assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003003865.1_ASM300386v1	NZ_CP021257	Legionella pneumophila subsp. fraseri strain Lansing 3 chromosome, complete genome	1	206564-207540	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas9	cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	Type II-A,Type II-C,Type II-B	GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG	37,37,37	0	0	NA	NA	NA:NA:NA	13,13,12	13	TypeII-A,TypeII-C,TypeII-B	cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	NA|132aa|up_9|NZ_CP021257.1_199667_200063_-,NA|49aa|up_8|NZ_CP021257.1_200059_200206_-,NA|121aa|up_2|NZ_CP021257.1_204188_204551_-,NA|290aa|up_1|NZ_CP021257.1_204516_205386_-,NA|111aa|down_5|NZ_CP021257.1_214593_214926_+,NA|114aa|down_7|NZ_CP021257.1_216098_216440_-	NA|132aa|up_9|NZ_CP021257.1_199667_200063_-	NA	NA|49aa|up_8|NZ_CP021257.1_200059_200206_-	NA	NA|237aa|up_7|NZ_CP021257.1_200220_200931_-	cd14262, VirB5_like, VirB5 protein family	NA|827aa|up_6|NZ_CP021257.1_200927_203408_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|94aa|up_5|NZ_CP021257.1_203394_203676_-	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|97aa|up_4|NZ_CP021257.1_203685_203976_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|68aa|up_3|NZ_CP021257.1_203972_204176_-	pfam02599, CsrA, Global regulator protein family	NA|121aa|up_2|NZ_CP021257.1_204188_204551_-	NA	NA|290aa|up_1|NZ_CP021257.1_204516_205386_-	NA	NA|222aa|up_0|NZ_CP021257.1_205549_206215_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	cas4|198aa|down_0|NZ_CP021257.1_207755_208349_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|100aa|down_1|NZ_CP021257.1_208329_208629_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_2|NZ_CP021257.1_208635_209628_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas9|1373aa|down_3|NZ_CP021257.1_209624_213743_-	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|73aa|down_4|NZ_CP021257.1_213914_214133_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|111aa|down_5|NZ_CP021257.1_214593_214926_+	NA	NA|317aa|down_6|NZ_CP021257.1_214915_215866_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|114aa|down_7|NZ_CP021257.1_216098_216440_-	NA	NA|505aa|down_8|NZ_CP021257.1_216486_218001_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|down_9|NZ_CP021257.1_218012_218759_+	pfam01695, IstB_IS21, IstB-like ATP binding protein
GCF_003003865.1_ASM300386v1	NZ_CP021257	Legionella pneumophila subsp. fraseri strain Lansing 3 chromosome, complete genome	2	628265-628437	2	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	Orphan	AAATTACTGTTATGGCGGTAAATTTACTCGA	31	0	0	NA	NA	NA	2	2	Orphan	cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	NA|485aa|up_9|NZ_CP021257.1_618820_620275_-,NA|301aa|up_8|NZ_CP021257.1_620436_621339_+,NA|119aa|up_6|NZ_CP021257.1_622892_623249_-,NA|388aa|up_3|NZ_CP021257.1_625318_626482_-,NA|158aa|down_1|NZ_CP021257.1_629790_630264_-	NA|485aa|up_9|NZ_CP021257.1_618820_620275_-	NA	NA|301aa|up_8|NZ_CP021257.1_620436_621339_+	NA	NA|214aa|up_7|NZ_CP021257.1_621882_622524_+	pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase	NA|119aa|up_6|NZ_CP021257.1_622892_623249_-	NA	NA|56aa|up_5|NZ_CP021257.1_623847_624015_+	pfam11752, DUF3309, Protein of unknown function (DUF3309)	NA|396aa|up_4|NZ_CP021257.1_624139_625327_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|388aa|up_3|NZ_CP021257.1_625318_626482_-	NA	NA|313aa|up_2|NZ_CP021257.1_626775_627714_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|103aa|up_1|NZ_CP021257.1_627710_628019_-	TIGR03071, couple_hipA, HipA N-terminal domain	NA|76aa|up_0|NZ_CP021257.1_628015_628243_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|306aa|down_0|NZ_CP021257.1_628683_629601_-	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|158aa|down_1|NZ_CP021257.1_629790_630264_-	NA	NA|83aa|down_2|NZ_CP021257.1_630570_630819_+	PRK07206, PRK07206, hypothetical protein; Provisional	NA|104aa|down_3|NZ_CP021257.1_630834_631146_+	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain	NA|249aa|down_4|NZ_CP021257.1_632036_632783_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|505aa|down_5|NZ_CP021257.1_632794_634309_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|down_6|NZ_CP021257.1_635357_636263_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|119aa|down_7|NZ_CP021257.1_636302_636659_+	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|407aa|down_8|NZ_CP021257.1_636693_637914_-	cd17793, HipA, type II toxin-antitoxin sytem toxin HipA and similar proteins	NA|76aa|down_9|NZ_CP021257.1_637900_638128_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family
GCF_003003865.1_ASM300386v1	NZ_CP021257	Legionella pneumophila subsp. fraseri strain Lansing 3 chromosome, complete genome	3	664204-664309	3	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	Orphan	GAGTGCCCCCGTAATTGGGAAAGA	24	0	0	NA	NA	NA	1	1	Orphan	cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	NA|151aa|up_8|NZ_CP021257.1_652353_652806_+,NA|85aa|up_2|NZ_CP021257.1_658845_659100_+,NA|223aa|down_7|NZ_CP021257.1_670561_671230_+,NA|367aa|down_8|NZ_CP021257.1_671262_672363_+,NA|68aa|down_9|NZ_CP021257.1_672511_672715_+	NA|505aa|up_9|NZ_CP021257.1_650420_651935_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|151aa|up_8|NZ_CP021257.1_652353_652806_+	NA	NA|75aa|up_7|NZ_CP021257.1_652810_653035_-	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|273aa|up_6|NZ_CP021257.1_653105_653924_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|327aa|up_5|NZ_CP021257.1_653892_654873_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|92aa|up_4|NZ_CP021257.1_655493_655769_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|584aa|up_3|NZ_CP021257.1_655835_657587_+	pfam06048, DUF927, Domain of unknown function (DUF927)	NA|85aa|up_2|NZ_CP021257.1_658845_659100_+	NA	NA|614aa|up_1|NZ_CP021257.1_660983_662825_-	pfam13175, AAA_15, AAA ATPase domain	NA|392aa|up_0|NZ_CP021257.1_663022_664198_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|203aa|down_0|NZ_CP021257.1_664710_665319_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|290aa|down_1|NZ_CP021257.1_665315_666185_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|146aa|down_2|NZ_CP021257.1_666226_666664_-	PRK13895, PRK13895, conjugal transfer protein TraM; Provisional	NA|242aa|down_3|NZ_CP021257.1_666663_667389_-	PRK13886, PRK13886, conjugal transfer protein TraL; Provisional	NA|115aa|down_4|NZ_CP021257.1_667388_667733_-	pfam17273, DUF5338, Family of unknown function (DUF5338)	NA|118aa|down_5|NZ_CP021257.1_668128_668482_+	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ	NA|533aa|down_6|NZ_CP021257.1_668478_670077_+	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional	NA|223aa|down_7|NZ_CP021257.1_670561_671230_+	NA	NA|367aa|down_8|NZ_CP021257.1_671262_672363_+	NA	NA|68aa|down_9|NZ_CP021257.1_672511_672715_+	NA
GCF_003003865.1_ASM300386v1	NZ_CP021257	Legionella pneumophila subsp. fraseri strain Lansing 3 chromosome, complete genome	4	1633154-1633357	4	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	Orphan	CTCATAAAGGTCATTACATCTCAAATCAAG	30	0	0	NA	NA	NA	2	2	Orphan	cas4,cas2,cas1,cas9,RT,WYL,cas3,PD-DExK,DinG,DEDDh,csa3	NA|327aa|up_3|NZ_CP021257.1_1628389_1629370_+,NA|475aa|down_7|NZ_CP021257.1_1641572_1642997_-	NA|487aa|up_9|NZ_CP021257.1_1621234_1622695_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_8|NZ_CP021257.1_1622687_1624469_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|319aa|up_7|NZ_CP021257.1_1624472_1625429_+	pfam04229, GrpB, GrpB protein	NA|176aa|up_6|NZ_CP021257.1_1625425_1625953_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|250aa|up_5|NZ_CP021257.1_1626018_1626768_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|316aa|up_4|NZ_CP021257.1_1627091_1628039_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|327aa|up_3|NZ_CP021257.1_1628389_1629370_+	NA	NA|142aa|up_2|NZ_CP021257.1_1629659_1630085_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|357aa|up_1|NZ_CP021257.1_1630268_1631339_+	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional	NA|418aa|up_0|NZ_CP021257.1_1631347_1632601_+	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional	NA|249aa|down_0|NZ_CP021257.1_1633480_1634227_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|505aa|down_1|NZ_CP021257.1_1634238_1635753_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|173aa|down_2|NZ_CP021257.1_1635951_1636470_-	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	NA|772aa|down_3|NZ_CP021257.1_1637029_1639345_-	COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production and conversion]	NA|219aa|down_4|NZ_CP021257.1_1639565_1640222_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|125aa|down_5|NZ_CP021257.1_1640408_1640783_+	pfam09722, DUF2384, Protein of unknown function (DUF2384)	NA|226aa|down_6|NZ_CP021257.1_1640784_1641462_+	pfam08808, RES, RES domain	NA|475aa|down_7|NZ_CP021257.1_1641572_1642997_-	NA	NA|355aa|down_8|NZ_CP021257.1_1643821_1644886_+	pfam18493, DUF5617, Domain of unknown function (DUF5617)	NA|440aa|down_9|NZ_CP021257.1_1645049_1646369_+	PRK08170, PRK08170, acetyl-CoA C-acetyltransferase
