The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020025	Escherichia coli strain WB61 chromosome, complete genome	4687045	262961	351576	4687045	plate,tail,transposase,tRNA	Burkholderia_phage(21.43%)	77	NA	NA
WP_000187016.1|262961_264062_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_016235454.1|264430_266275_+	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	32.6	5.5e-10
WP_000201825.1|266219_267077_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000236980.1|272233_272677_-	acetyltransferase	NA	NA	NA	NA	NA
WP_001122786.1|272833_273763_+	homoserine O-succinyltransferase	NA	NA	NA	NA	NA
WP_022646399.1|274031_275633_+	malate synthase A	NA	NA	NA	NA	NA
WP_000857856.1|275662_276967_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_022646400.1|277052_278777_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA	NA
WP_000226403.1|278793_279618_-	glyoxylate bypass operon transcriptional repressor IclR	NA	NA	NA	NA	NA
WP_001572176.1|279817_283501_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	90.2	1.3e-26
WP_000956822.1|283720_285352_+	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_022646401.1|285441_286131_-	dipeptidase PepE	NA	NA	NA	NA	NA
WP_000610344.1|286253_287066_-	shikimate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000858564.1|287058_288288_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_000437897.1|288339_289164_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_000406332.1|289174_289972_-	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
WP_001027853.1|290037_290532_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000245629.1|290531_290939_-	PTS sorbose transporter subunit IIA	NA	NA	NA	NA	NA
WP_001195407.1|290948_291755_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000431660.1|291824_292772_-	sugar-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_022646403.1|293119_293992_+	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA	NA
WP_001207638.1|293992_294265_-	DUF3811 domain-containing protein	NA	NA	NA	NA	NA
WP_022646404.1|294793_295921_+	slipin family protein	NA	NA	NA	NA	NA
WP_022646405.1|295926_296718_+	nucleotidyltransferase domain-containing protein	NA	A0A2D1GQQ2	Pseudomonas_phage	45.1	2.0e-46
WP_022646406.1|296731_297187_-	hypothetical protein	NA	F6MIM0	Haemophilus_phage	42.7	6.6e-26
WP_022646407.1|297183_297891_-	DUF4376 domain-containing protein	NA	A0A0E3JQ06	Enterobacteria_phage	42.4	5.3e-14
WP_105178362.1|297887_299501_-|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	33.3	1.9e-59
WP_022646409.1|299503_300220_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	37.2	3.1e-22
WP_022646410.1|300212_301328_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	51.7	2.0e-100
WP_022646411.1|301318_301678_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	1.1e-34
WP_000679403.1|301776_302478_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	36.3	6.4e-12
WP_022646412.1|302487_303528_-	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.1	2.0e-73
WP_001269711.1|303515_303725_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	60.3	1.3e-16
WP_022646413.1|303724_304678_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	50.8	3.3e-35
WP_022646414.1|304677_307053_-	hypothetical protein	NA	A4JWL0	Burkholderia_virus	26.0	1.0e-56
WP_015674804.1|307154_307283_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_022646415.1|307242_307560_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907502.1|307610_308135_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.0	9.5e-69
WP_022646416.1|308134_309559_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.2	7.0e-191
WP_000875310.1|309548_309746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022646417.1|309742_310198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777272.1|310342_310657_-	membrane protein	NA	Q5ZQY8	Pseudomonas_phage	43.2	9.2e-19
WP_000266448.1|310669_311275_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	57.1	3.3e-57
WP_022646418.1|311277_311565_-	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.6	3.9e-16
WP_000619864.1|312102_312450_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	49.0	2.2e-21
WP_022646419.1|312504_313854_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000608644.1|314126_315389_-|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
WP_022646420.1|316330_317980_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000757333.1|318334_318577_+	polysaccharide production threonine-rich protein	NA	NA	NA	NA	NA
WP_001296632.1|318690_319329_+	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_022646421.1|319325_320063_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_077516252.1|320062_322159_+	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_001295279.1|322205_322484_-	periplasmic protein	NA	NA	NA	NA	NA
WP_047625266.1|322697_323108_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_001252058.1|323201_324092_-	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_001361466.1|324106_325651_-	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_000695387.1|325804_326995_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000179165.1|327359_328475_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	31.7	4.3e-18
WP_105178363.1|328546_329875_+	maltoporin LamB	NA	NA	NA	NA	NA
WP_000783444.1|330038_330959_+	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_022646424.1|331186_332767_+	SopA family protein	NA	NA	NA	NA	NA
WP_001308201.1|332989_333487_+	chorismate lyase	NA	NA	NA	NA	NA
WP_000455227.1|333499_334372_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000017354.1|334526_336950_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000002907.1|337120_337489_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000646078.1|337598_338207_+	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_001361471.1|338279_339605_+	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_001296638.1|339720_339930_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000416263.1|339971_340487_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_022646425.1|340804_341809_+	DUF2713 family protein	NA	NA	NA	NA	NA
WP_021520058.1|343611_344355_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	95.5	4.0e-145
WP_050496112.1|344291_344894_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	83.7	3.4e-86
WP_024186507.1|348019_349183_+	hypothetical protein	NA	A0A0E3M0V5	Enterobacteria_phage	42.7	1.3e-73
WP_000654156.1|349179_349461_+	hypothetical protein	NA	A0A1X7QHA1	Escherichia_phage	50.0	4.1e-18
WP_059332724.1|349470_350175_+	hypothetical protein	NA	A0A1X7QGH6	Escherichia_phage	61.7	1.2e-58
WP_105178364.1|350185_350494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001298868.1|350538_351576_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP020025	Escherichia coli strain WB61 chromosome, complete genome	4687045	437822	496058	4687045	transposase,tail,protease,tRNA	Burkholderia_phage(17.65%)	53	NA	NA
WP_000003800.1|437822_439340_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	38.0	1.2e-87
WP_022646457.1|439576_441034_-	dipeptide/tripeptide permease DtpC	NA	A0A0P0IY73	Acinetobacter_phage	29.6	4.0e-48
WP_001296667.1|441092_443240_-	lysine decarboxylase CadA	NA	NA	NA	NA	NA
WP_000092909.1|443319_444654_-	cadaverine/lysine antiporter	NA	NA	NA	NA	NA
WP_015674804.1|446504_446633_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_022646415.1|446592_446910_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907502.1|446960_447485_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.0	9.5e-69
WP_022646416.1|447484_448909_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.2	7.0e-191
WP_000875310.1|448898_449096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022646417.1|449092_449548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777272.1|449692_450007_-	membrane protein	NA	Q5ZQY8	Pseudomonas_phage	43.2	9.2e-19
WP_105178368.1|450019_450559_-	lytic transglycosylase domain-containing protein	NA	J9SHG5	Pseudomonas_phage	56.2	2.3e-54
WP_105178369.1|450563_450851_-	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000619864.1|451339_451687_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	49.0	2.2e-21
WP_000608644.1|453311_454574_-|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
WP_001188520.1|456470_457046_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000068927.1|457082_458780_-	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_000883400.1|458755_459094_-	divalent cation tolerance protein CutA	NA	NA	NA	NA	NA
WP_000961959.1|459209_460511_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA	NA
WP_000069437.1|460628_462065_-	aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_001267445.1|462401_462878_+	membrane protein FxsA	NA	NA	NA	NA	NA
WP_000015841.1|462893_464150_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA	NA
WP_001026276.1|464425_464719_+	co-chaperone GroES	NA	K4F9I2	Cronobacter_phage	45.4	9.2e-13
WP_000729117.1|464762_466409_+	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.9	5.3e-190
WP_000558209.1|466543_466897_+	DUF4156 domain-containing protein	NA	NA	NA	NA	NA
WP_022646461.1|466946_467816_-	YjeJ family protein	NA	NA	NA	NA	NA
WP_077516266.1|468050_469079_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA	NA
WP_000257278.1|469120_469687_+	elongation factor P	NA	NA	NA	NA	NA
WP_000977754.1|469738_469864_+	lipoprotein antitoxin entericidin A	NA	NA	NA	NA	NA
WP_000239596.1|469974_470121_+	lipoprotein toxin entericidin B	NA	NA	NA	NA	NA
WP_000118482.1|470296_470614_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA	NA
WP_105178371.1|470610_471144_-	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	53.1	2.2e-44
WP_105178372.1|471237_472371_-	CMY-2 family class C beta-lactamase	NA	NA	NA	NA	NA
WP_000609663.1|472433_472793_-	fumarate reductase subunit FrdD	NA	NA	NA	NA	NA
WP_000208757.1|472803_473199_-	fumarate reductase subunit FrdC	NA	NA	NA	NA	NA
WP_000829498.1|473209_473944_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA	NA
WP_022646463.1|473936_475745_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA	NA
WP_000004771.1|476069_477047_+	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9KZX5	Tupanvirus	28.2	6.8e-28
WP_023908951.1|477265_478768_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA	NA
WP_001236797.1|478918_482242_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA	NA
WP_000934920.1|482263_483232_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_000041980.1|483328_484381_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA	NA
WP_001295188.1|484475_485021_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.4	2.2e-28
WP_010723271.1|485652_485706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_022646465.1|485688_486828_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_023908950.1|486826_488374_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_000981977.1|488345_488807_+|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	tRNA	NA	NA	NA	NA
WP_000990261.1|488825_490163_+	N-acetylmuramoyl-L-alanine amidase AmiB	NA	A0A067ZJB6	Vibrio_phage	31.0	8.8e-18
WP_077516270.1|490172_492020_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.3	3.4e-60
WP_001280339.1|492012_492963_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_001051883.1|493048_493357_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000460357.1|493432_494713_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000312479.1|494798_496058_+|protease	FtsH protease activity modulator HflK	protease	A0A1L2CVV0	Pectobacterium_phage	25.5	3.6e-05
>prophage 3
NZ_CP020025	Escherichia coli strain WB61 chromosome, complete genome	4687045	700569	709878	4687045		Cyanophage(16.67%)	10	NA	NA
WP_000130187.1|700569_701523_+	transaldolase	NA	A0A127KNC6	Cyanophage	31.5	1.7e-10
WP_001094685.1|701637_702225_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_000528541.1|702259_702826_-	acetate uptake transporter	NA	NA	NA	NA	NA
WP_001102376.1|702974_703688_-	acidic protein MsyB	NA	NA	NA	NA	NA
WP_000843577.1|703713_704118_-	DUF2541 family protein	NA	NA	NA	NA	NA
WP_000516135.1|704493_706410_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	51.1	6.9e-149
WP_001118464.1|706498_707629_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	34.6	4.6e-28
WP_000729631.1|707732_707828_-	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	80.6	1.6e-06
WP_001181672.1|707972_708182_-	type I toxin-antitoxin system toxin MokC	NA	A0A0P0ZAX5	Stx2-converting_phage	72.5	5.2e-18
WP_000681360.1|708711_709878_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	50.3	7.5e-90
>prophage 4
NZ_CP020025	Escherichia coli strain WB61 chromosome, complete genome	4687045	2014621	2024764	4687045	holin	Escherichia_phage(43.75%)	16	NA	NA
WP_053289980.1|2014621_2014777_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	55.3	1.0e-07
WP_000948459.1|2015096_2015573_-	DNA-binding transcriptional repressor RacR	NA	A0A2D1GNH0	Pseudomonas_phage	53.4	2.2e-11
WP_000712069.1|2015696_2015993_+	toxin YdaS	NA	A0A0R6PH31	Moraxella_phage	44.9	9.6e-10
WP_105178393.1|2016015_2016276_+	hypothetical protein	NA	A0A0U2RXZ9	Escherichia_phage	96.8	7.4e-30
WP_001151150.1|2016291_2016714_+	DUF977 family protein	NA	A0A0U2QQN3	Escherichia_phage	90.6	2.6e-64
WP_000403785.1|2016771_2017128_+	hypothetical protein	NA	A0A2R2Z307	Escherichia_phage	99.2	1.8e-58
WP_001224662.1|2017221_2017404_+	hypothetical protein	NA	A0A2R2Z308	Escherichia_phage	100.0	1.4e-27
WP_000753060.1|2017396_2017573_+	hypothetical protein	NA	A0A2R2X2A8	Escherichia_phage	94.8	6.7e-27
WP_000813254.1|2019562_2019718_+	type I toxin-antitoxin system toxin HokD	NA	A0A0U2QV81	Escherichia_phage	96.1	1.5e-17
WP_023141427.1|2019885_2020158_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	50.8	4.2e-12
WP_053289977.1|2020159_2021209_+	DUF968 domain-containing protein	NA	U5P0K4	Shigella_phage	53.4	1.4e-106
WP_053289978.1|2021221_2021596_+	RusA family crossover junction endodeoxyribonuclease	NA	V5URS4	Shigella_phage	64.5	1.7e-35
WP_105178463.1|2021694_2021883_+|holin	class II holin family protein	holin	A5LH82	Enterobacteria_phage	80.0	1.2e-18
WP_105178394.1|2021887_2022232_+	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	94.0	1.4e-36
WP_000992105.1|2022258_2022792_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	96.0	4.8e-100
WP_105178395.1|2023978_2024764_+	Ail/Lom family outer membrane beta-barrel protein	NA	A0A291AWV3	Escherichia_phage	86.9	9.5e-81
>prophage 5
NZ_CP020025	Escherichia coli strain WB61 chromosome, complete genome	4687045	2840022	2849464	4687045		Enterobacteria_phage(85.71%)	10	NA	NA
WP_077516314.1|2840022_2841159_+	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	98.0	1.7e-163
WP_077516316.1|2841155_2843156_+	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.1	0.0e+00
WP_001296231.1|2843280_2843742_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
WP_001295430.1|2843782_2844253_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_000598641.1|2844299_2845019_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001334139.1|2845015_2846701_-	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.5	9.5e-304
WP_077516318.1|2846922_2847654_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.0	2.8e-111
WP_001216963.1|2847713_2847821_+	protein YohO	NA	NA	NA	NA	NA
WP_024242011.1|2847801_2848533_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_077516320.1|2848537_2849464_-	glycine betaine ABC transporter ATP binding protein YehX	NA	F2Y1V5	Organic_Lake_phycodnavirus	26.8	5.7e-08
