assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003003495.1_ASM300349v1	NZ_CP027540	Streptococcus pneumoniae strain D39V chromosome, complete genome	1	97129-97224	1	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG	Orphan	AATGTGTAAGATTTTTATATATAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG	NA|74aa|up_9|NZ_CP027540.1_87722_87944_+,NA	NA|74aa|up_9|NZ_CP027540.1_87722_87944_+	NA	NA|310aa|up_8|NZ_CP027540.1_88262_89192_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_7|NZ_CP027540.1_89205_90129_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|492aa|up_6|NZ_CP027540.1_90386_91862_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|329aa|up_5|NZ_CP027540.1_92133_93120_+	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|287aa|up_4|NZ_CP027540.1_93241_94102_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|355aa|up_3|NZ_CP027540.1_94173_95238_-	pfam10310, DUF5427, Family of unknown function (DUF5427)	NA|304aa|up_2|NZ_CP027540.1_95300_96212_-	pfam13349, DUF4097, Putative adhesin	NA|198aa|up_1|NZ_CP027540.1_96204_96798_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|109aa|up_0|NZ_CP027540.1_96784_97111_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|389aa|down_0|NZ_CP027540.1_97249_98416_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|386aa|down_1|NZ_CP027540.1_98473_99631_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|617aa|down_2|NZ_CP027540.1_99672_101523_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|211aa|down_3|NZ_CP027540.1_101918_102551_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|291aa|down_4|NZ_CP027540.1_102572_103445_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_5|NZ_CP027540.1_103453_104125_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|168aa|down_6|NZ_CP027540.1_104366_104870_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|98aa|down_7|NZ_CP027540.1_105652_105946_+	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972)	NA|703aa|down_8|NZ_CP027540.1_106000_108109_+	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein	NA|214aa|down_9|NZ_CP027540.1_108105_108747_+	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group
GCF_003003495.1_ASM300349v1	NZ_CP027540	Streptococcus pneumoniae strain D39V chromosome, complete genome	2	1388473-1388594	2	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG	Orphan	ACTTCTGGTGTCGGTACATTTGGTGTTGG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG	NA,NA|532aa|down_3|NZ_CP027540.1_1398796_1400392_-	NA|120aa|up_9|NZ_CP027540.1_1380501_1380861_-	PRK07252, PRK07252, S1 RNA-binding domain-containing protein	NA|467aa|up_8|NZ_CP027540.1_1380862_1382263_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|80aa|up_7|NZ_CP027540.1_1382557_1382797_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|157aa|up_6|NZ_CP027540.1_1382828_1383299_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|97aa|up_5|NZ_CP027540.1_1383310_1383601_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|449aa|up_4|NZ_CP027540.1_1383753_1385100_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|122aa|up_3|NZ_CP027540.1_1385115_1385481_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|396aa|up_2|NZ_CP027540.1_1385473_1386661_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|163aa|up_1|NZ_CP027540.1_1386657_1387146_-	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown]	NA|183aa|up_0|NZ_CP027540.1_1387466_1388015_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|495aa|down_0|NZ_CP027540.1_1396123_1397608_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|243aa|down_1|NZ_CP027540.1_1397658_1398387_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|55aa|down_2|NZ_CP027540.1_1398465_1398630_-	pfam13129, DUF3953, Protein of unknown function (DUF3953)	NA|532aa|down_3|NZ_CP027540.1_1398796_1400392_-	NA	NA|137aa|down_4|NZ_CP027540.1_1400403_1400814_-	PRK09218, PRK09218, peptide deformylase; Validated	NA|264aa|down_5|NZ_CP027540.1_1400929_1401721_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|899aa|down_6|NZ_CP027540.1_1401733_1404430_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|395aa|down_7|NZ_CP027540.1_1404733_1405918_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|624aa|down_8|NZ_CP027540.1_1406060_1407932_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|395aa|down_9|NZ_CP027540.1_1407928_1409113_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional
GCF_003003495.1_ASM300349v1	NZ_CP027540	Streptococcus pneumoniae strain D39V chromosome, complete genome	3	1698525-1698642	3	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG	Orphan	CAAAAAAGAAAGGACAAAATTTGTCCTTTCTCGAGCTTAGCTTTT	45	1	3	1698570-1698597|1698570-1698597|1698570-1698597	NZ_CP027540.1_40218-40191|NZ_CP027540.1_966395-966422|NZ_CP027540.1_1656867-1656894	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG	NA,NA	NA|499aa|up_9|NZ_CP027540.1_1683418_1684915_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|660aa|up_8|NZ_CP027540.1_1684981_1686961_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|398aa|up_7|NZ_CP027540.1_1687647_1688841_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|481aa|up_6|NZ_CP027540.1_1688978_1690421_-	TIGR03852, sucrose_gtfA, sucrose phosphorylase	NA|278aa|up_5|NZ_CP027540.1_1690778_1691612_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|289aa|up_4|NZ_CP027540.1_1691625_1692492_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|420aa|up_3|NZ_CP027540.1_1692505_1693765_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|721aa|up_2|NZ_CP027540.1_1693856_1696019_-	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|287aa|up_1|NZ_CP027540.1_1696126_1696987_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|312aa|up_0|NZ_CP027540.1_1696983_1697919_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|452aa|down_0|NZ_CP027540.1_1705551_1706907_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|259aa|down_1|NZ_CP027540.1_1706944_1707721_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|178aa|down_2|NZ_CP027540.1_1707809_1708343_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|107aa|down_3|NZ_CP027540.1_1708696_1709017_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|410aa|down_4|NZ_CP027540.1_1709062_1710292_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|541aa|down_5|NZ_CP027540.1_1710390_1712013_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_6|NZ_CP027540.1_1712028_1712313_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|132aa|down_7|NZ_CP027540.1_1712468_1712864_-	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|254aa|down_8|NZ_CP027540.1_1712941_1713703_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|209aa|down_9|NZ_CP027540.1_1713735_1714362_-	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain
