assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002996945.1_ASM299694v1	NZ_CP027534	Escherichia coli strain AR_0081 chromosome, complete genome	1	3231426-3231549	1	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	NA,NA|30aa|down_7|NZ_CP027534.1_3240445_3240535_+	NA|471aa|up_9|NZ_CP027534.1_3220101_3221514_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027534.1_3222070_3222280_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027534.1_3222735_3223362_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027534.1_3223382_3225485_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027534.1_3225488_3226136_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027534.1_3226199_3226868_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027534.1_3226864_3227650_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027534.1_3227653_3228466_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027534.1_3228477_3230082_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027534.1_3230984_3231290_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027534.1_3231863_3233120_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027534.1_3233160_3234534_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027534.1_3234748_3235390_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027534.1_3235429_3236578_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027534.1_3236868_3238080_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027534.1_3238192_3239125_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027534.1_3239121_3240147_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027534.1_3240445_3240535_+	NA	NA|390aa|down_8|NZ_CP027534.1_3240700_3241870_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027534.1_3242015_3242597_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002996945.1_ASM299694v1	NZ_CP027534	Escherichia coli strain AR_0081 chromosome, complete genome	2	3911263-3911354	2	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	NA|70aa|up_9|NZ_CP027534.1_3900513_3900723_-,NA	NA|70aa|up_9|NZ_CP027534.1_3900513_3900723_-	NA	NA|1321aa|up_8|NZ_CP027534.1_3900777_3904740_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027534.1_3904779_3905418_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027534.1_3905705_3906797_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027534.1_3906796_3907489_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027534.1_3907500_3907887_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027534.1_3907894_3908695_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027534.1_3908704_3909295_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027534.1_3909305_3909800_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027534.1_3909820_3911149_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027534.1_3911777_3912374_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027534.1_3912394_3912622_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027534.1_3912659_3913901_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP027534.1_3914435_3915356_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP027534.1_3915355_3915661_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP027534.1_3915915_3916515_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP027534.1_3916511_3919058_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP027534.1_3919057_3920230_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP027534.1_3920359_3921052_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP027534.1_3921024_3922053_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_002996945.1_ASM299694v1	NZ_CP027534	Escherichia coli strain AR_0081 chromosome, complete genome	3	4143278-4143360	3	CRISPRCasFinder	no		DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	NA,NA	NA|431aa|up_9|NZ_CP027534.1_4128275_4129568_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP027534.1_4129658_4131002_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP027534.1_4131012_4131624_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP027534.1_4131782_4135889_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP027534.1_4136023_4136518_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP027534.1_4137061_4138027_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP027534.1_4138149_4139916_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP027534.1_4139916_4141638_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP027534.1_4141679_4142384_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP027534.1_4142668_4142887_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP027534.1_4143571_4145848_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP027534.1_4145878_4146199_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP027534.1_4146521_4146746_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP027534.1_4146818_4148765_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP027534.1_4148761_4149877_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP027534.1_4150027_4150984_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP027534.1_4150980_4152639_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP027534.1_4153063_4153759_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP027534.1_4154173_4155073_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP027534.1_4155216_4156869_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002996945.1_ASM299694v1	NZ_CP027534	Escherichia coli strain AR_0081 chromosome, complete genome	4	4995498-4995630	1	PILER-CR	no		DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,c2c9_V-U4,csa3,RT,DinG	NA,NA|73aa|down_7|NZ_CP027534.1_5003577_5003796_+	NA|95aa|up_9|NZ_CP027534.1_4986899_4987184_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP027534.1_4987186_4987420_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP027534.1_4987505_4987985_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP027534.1_4988176_4990039_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP027534.1_4990031_4990562_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP027534.1_4990669_4992001_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP027534.1_4992059_4992347_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP027534.1_4992343_4993630_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP027534.1_4993680_4994622_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP027534.1_4994636_4995407_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP027534.1_4995879_4997394_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP027534.1_4997424_4998567_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP027534.1_4998695_4999913_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP027534.1_4999985_5001539_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP027534.1_5001647_5002433_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP027534.1_5002438_5003029_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP027534.1_5003147_5003543_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP027534.1_5003577_5003796_+	NA	NA|1074aa|down_8|NZ_CP027534.1_5003803_5007025_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP027534.1_5007042_5008191_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
