The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	80574	92670	1901558	tRNA	Vibrio_phage(14.29%)	11	NA	NA
WP_005658393.1|80574_82698_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.8	1.6e-260
WP_005687536.1|82815_83676_+	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
WP_005687538.1|83836_85216_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	6.6e-53
WP_005652519.1|85318_85828_+	peptidyl-prolyl cis-trans isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	7.2e-13
WP_005687540.1|85882_86689_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_005687542.1|86732_87266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005658381.1|87324_87648_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.4	2.0e-16
WP_005658379.1|87767_88763_-	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.9	6.4e-66
WP_074032767.1|88775_89921_-	methionine biosynthesis PLP-dependent protein	NA	A0A141ZJM2	Faustovirus	26.8	1.1e-13
WP_005653598.1|90476_91313_+	ParA family protein	NA	NA	NA	NA	NA
WP_005687545.1|91314_92670_+	replicative DNA helicase	NA	O80281	Escherichia_phage	43.6	3.4e-94
>prophage 2
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	459491	525468	1901558	protease,portal,terminase,holin,tRNA,tail	Haemophilus_phage(12.5%)	78	NA	NA
WP_005686779.1|459491_460232_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_005659951.1|460316_460661_+	YggL family protein	NA	NA	NA	NA	NA
WP_005686780.1|460866_461397_+	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
WP_005686781.1|461389_461671_+	chaperone NapD	NA	NA	NA	NA	NA
WP_005686782.1|461707_464191_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA	NA
WP_032821617.1|464275_465085_+	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
WP_005686786.1|465084_465948_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA	NA
WP_005691774.1|465944_466397_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
WP_005649107.1|466411_467014_+	cytochrome c3 family protein	NA	NA	NA	NA	NA
WP_005656340.1|467173_467818_-	adenylate kinase	NA	NA	NA	NA	NA
WP_032821618.1|467902_469180_-	MFS transporter	NA	NA	NA	NA	NA
WP_005656342.1|469321_470338_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	48.9	4.2e-89
WP_105211005.1|470510_471521_-	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA	NA
WP_005686791.1|471919_472642_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.5	1.5e-27
WP_005686793.1|472638_473376_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	24.5	2.2e-10
WP_005686795.1|473398_474343_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005686797.1|474352_475000_+	thiaminase II	NA	NA	NA	NA	NA
WP_005686800.1|475093_475909_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005686803.1|475901_476750_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005686805.1|476753_477674_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.4	1.8e-17
WP_005656358.1|477673_478555_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005686807.1|478919_479798_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_032821620.1|480023_481196_+|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	tRNA	NA	NA	NA	NA
WP_005686810.1|481296_481836_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA	NA
WP_005686812.1|481907_482819_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005686814.1|482827_483934_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_005686816.1|483943_485215_+|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SLE3	Klosneuvirus	26.2	9.8e-27
WP_005686818.1|485232_485847_+	YfgM family protein	NA	NA	NA	NA	NA
WP_005626949.1|485897_486092_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_005656373.1|486091_486433_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_005686821.1|486472_488332_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.5	8.0e-110
WP_005686823.1|488350_489037_-	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_005662651.1|489087_489612_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005649164.1|489624_489948_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
WP_005691745.1|490005_490422_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	2.0e-53
WP_005649169.1|490445_491660_-	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
WP_005654871.1|491726_492179_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_005654873.1|492231_492957_-|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_105182797.1|493605_494091_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	54.1	4.0e-45
WP_105182798.1|494083_494707_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	49.7	4.2e-31
WP_105182799.1|494781_495057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182800.1|495034_495343_+	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_042611837.1|497303_500954_-|tail	phage tail protein	tail	A0A0R6PIC9	Moraxella_phage	37.2	2.9e-140
WP_080291956.1|500957_501677_-|tail	tail assembly protein	tail	A0A1P8DTG7	Proteus_phage	40.2	6.1e-34
WP_105182801.1|501615_502323_-	C40 family peptidase	NA	A0A1B1IV85	uncultured_Mediterranean_phage	43.2	9.9e-53
WP_038440725.1|502324_502975_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	39.6	2.5e-34
WP_044365105.1|503694_504228_-	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_042603541.1|504289_504634_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	41.3	8.6e-18
WP_105182802.1|504634_507013_-	hypothetical protein	NA	H6WRV7	Salmonella_phage	31.9	1.8e-29
WP_105182803.1|506954_507260_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_005668576.1|507322_507706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005668575.1|507711_508212_-|tail	tail fiber protein	tail	O64327	Escherichia_phage	56.1	7.5e-39
WP_005668573.1|508204_508609_-	hypothetical protein	NA	K7PHM6	Enterobacterial_phage	32.1	7.5e-13
WP_005668571.1|508605_509151_-	hypothetical protein	NA	K7PKQ5	Enterobacteria_phage	45.6	4.2e-27
WP_105182804.1|509150_509456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005651203.1|509436_509760_-	DUF2190 family protein	NA	K7PJY3	Enterobacterial_phage	42.7	9.5e-11
WP_105182840.1|509838_511866_-|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	55.9	1.7e-198
WP_105182805.1|511816_513340_-|portal	phage portal protein	portal	S5MW34	Escherichia_phage	57.9	2.9e-158
WP_105182806.1|513343_513562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105182807.1|513558_515679_-|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	66.7	1.4e-272
WP_105182808.1|515681_516155_-	DUF1441 family protein	NA	K7PJY2	Enterobacterial_phage	53.0	1.9e-39
WP_042600478.1|516431_516821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105182809.1|516862_517144_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	74.4	2.1e-30
WP_105182810.1|517055_517379_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	56.1	7.0e-22
WP_006995063.1|517371_517974_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	55.4	3.9e-58
WP_032826240.1|517939_518299_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_005651339.1|518538_519057_-	antitermination protein	NA	G8C7V7	Escherichia_phage	34.0	3.4e-18
WP_042599558.1|519057_519603_-	NinG recombination protein	NA	D0UIK8	Aggregatibacter_phage	71.9	8.1e-63
WP_105182811.1|519691_520111_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	83.3	3.1e-62
WP_146115314.1|520147_520369_-	hypothetical protein	NA	A0A0M3LPX7	Mannheimia_phage	59.7	1.3e-16
WP_105182813.1|520365_521289_-	N-6 DNA methylase	NA	A0A0M3LQ47	Mannheimia_phage	58.5	2.9e-97
WP_105182814.1|521285_521867_-	adenine methyltransferase	NA	A0A0M3LNW2	Mannheimia_phage	55.5	1.1e-49
WP_105182815.1|521863_522505_-	replication P	NA	A0A1I9KFB0	Aeromonas_phage	24.9	8.2e-06
WP_105182816.1|522489_523248_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.8	3.6e-61
WP_044365078.1|523244_523919_-	antirepressor	NA	D0UIL6	Aggregatibacter_phage	55.6	5.0e-62
WP_048942423.1|523967_524408_-	hypothetical protein	NA	A0A0U4B0E3	Pseudomonas_phage	31.5	1.3e-13
WP_005688828.1|524462_524702_-	hypothetical protein	NA	A0A2I6PIE5	Escherichia_phage	49.2	7.0e-11
WP_105182817.1|524802_525468_+	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	44.2	8.7e-43
>prophage 3
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	529366	537418	1901558	integrase	Mannheimia_phage(28.57%)	12	528926:528940	540128:540142
528926:528940	attL	GGCAAAAGCGAAAGC	NA	NA	NA	NA
WP_105182819.1|529366_530287_+	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	71.9	2.8e-116
WP_105182820.1|530261_530912_+	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.2	1.0e-83
WP_105182821.1|530911_531346_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	36.8	7.5e-19
WP_105182822.1|531407_532430_+	hypothetical protein	NA	A0A0U4B0I3	Pseudomonas_phage	57.3	5.7e-33
WP_105182823.1|532554_533451_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	43.1	1.1e-56
WP_005661510.1|533447_533684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182824.1|533680_534040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105182825.1|534047_535214_+	DNA (cytosine-5-)-methyltransferase	NA	A0A2I7RFJ9	Vibrio_phage	47.6	8.0e-92
WP_048942568.1|535210_535453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048942569.1|535449_535728_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_048942571.1|535731_536043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005641600.1|536392_537418_+|integrase	site-specific integrase	integrase	K7PKD7	Enterobacteria_phage	35.4	7.4e-57
540128:540142	attR	GCTTTCGCTTTTGCC	NA	NA	NA	NA
>prophage 4
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1341675	1350193	1901558		Planktothrix_phage(16.67%)	8	NA	NA
WP_005686497.1|1341675_1342659_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
WP_005686498.1|1342661_1343654_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	5.7e-14
WP_005686499.1|1343663_1344551_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_074032816.1|1344565_1345537_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_074032815.1|1345656_1347840_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	1.8e-116
WP_005686506.1|1348455_1349091_-	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_005647466.1|1349091_1349517_-	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	7.8e-21
WP_005686508.1|1349509_1350193_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
>prophage 5
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1538591	1545270	1901558		Sodalis_phage(16.67%)	10	NA	NA
WP_005688173.1|1538591_1538882_+	integration host factor subunit alpha	NA	Q2A099	Sodalis_phage	38.2	1.5e-10
WP_005688175.1|1538934_1539420_+	endopeptidase	NA	A0A2H5BM69	Streptomyces_phage	39.3	2.3e-16
WP_012054395.1|1539485_1540439_+	WYL domain-containing transcriptional regulator	NA	NA	NA	NA	NA
WP_005688179.1|1540497_1540953_+	hypothetical protein	NA	I6X231	Vibriophage	63.0	3.5e-43
WP_005671438.1|1540936_1541647_+	NAD-dependent deacylase	NA	R9TG77	Vibrio_phage	40.1	3.2e-27
WP_005688182.1|1541725_1542220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688183.1|1542233_1542950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005688186.1|1543007_1544009_-	cytochrome c	NA	Q9JMN3	Wolbachia_phage	39.8	5.4e-20
WP_005688188.1|1544227_1544428_+	cell division protein FtsK	NA	NA	NA	NA	NA
WP_005688189.1|1544424_1545270_+	NAD-dependent deacetylase	NA	A0A1C3S788	Escherichia_phage	22.9	7.0e-05
>prophage 6
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1605419	1611613	1901558		Mannheimia_phage(57.14%)	13	NA	NA
WP_005687157.1|1605419_1605686_+	hypothetical protein	NA	A0A0N9STP5	Staphylococcus_phage	49.2	5.6e-09
WP_080281386.1|1605671_1606070_-	hypothetical protein	NA	A0A0M3LPU3	Mannheimia_phage	48.6	5.3e-11
WP_005650500.1|1606237_1606459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005650502.1|1606473_1606644_+	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_005687161.1|1607119_1607599_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005687162.1|1607600_1608530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005687164.1|1608597_1609254_-	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	58.9	5.5e-66
WP_005687166.1|1609384_1609591_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	67.7	1.9e-17
WP_005687168.1|1609611_1609908_+	hypothetical protein	NA	Q7Y5W3	Haemophilus_phage	68.4	5.8e-31
WP_005687170.1|1609955_1610567_+	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	45.3	1.7e-40
WP_005653907.1|1610723_1610906_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_005653910.1|1610937_1611387_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_005687174.1|1611430_1611613_-	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	45.5	1.2e-05
>prophage 7
NZ_CP020012	Haemophilus influenzae strain 6P24H2 chromosome, complete genome	1901558	1620083	1632086	1901558	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
WP_105182836.1|1620083_1622948_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.5	2.3e-148
WP_005659477.1|1622981_1623254_-	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
WP_079995721.1|1623315_1624749_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
WP_005687194.1|1624786_1625788_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.6	4.4e-46
WP_005662273.1|1625840_1626227_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_005687195.1|1626275_1626863_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
WP_005687196.1|1626875_1628432_-	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
WP_080358718.1|1628533_1629421_-	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.7	2.9e-17
WP_005656740.1|1629562_1630060_-	non-heme ferritin	NA	NA	NA	NA	NA
WP_005650594.1|1630075_1630564_-	non-heme ferritin	NA	NA	NA	NA	NA
WP_074031221.1|1631081_1632086_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
