assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002970895.1_ASM297089v1	NZ_CP027189	Klebsiella pneumoniae strain KPHS1249 chromosome, complete genome	1	2073948-2074042	1	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Orphan	GTGCAGGAGATTCACCAGGGGGTAGTGCA	29	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA|147aa|up_9|NZ_CP027189.1_2070076_2070517_-,NA|73aa|up_8|NZ_CP027189.1_2070513_2070732_-,NA|85aa|up_7|NZ_CP027189.1_2070703_2070958_-,NA|122aa|up_6|NZ_CP027189.1_2070950_2071316_-,NA|75aa|up_5|NZ_CP027189.1_2071316_2071541_-,NA|65aa|up_4|NZ_CP027189.1_2071711_2071906_-,NA|103aa|up_3|NZ_CP027189.1_2071895_2072204_-,NA|183aa|down_4|NZ_CP027189.1_2078132_2078681_+,NA|92aa|down_8|NZ_CP027189.1_2080224_2080500_+,NA|63aa|down_9|NZ_CP027189.1_2080450_2080639_+	NA|147aa|up_9|NZ_CP027189.1_2070076_2070517_-	NA	NA|73aa|up_8|NZ_CP027189.1_2070513_2070732_-	NA	NA|85aa|up_7|NZ_CP027189.1_2070703_2070958_-	NA	NA|122aa|up_6|NZ_CP027189.1_2070950_2071316_-	NA	NA|75aa|up_5|NZ_CP027189.1_2071316_2071541_-	NA	NA|65aa|up_4|NZ_CP027189.1_2071711_2071906_-	NA	NA|103aa|up_3|NZ_CP027189.1_2071895_2072204_-	NA	NA|236aa|up_2|NZ_CP027189.1_2072362_2073070_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|76aa|up_1|NZ_CP027189.1_2073194_2073422_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|63aa|up_0|NZ_CP027189.1_2073497_2073686_+	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|293aa|down_0|NZ_CP027189.1_2074524_2075403_+	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|460aa|down_1|NZ_CP027189.1_2075399_2076779_+	TIGR00665, DnaB, replicative DNA helicase	NA|123aa|down_2|NZ_CP027189.1_2076765_2077134_+	pfam05866, RusA, Endodeoxyribonuclease RusA	NA|261aa|down_3|NZ_CP027189.1_2077130_2077913_+	pfam03589, Antiterm, Antitermination protein	NA|183aa|down_4|NZ_CP027189.1_2078132_2078681_+	NA	NA|131aa|down_5|NZ_CP027189.1_2078932_2079325_+	pfam16931, Phage_holin_8, Putative phage holin	NA|93aa|down_6|NZ_CP027189.1_2079314_2079593_+	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3	NA|210aa|down_7|NZ_CP027189.1_2079592_2080222_+	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|92aa|down_8|NZ_CP027189.1_2080224_2080500_+	NA	NA|63aa|down_9|NZ_CP027189.1_2080450_2080639_+	NA
GCF_002970895.1_ASM297089v1	NZ_CP027189	Klebsiella pneumoniae strain KPHS1249 chromosome, complete genome	2	3249040-3249375	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Type I-E	GTGTCTTCCCCACACACGTGGGGGTGTTTCTA,GTCTTCCCCACACACGTGGGGGTGTTTC,GTCTTCCCCACANNCGTGGGGGTGTTTC	32,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	2,5,5	5	TypeI-E	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA,NA	NA|131aa|up_9|NZ_CP027189.1_3235541_3235934_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NZ_CP027189.1_3235970_3237203_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NZ_CP027189.1_3237768_3238203_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NZ_CP027189.1_3238319_3239519_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_5|NZ_CP027189.1_3239814_3240972_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NZ_CP027189.1_3241014_3243165_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_CP027189.1_3243412_3244492_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_CP027189.1_3244794_3245883_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP027189.1_3245956_3247726_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP027189.1_3247718_3248789_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP027189.1_3249787_3252403_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP027189.1_3252406_3253930_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP027189.1_3253941_3254508_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP027189.1_3254500_3255148_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP027189.1_3255177_3256212_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_5|NZ_CP027189.1_3256245_3256941_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP027189.1_3256940_3257816_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP027189.1_3257793_3258081_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP027189.1_3259980_3261096_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_9|NZ_CP027189.1_3261106_3261790_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_002970895.1_ASM297089v1	NZ_CP027189	Klebsiella pneumoniae strain KPHS1249 chromosome, complete genome	3	3258129-3259742	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	26,26,26	26	TypeI-E	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA,NA	NA|590aa|up_9|NZ_CP027189.1_3245956_3247726_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP027189.1_3247718_3248789_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP027189.1_3249787_3252403_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP027189.1_3252406_3253930_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP027189.1_3253941_3254508_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP027189.1_3254500_3255148_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP027189.1_3255177_3256212_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_2|NZ_CP027189.1_3256245_3256941_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP027189.1_3256940_3257816_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP027189.1_3257793_3258081_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP027189.1_3259980_3261096_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|NZ_CP027189.1_3261106_3261790_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP027189.1_3261850_3262222_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|NZ_CP027189.1_3262726_3263479_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP027189.1_3263481_3265266_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP027189.1_3265279_3266617_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP027189.1_3266700_3267324_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP027189.1_3267320_3267980_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP027189.1_3268029_3268767_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP027189.1_3268763_3268994_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_002970895.1_ASM297089v1	NZ_CP027189	Klebsiella pneumoniae strain KPHS1249 chromosome, complete genome	4	5242845-5242984	4	CRISPRCasFinder	no	DEDDh	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Unclear	TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG	50	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA,NA	NA|428aa|up_9|NZ_CP027189.1_5232593_5233877_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP027189.1_5234012_5235413_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP027189.1_5235458_5236151_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP027189.1_5236236_5236635_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP027189.1_5236692_5237937_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP027189.1_5238042_5238501_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP027189.1_5238758_5240216_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP027189.1_5240258_5240711_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP027189.1_5240713_5241769_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP027189.1_5241928_5242789_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP027189.1_5243011_5243227_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP027189.1_5243229_5244453_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP027189.1_5244465_5245062_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP027189.1_5245068_5245707_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP027189.1_5245699_5246494_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP027189.1_5246486_5247725_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP027189.1_5247728_5249072_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP027189.1_5249483_5250224_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP027189.1_5250194_5250962_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP027189.1_5251036_5251618_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
