assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003003535.1_ASM300353v1	NZ_CP021260	Legionella pneumophila strain NY24 (D-7706) chromosome, complete genome	1	189550-190452	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas9	cas4,cas2,cas1,cas9,cas3,DEDDh,DinG,WYL,csa3	Type II-C,Type II-B,Type II-A	GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG	37,37,37	0	0	NA	NA	NA:NA:NA	12,12,11	12	TypeII-C,TypeII-B,TypeII-A	cas4,cas2,cas1,cas9,cas3,DEDDh,DinG,WYL,csa3	NA|132aa|up_9|NZ_CP021260.1_182653_183049_-,NA|49aa|up_8|NZ_CP021260.1_183045_183192_-,NA|121aa|up_2|NZ_CP021260.1_187174_187537_-,NA|290aa|up_1|NZ_CP021260.1_187502_188372_-,NA|111aa|down_5|NZ_CP021260.1_197505_197838_+,NA|175aa|down_7|NZ_CP021260.1_199033_199558_+,NA|69aa|down_9|NZ_CP021260.1_200723_200930_-	NA|132aa|up_9|NZ_CP021260.1_182653_183049_-	NA	NA|49aa|up_8|NZ_CP021260.1_183045_183192_-	NA	NA|237aa|up_7|NZ_CP021260.1_183206_183917_-	cd14262, VirB5_like, VirB5 protein family	NA|827aa|up_6|NZ_CP021260.1_183913_186394_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|94aa|up_5|NZ_CP021260.1_186380_186662_-	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|97aa|up_4|NZ_CP021260.1_186671_186962_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|68aa|up_3|NZ_CP021260.1_186958_187162_-	pfam02599, CsrA, Global regulator protein family	NA|121aa|up_2|NZ_CP021260.1_187174_187537_-	NA	NA|290aa|up_1|NZ_CP021260.1_187502_188372_-	NA	NA|222aa|up_0|NZ_CP021260.1_188535_189201_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	cas4|198aa|down_0|NZ_CP021260.1_190667_191261_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|100aa|down_1|NZ_CP021260.1_191241_191541_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_2|NZ_CP021260.1_191547_192540_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas9|1373aa|down_3|NZ_CP021260.1_192536_196655_-	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|73aa|down_4|NZ_CP021260.1_196826_197045_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|111aa|down_5|NZ_CP021260.1_197505_197838_+	NA	NA|317aa|down_6|NZ_CP021260.1_197827_198778_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|175aa|down_7|NZ_CP021260.1_199033_199558_+	NA	NA|398aa|down_8|NZ_CP021260.1_199581_200775_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|69aa|down_9|NZ_CP021260.1_200723_200930_-	NA
GCF_003003535.1_ASM300353v1	NZ_CP021260	Legionella pneumophila strain NY24 (D-7706) chromosome, complete genome	2	224773-225675	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,cas1,cas9	cas4,cas2,cas1,cas9,cas3,DEDDh,DinG,WYL,csa3	Type II-C,Type II-B,Type II-A	GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG,GTTTCAGTGGTTGGATTTTTAGATGAGGGATTATTGG	37,37,37	0	0	NA	NA	NA:NA:NA	12,12,11	12	TypeII-C,TypeII-B,TypeII-A	cas4,cas2,cas1,cas9,cas3,DEDDh,DinG,WYL,csa3	NA|132aa|up_9|NZ_CP021260.1_217876_218272_-,NA|49aa|up_8|NZ_CP021260.1_218268_218415_-,NA|121aa|up_2|NZ_CP021260.1_222397_222760_-,NA|290aa|up_1|NZ_CP021260.1_222725_223595_-,NA|111aa|down_5|NZ_CP021260.1_232728_233061_+,NA|95aa|down_9|NZ_CP021260.1_236570_236855_-	NA|132aa|up_9|NZ_CP021260.1_217876_218272_-	NA	NA|49aa|up_8|NZ_CP021260.1_218268_218415_-	NA	NA|237aa|up_7|NZ_CP021260.1_218429_219140_-	cd14262, VirB5_like, VirB5 protein family	NA|827aa|up_6|NZ_CP021260.1_219136_221617_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|94aa|up_5|NZ_CP021260.1_221603_221885_-	pfam05101, VirB3, Type IV secretory pathway, VirB3-like protein	NA|97aa|up_4|NZ_CP021260.1_221894_222185_-	pfam04956, TrbC, TrbC/VIRB2 family	NA|68aa|up_3|NZ_CP021260.1_222181_222385_-	pfam02599, CsrA, Global regulator protein family	NA|121aa|up_2|NZ_CP021260.1_222397_222760_-	NA	NA|290aa|up_1|NZ_CP021260.1_222725_223595_-	NA	NA|222aa|up_0|NZ_CP021260.1_223758_224424_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	cas4|198aa|down_0|NZ_CP021260.1_225890_226484_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|100aa|down_1|NZ_CP021260.1_226464_226764_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_2|NZ_CP021260.1_226770_227763_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas9|1373aa|down_3|NZ_CP021260.1_227759_231878_-	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|73aa|down_4|NZ_CP021260.1_232049_232268_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|111aa|down_5|NZ_CP021260.1_232728_233061_+	NA	NA|317aa|down_6|NZ_CP021260.1_233050_234001_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|392aa|down_7|NZ_CP021260.1_234265_235441_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|320aa|down_8|NZ_CP021260.1_235554_236514_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|95aa|down_9|NZ_CP021260.1_236570_236855_-	NA
GCF_003003535.1_ASM300353v1	NZ_CP021260	Legionella pneumophila strain NY24 (D-7706) chromosome, complete genome	3	3212630-3212732	3	CRISPRCasFinder	no		cas4,cas2,cas1,cas9,cas3,DEDDh,DinG,WYL,csa3	Orphan	CTGAGATAAAAAAAGAGTTTATAGACAACAAACTAG	36	0	0	NA	NA	NA	1	1	Orphan	cas4,cas2,cas1,cas9,cas3,DEDDh,DinG,WYL,csa3	NA|236aa|up_9|NZ_CP021260.1_3197839_3198547_+,NA|287aa|up_7|NZ_CP021260.1_3200380_3201241_+,NA|152aa|up_4|NZ_CP021260.1_3205284_3205740_-,NA|152aa|up_3|NZ_CP021260.1_3205852_3206308_+,NA|547aa|up_1|NZ_CP021260.1_3207717_3209358_-,NA	NA|236aa|up_9|NZ_CP021260.1_3197839_3198547_+	NA	NA|616aa|up_8|NZ_CP021260.1_3198533_3200381_+	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]	NA|287aa|up_7|NZ_CP021260.1_3200380_3201241_+	NA	NA|239aa|up_6|NZ_CP021260.1_3201362_3202079_-	pfam01738, DLH, Dienelactone hydrolase family	NA|1034aa|up_5|NZ_CP021260.1_3202186_3205288_-	TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein DotA/TraY	NA|152aa|up_4|NZ_CP021260.1_3205284_3205740_-	NA	NA|152aa|up_3|NZ_CP021260.1_3205852_3206308_+	NA	NA|468aa|up_2|NZ_CP021260.1_3206307_3207711_+	cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain	NA|547aa|up_1|NZ_CP021260.1_3207717_3209358_-	NA	NA|848aa|up_0|NZ_CP021260.1_3209717_3212261_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|267aa|down_0|NZ_CP021260.1_3213169_3213970_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|286aa|down_1|NZ_CP021260.1_3214084_3214942_-	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|342aa|down_2|NZ_CP021260.1_3215042_3216068_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|65aa|down_3|NZ_CP021260.1_3216060_3216255_-	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|314aa|down_4|NZ_CP021260.1_3216277_3217219_-	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|577aa|down_5|NZ_CP021260.1_3217211_3218942_-	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|477aa|down_6|NZ_CP021260.1_3218932_3220363_-	PRK10431, PRK10431, N-acetylmuramoyl-l-alanine amidase II; Provisional	NA|161aa|down_7|NZ_CP021260.1_3220362_3220845_-	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|494aa|down_8|NZ_CP021260.1_3220973_3222455_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|132aa|down_9|NZ_CP021260.1_3222585_3222981_-	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional
