The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	80573	92669	1901533	tRNA	Vibrio_phage(14.29%)	11	NA	NA
WP_005658393.1|80573_82697_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.8	1.6e-260
WP_005687536.1|82814_83675_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
WP_005687538.1|83835_85215_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	6.6e-53
WP_005652519.1|85317_85827_+	peptidyl-prolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	7.2e-13
WP_005687540.1|85881_86688_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_005687542.1|86731_87265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005658381.1|87323_87647_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.4	2.0e-16
WP_005658379.1|87766_88762_-	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.9	6.4e-66
WP_074032767.1|88774_89920_-	methionine biosynthesis PLP-dependent protein	NA	A0A141ZJM2	Faustovirus	26.8	1.1e-13
WP_005653598.1|90475_91312_+	ParA family protein	NA	NA	NA	NA	NA
WP_005687545.1|91313_92669_+	replicative DNA helicase	NA	O80281	Escherichia_phage	43.6	3.4e-94
>prophage 2
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	459484	525457	1901533	holin,terminase,portal,tRNA,protease,tail	Haemophilus_phage(12.5%)	78	NA	NA
WP_005686779.1|459484_460225_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_005659951.1|460309_460654_+	YggL family protein	NA	NA	NA	NA	NA
WP_005686780.1|460859_461390_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
WP_005686781.1|461382_461664_+	chaperone NapD	NA	NA	NA	NA	NA
WP_005686782.1|461700_464184_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA	NA
WP_032821617.1|464268_465078_+	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
WP_005686786.1|465077_465941_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA	NA
WP_005691774.1|465937_466390_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
WP_005649107.1|466404_467007_+	cytochrome c3 family protein	NA	NA	NA	NA	NA
WP_005656340.1|467166_467811_-	adenylate kinase	NA	NA	NA	NA	NA
WP_032821618.1|467895_469173_-	MFS transporter	NA	NA	NA	NA	NA
WP_005656342.1|469314_470331_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	48.9	4.2e-89
WP_105182796.1|470503_471484_-	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA	NA
WP_005686791.1|471908_472631_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.5	1.5e-27
WP_005686793.1|472627_473365_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	24.5	2.2e-10
WP_005686795.1|473387_474332_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005686797.1|474341_474989_+	thiaminase II	NA	NA	NA	NA	NA
WP_005686800.1|475082_475898_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005686803.1|475890_476739_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005686805.1|476742_477663_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.4	1.8e-17
WP_005656358.1|477662_478544_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005686807.1|478908_479787_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_032821620.1|480012_481185_+|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	tRNA	NA	NA	NA	NA
WP_005686810.1|481285_481825_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_005686812.1|481896_482808_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005686814.1|482816_483923_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_005686816.1|483932_485204_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SLE3	Klosneuvirus	26.2	9.8e-27
WP_005686818.1|485221_485836_+	YfgM family protein	NA	NA	NA	NA	NA
WP_005626949.1|485886_486081_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_005656373.1|486080_486422_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_005686821.1|486461_488321_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.5	8.0e-110
WP_005686823.1|488339_489026_-	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_005662651.1|489076_489601_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005649164.1|489613_489937_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
WP_005691745.1|489994_490411_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	2.0e-53
WP_005649169.1|490434_491649_-	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
WP_005654871.1|491715_492168_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_005654873.1|492220_492946_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_105182797.1|493594_494080_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	54.1	4.0e-45
WP_105182798.1|494072_494696_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	49.7	4.2e-31
WP_105182799.1|494770_495046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182800.1|495023_495332_+	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_042611837.1|497292_500943_-|tail	phage tail protein	tail	A0A0R6PIC9	Moraxella_phage	37.2	2.9e-140
WP_080291956.1|500946_501666_-|tail	tail assembly protein	tail	A0A1P8DTG7	Proteus_phage	40.2	6.1e-34
WP_105182801.1|501604_502312_-	C40 family peptidase	NA	A0A1B1IV85	uncultured_Mediterranean_phage	43.2	9.9e-53
WP_038440725.1|502313_502964_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	39.6	2.5e-34
WP_044365105.1|503683_504217_-	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_042603541.1|504278_504623_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	41.3	8.6e-18
WP_105182802.1|504623_507002_-	hypothetical protein	NA	H6WRV7	Salmonella_phage	31.9	1.8e-29
WP_105182803.1|506943_507249_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_005668576.1|507311_507695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668575.1|507700_508201_-|tail	tail fiber protein	tail	O64327	Escherichia_phage	56.1	7.5e-39
WP_005668573.1|508193_508598_-	hypothetical protein	NA	K7PHM6	Enterobacterial_phage	32.1	7.5e-13
WP_005668571.1|508594_509140_-	hypothetical protein	NA	K7PKQ5	Enterobacteria_phage	45.6	4.2e-27
WP_105182804.1|509139_509445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651203.1|509425_509749_-	DUF2190 family protein	NA	K7PJY3	Enterobacterial_phage	42.7	9.5e-11
WP_105182840.1|509827_511855_-|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	55.9	1.7e-198
WP_105182805.1|511805_513329_-|portal	phage portal protein	portal	S5MW34	Escherichia_phage	57.9	2.9e-158
WP_105182806.1|513332_513551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105182807.1|513547_515668_-|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	66.7	1.4e-272
WP_105182808.1|515670_516144_-	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	53.0	1.9e-39
WP_042600478.1|516420_516810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105182809.1|516851_517133_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	74.4	2.1e-30
WP_105182810.1|517044_517368_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	56.1	7.0e-22
WP_006995063.1|517360_517963_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	55.4	3.9e-58
WP_032826240.1|517928_518288_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_005651339.1|518527_519046_-	antitermination protein	NA	G8C7V7	Escherichia_phage	34.0	3.4e-18
WP_042599558.1|519046_519592_-	NinG recombination protein	NA	D0UIK8	Aggregatibacter_phage	71.9	8.1e-63
WP_105182811.1|519680_520100_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	83.3	3.1e-62
WP_146115314.1|520136_520358_-	hypothetical protein	NA	A0A0M3LPX7	Mannheimia_phage	59.7	1.3e-16
WP_105182813.1|520354_521278_-	N-6 DNA methylase	NA	A0A0M3LQ47	Mannheimia_phage	58.5	2.9e-97
WP_105182814.1|521274_521856_-	adenine methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	55.5	1.1e-49
WP_105182815.1|521852_522494_-	replication P	NA	A0A1I9KFB0	Aeromonas_phage	24.9	8.2e-06
WP_105182816.1|522478_523237_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.8	3.6e-61
WP_044365078.1|523233_523908_-	antirepressor	NA	D0UIL6	Aggregatibacter_phage	55.6	5.0e-62
WP_048942423.1|523956_524397_-	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	31.5	1.3e-13
WP_005688828.1|524451_524691_-	hypothetical protein	NA	A0A2I6PIE5	Escherichia_phage	49.2	7.0e-11
WP_105182817.1|524791_525457_+	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	44.2	8.7e-43
>prophage 3
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	529355	537407	1901533	integrase	Mannheimia_phage(28.57%)	13	528915:528929	540117:540131
528915:528929	attL	GGCAAAAGCGAAAGC	NA	NA	NA	NA
WP_105182819.1|529355_530276_+	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	71.9	2.8e-116
WP_105182820.1|530250_530901_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.2	1.0e-83
WP_105182821.1|530900_531335_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	36.8	7.5e-19
WP_105182822.1|531396_532419_+	hypothetical protein	NA	A0A0U4B0I3	Pseudomonas_phage	57.3	5.7e-33
WP_105182823.1|532543_533440_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.1	1.1e-56
WP_005661510.1|533436_533673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182824.1|533669_534029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182825.1|534036_535203_+	DNA (cytosine-5-)-methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	47.6	8.0e-92
WP_048942568.1|535199_535442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048942569.1|535438_535717_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_048942571.1|535720_536032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182841.1|536169_536484_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005641600.1|536381_537407_+|integrase	site-specific integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
540117:540131	attR	GCTTTCGCTTTTGCC	NA	NA	NA	NA
>prophage 4
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1341616	1350134	1901533		Planktothrix_phage(16.67%)	9	NA	NA
WP_005686497.1|1341616_1342600_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
WP_005686498.1|1342602_1343595_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	5.7e-14
WP_005686499.1|1343604_1344492_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_074032816.1|1344506_1345478_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_074032815.1|1345597_1347781_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	1.8e-116
WP_005647470.1|1347764_1347998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005686506.1|1348396_1349032_-	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_005647466.1|1349032_1349458_-	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	7.8e-21
WP_005686508.1|1349450_1350134_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
>prophage 5
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1538564	1545243	1901533		Sodalis_phage(16.67%)	10	NA	NA
WP_005688173.1|1538564_1538855_+	integration host factor subunit alpha	NA	Q2A099	Sodalis_phage	38.2	1.5e-10
WP_005688175.1|1538907_1539393_+	endopeptidase	NA	A0A2H5BM69	Streptomyces_phage	39.3	2.3e-16
WP_012054395.1|1539458_1540412_+	WYL domain-containing transcriptional regulator	NA	NA	NA	NA	NA
WP_005688179.1|1540470_1540926_+	hypothetical protein	NA	I6X231	Vibriophage	63.0	3.5e-43
WP_005671438.1|1540909_1541620_+	NAD-dependent deacylase	NA	R9TG77	Vibrio_phage	40.1	3.2e-27
WP_005688182.1|1541698_1542193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688183.1|1542206_1542923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688186.1|1542980_1543982_-	cytochrome c	NA	Q9JMN3	Wolbachia_phage	39.8	5.4e-20
WP_005688188.1|1544200_1544401_+	cell division protein FtsK	NA	NA	NA	NA	NA
WP_005688189.1|1544397_1545243_+	NAD-dependent deacetylase	NA	A0A1C3S788	Escherichia_phage	22.9	7.0e-05
>prophage 6
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1605392	1611586	1901533		Mannheimia_phage(57.14%)	13	NA	NA
WP_005687157.1|1605392_1605659_+	hypothetical protein	NA	A0A0N9STP5	Staphylococcus_phage	49.2	5.6e-09
WP_080281386.1|1605644_1606043_-	hypothetical protein	NA	A0A0M3LPU3	Mannheimia_phage	48.6	5.3e-11
WP_005650500.1|1606210_1606432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005650502.1|1606446_1606617_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_005687161.1|1607092_1607572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005687162.1|1607573_1608503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005687164.1|1608570_1609227_-	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	58.9	5.5e-66
WP_005687166.1|1609357_1609564_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	67.7	1.9e-17
WP_005687168.1|1609584_1609881_+	hypothetical protein	NA	Q7Y5W3	Haemophilus_phage	68.4	5.8e-31
WP_005687170.1|1609928_1610540_+	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	45.3	1.7e-40
WP_005653907.1|1610696_1610879_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_005653910.1|1610910_1611360_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_005687174.1|1611403_1611586_-	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	45.5	1.2e-05
>prophage 7
NZ_CP020013	Haemophilus influenzae strain 6P32H1 chromosome, complete genome	1901533	1620064	1632067	1901533	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
WP_105182836.1|1620064_1622929_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.5	2.3e-148
WP_005659477.1|1622962_1623235_-	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
WP_079995721.1|1623296_1624730_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
WP_005687194.1|1624767_1625769_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.6	4.4e-46
WP_005662273.1|1625821_1626208_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_005687195.1|1626256_1626844_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
WP_005687196.1|1626856_1628413_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
WP_080358718.1|1628514_1629402_-	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.7	2.9e-17
WP_005656740.1|1629543_1630041_-	non-heme ferritin	NA	NA	NA	NA	NA
WP_005650594.1|1630056_1630545_-	non-heme ferritin	NA	NA	NA	NA	NA
WP_074031221.1|1631062_1632067_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
