZ_CP021279.1_197662_197953_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|68aa|up_3|NZ_CP021279.1_197949_198153_-	pfam02599, CsrA, Global regulator protein family	NA|121aa|up_2|NZ_CP021279.1_198165_198528_-	NA	NA|290aa|up_1|NZ_CP021279.1_198493_199363_-	NA	NA|222aa|up_0|NZ_CP021279.1_199526_200192_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	cas4|198aa|down_0|NZ_CP021279.1_201517_202111_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|100aa|down_1|NZ_CP021279.1_202091_202391_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_2|NZ_CP021279.1_202397_203390_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas9|1373aa|down_3|NZ_CP021279.1_203386_207505_-	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|73aa|down_4|NZ_CP021279.1_207676_207895_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|111aa|down_5|NZ_CP021279.1_208355_208688_+	NA	NA|317aa|down_6|NZ_CP021279.1_208677_209628_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|56aa|down_7|NZ_CP021279.1_209860_210028_-	NA	NA|69aa|down_8|NZ_CP021279.1_210268_210475_+	NA	NA|402aa|down_9|NZ_CP021279.1_210423_211629_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
GCF_003004255.1_ASM300425v1	NZ_CP021279	Legionella pneumophila subsp. fraseri strain F-4198 chromosome, complete genome	2	1719890-1720010	2	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	Orphan	CCTGGCAGCAGCGCTGATCAGCATTCCAAAAAGC	34	0	0	NA	NA	NA	1	1	Orphan	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	NA|475aa|up_5|NZ_CP021279.1_1713152_1714577_+,NA|62aa|up_0|NZ_CP021279.1_1719493_1719679_-,NA|327aa|down_3|NZ_CP021279.1_1724180_1725161_-	NA|245aa|up_9|NZ_CP021279.1_1706974_1707709_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|673aa|up_8|NZ_CP021279.1_1707769_1709788_-	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|440aa|up_7|NZ_CP021279.1_1709780_1711100_-	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase	NA|355aa|up_6|NZ_CP021279.1_1711263_1712328_-	pfam18493, DUF5617, Domain of unknown function (DUF5617)	NA|475aa|up_5|NZ_CP021279.1_1713152_1714577_+	NA	NA|226aa|up_4|NZ_CP021279.1_1714687_1715365_-	pfam08808, RES, RES domain	NA|125aa|up_3|NZ_CP021279.1_1715366_1715741_-	pfam09722, DUF2384, Protein of unknown function (DUF2384)	NA|219aa|up_2|NZ_CP021279.1_1715927_1716584_+	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|772aa|up_1|NZ_CP021279.1_1716804_1719120_+	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	NA|62aa|up_0|NZ_CP021279.1_1719493_1719679_-	NA	NA|418aa|down_0|NZ_CP021279.1_1720949_1722203_-	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|357aa|down_1|NZ_CP021279.1_1722211_1723282_-	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|142aa|down_2|NZ_CP021279.1_1723465_1723891_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|327aa|down_3|NZ_CP021279.1_1724180_1725161_-	NA	NA|316aa|down_4|NZ_CP021279.1_1725511_1726459_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|250aa|down_5|NZ_CP021279.1_1726782_1727532_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|176aa|down_6|NZ_CP021279.1_1727597_1728125_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|319aa|down_7|NZ_CP021279.1_1728121_1729078_-	pfam04229, GrpB, GrpB protein	NA|594aa|down_8|NZ_CP021279.1_1729081_1730863_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|487aa|down_9|NZ_CP021279.1_1730855_1732316_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
GCF_003004255.1_ASM300425v1	NZ_CP021279	Legionella pneumophila subsp. fraseri strain F-4198 chromosome, complete genome	3	2651506-2651678	3	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	Orphan	TCGAATAAATTTACCGCCATAACAGTAATTT	31	0	0	NA	NA	NA	2	2	Orphan	cas4,cas2,cas1,cas9,RT,cas3,PD-DExK,DinG,DEDDh,WYL,csa3	NA|341aa|up_9|NZ_CP021279.1_2642893_2643916_-,NA|158aa|up_1|NZ_CP021279.1_2649678_2650152_+,NA|388aa|down_3|NZ_CP021279.1_2653460_2654624_+,NA|119aa|down_6|NZ_CP021279.1_2656693_2657050_+,NA|301aa|down_8|NZ_CP021279.1_2658603_2659506_-,NA|485aa|down_9|NZ_CP021279.1_2659667_2661122_+	NA|341aa|up_9|NZ_CP021279.1_2642893_2643916_-	NA	NA|76aa|up_8|NZ_CP021279.1_2644411_2644639_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|407aa|up_7|NZ_CP021279.1_2644625_2645846_+	cd17793, HipA, type II toxin-antitoxin sytem toxin HipA and similar proteins	NA|119aa|up_6|NZ_CP021279.1_2645880_2646237_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|302aa|up_5|NZ_CP021279.1_2646276_2647182_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|287aa|up_4|NZ_CP021279.1_2647272_2648133_+	pfam11019, DUF2608, Protein of unknown function (DUF2608)	NA|104aa|up_3|NZ_CP021279.1_2648796_2649108_-	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|83aa|up_2|NZ_CP021279.1_2649123_2649372_-	PRK07206, PRK07206, hypothetical protein; Provisional	NA|158aa|up_1|NZ_CP021279.1_2649678_2650152_+	NA	NA|306aa|up_0|NZ_CP021279.1_2650341_2651259_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|76aa|down_0|NZ_CP021279.1_2651699_2651927_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|103aa|down_1|NZ_CP021279.1_2651923_2652232_+	TIGR03071, couple_hipA, HipA N-terminal domain	NA|313aa|down_2|NZ_CP021279.1_2652228_2653167_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|388aa|down_3|NZ_CP021279.1_2653460_2654624_+	NA	NA|396aa|down_4|NZ_CP021279.1_2654615_2655803_-	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|56aa|down_5|NZ_CP021279.1_2655927_2656095_-	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|119aa|down_6|NZ_CP021279.1_2656693_2657050_+	NA	NA|214aa|down_7|NZ_CP021279.1_2657418_2658060_-	pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase	NA|301aa|down_8|NZ_CP021279.1_2658603_2659506_-	NA	NA|485aa|down_9|NZ_CP021279.1_2659667_2661122_+	NA
