assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002954165.1_ASM295416v1	NZ_CP026850	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 chromosome, complete genome	1	705068-705192	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GTTGGTTTTCCCCATACCTGCATGCTGGTTTTC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA|90aa|up_6|NZ_CP026850.1_699698_699968_-,NA|65aa|up_2|NZ_CP026850.1_701372_701567_-,NA|75aa|down_5|NZ_CP026850.1_707924_708149_+,NA|136aa|down_6|NZ_CP026850.1_708141_708549_+,NA|138aa|down_8|NZ_CP026850.1_709103_709517_+,NA|49aa|down_9|NZ_CP026850.1_709738_709885_+	NA|77aa|up_9|NZ_CP026850.1_697137_697368_-	pfam07041, DUF1327, Protein of unknown function (DUF1327)	NA|487aa|up_8|NZ_CP026850.1_697386_698847_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|187aa|up_7|NZ_CP026850.1_698846_699407_-	pfam13392, HNH_3, HNH endonuclease	NA|90aa|up_6|NZ_CP026850.1_699698_699968_-	NA	NA|210aa|up_5|NZ_CP026850.1_699975_700605_-	COG3179, COG3179, Predicted chitinase [General function prediction only]	NA|93aa|up_4|NZ_CP026850.1_700604_700883_-	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3	NA|130aa|up_3|NZ_CP026850.1_700872_701262_-	pfam16931, Phage_holin_8, Putative phage holin	NA|65aa|up_2|NZ_CP026850.1_701372_701567_-	NA	NA|272aa|up_1|NZ_CP026850.1_701770_702586_-	pfam03589, Antiterm, Antitermination protein	NA|624aa|up_0|NZ_CP026850.1_702589_704461_-	cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases	NA|66aa|down_0|NZ_CP026850.1_705497_705695_-	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|75aa|down_1|NZ_CP026850.1_705696_705921_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|233aa|down_2|NZ_CP026850.1_706033_706732_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|144aa|down_3|NZ_CP026850.1_706933_707365_+	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed	NA|129aa|down_4|NZ_CP026850.1_707431_707818_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|75aa|down_5|NZ_CP026850.1_707924_708149_+	NA	NA|136aa|down_6|NZ_CP026850.1_708141_708549_+	NA	NA|198aa|down_7|NZ_CP026850.1_708520_709114_+	pfam13392, HNH_3, HNH endonuclease	NA|138aa|down_8|NZ_CP026850.1_709103_709517_+	NA	NA|49aa|down_9|NZ_CP026850.1_709738_709885_+	NA
GCF_002954165.1_ASM295416v1	NZ_CP026850	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 chromosome, complete genome	2	2146991-2147074	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TGCCCTCACCCCCAGCCCCTCTCCCAC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|473aa|up_9|NZ_CP026850.1_2137223_2138642_+	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|224aa|up_8|NZ_CP026850.1_2138698_2139370_-	PRK15302, PRK15302, hypothetical protein; Provisional	NA|189aa|up_7|NZ_CP026850.1_2139595_2140162_-	PRK15301, PRK15301, hypothetical protein; Provisional	NA|806aa|up_6|NZ_CP026850.1_2140158_2142576_-	PRK15304, PRK15304, putative fimbrial outer membrane usher protein; Provisional	NA|235aa|up_5|NZ_CP026850.1_2142590_2143295_-	PRK09918, PRK09918, putative fimbrial chaperone protein; Provisional	NA|227aa|up_4|NZ_CP026850.1_2143406_2144087_-	PRK15302, PRK15302, hypothetical protein; Provisional	NA|166aa|up_3|NZ_CP026850.1_2144458_2144956_-	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional	NA|213aa|up_2|NZ_CP026850.1_2144961_2145600_-	PRK09481, sspA, stringent starvation protein A; Provisional	NA|131aa|up_1|NZ_CP026850.1_2145907_2146300_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|143aa|up_0|NZ_CP026850.1_2146315_2146744_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|375aa|down_0|NZ_CP026850.1_2147093_2148218_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|133aa|down_1|NZ_CP026850.1_2148407_2148806_+	PRK11677, PRK11677, DUF1043 family protein	NA|456aa|down_2|NZ_CP026850.1_2148976_2150344_+	PRK10139, PRK10139, serine endoprotease DegQ	NA|356aa|down_3|NZ_CP026850.1_2150436_2151504_+	PRK10898, PRK10898, serine endoprotease DegS	NA|313aa|down_4|NZ_CP026850.1_2151555_2152494_-	PRK05086, PRK05086, malate dehydrogenase; Provisional	NA|157aa|down_5|NZ_CP026850.1_2152891_2153362_+	PRK05066, PRK05066, transcriptional regulator ArgR	NA|88aa|down_6|NZ_CP026850.1_2153740_2154004_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|91aa|down_7|NZ_CP026850.1_2154063_2154336_-	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription]	NA|485aa|down_8|NZ_CP026850.1_2154381_2155836_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|656aa|down_9|NZ_CP026850.1_2155922_2157890_-	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional
GCF_002954165.1_ASM295416v1	NZ_CP026850	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 chromosome, complete genome	3	4223170-4223559	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Unclear	GTTCACTGCCGTGCAGGCAGCTTAGAAA,GTTCACTGCCGTGCAGGCAGCTTAGAAA,GTTCACTGCCGTGCAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,6,6	6	Unclear	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|378aa|up_9|NZ_CP026850.1_4209565_4210699_+	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L	NA|162aa|up_8|NZ_CP026850.1_4210695_4211181_+	pfam04612, T2SSM, Type II secretion system (T2SS), protein M	NA|266aa|up_7|NZ_CP026850.1_4211177_4211975_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|901aa|up_6|NZ_CP026850.1_4212228_4214931_+	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|147aa|up_5|NZ_CP026850.1_4215032_4215473_+	PRK15328, PRK15328, type III secretion system invasion protein IagB	NA|609aa|up_4|NZ_CP026850.1_4215607_4217434_+	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain	NA|338aa|up_3|NZ_CP026850.1_4217578_4218592_-	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|479aa|up_2|NZ_CP026850.1_4218684_4220121_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|334aa|up_1|NZ_CP026850.1_4220131_4221133_-	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|573aa|up_0|NZ_CP026850.1_4221171_4222890_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|323aa|down_0|NZ_CP026850.1_4223935_4224904_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|551aa|down_1|NZ_CP026850.1_4224914_4226567_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|down_2|NZ_CP026850.1_4226711_4227611_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|down_3|NZ_CP026850.1_4227787_4228483_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|down_4|NZ_CP026850.1_4228774_4230433_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|down_5|NZ_CP026850.1_4230429_4231386_-	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|372aa|down_6|NZ_CP026850.1_4231545_4232661_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|647aa|down_7|NZ_CP026850.1_4232657_4234598_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|down_8|NZ_CP026850.1_4234668_4234890_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|down_9|NZ_CP026850.1_4235157_4235478_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed
GCF_002954165.1_ASM295416v1	NZ_CP026850	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 chromosome, complete genome	4	4238873-4239680	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTGCAGGCAGCTTAGAAA,GTTCACTGCCGTGCAGGCAGCTTAGAAA,GTTCACTGCCGTGCAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,13,13	13	TypeI-F	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA|147aa|up_0|NZ_CP026850.1_4238254_4238695_+,NA	NA|300aa|up_9|NZ_CP026850.1_4226711_4227611_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_8|NZ_CP026850.1_4227787_4228483_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_7|NZ_CP026850.1_4228774_4230433_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_6|NZ_CP026850.1_4230429_4231386_-	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|372aa|up_5|NZ_CP026850.1_4231545_4232661_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|647aa|up_4|NZ_CP026850.1_4232657_4234598_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|74aa|up_3|NZ_CP026850.1_4234668_4234890_-	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|107aa|up_2|NZ_CP026850.1_4235157_4235478_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|760aa|up_1|NZ_CP026850.1_4235505_4237785_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|147aa|up_0|NZ_CP026850.1_4238254_4238695_+	NA	cas1|328aa|down_0|NZ_CP026850.1_4239943_4240927_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1073aa|down_1|NZ_CP026850.1_4240923_4244142_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|437aa|down_2|NZ_CP026850.1_4244531_4245842_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|312aa|down_3|NZ_CP026850.1_4245838_4246774_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|333aa|down_4|NZ_CP026850.1_4246787_4247786_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP026850.1_4247795_4248350_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|158aa|down_6|NZ_CP026850.1_4248372_4248846_-	COG5654, COG5654, Uncharacterized conserved protein [Function unknown]	NA|148aa|down_7|NZ_CP026850.1_4248842_4249286_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|73aa|down_8|NZ_CP026850.1_4251237_4251456_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_9|NZ_CP026850.1_4251740_4252445_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
GCF_002954165.1_ASM295416v1	NZ_CP026850	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 chromosome, complete genome	5	4249526-4251058	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTGCACTGCCGTACAGGCAGCTTAGAAA,GTGCACTGCCGTACAGGCAGCTTAGAAA,GTGCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	3	3	4249734-4249765|4249794-4249825|4250758-4250790	NZ_CP026850.1_3557743-3557712|NZ_CP026850.1_2298640-2298609|NZ_CP026850.1_1262385-1262353	I-F:I-F:I-F	21,25,25	25	TypeI-F	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA|147aa|up_8|NZ_CP026850.1_4238254_4238695_+,NA	NA|760aa|up_9|NZ_CP026850.1_4235505_4237785_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|147aa|up_8|NZ_CP026850.1_4238254_4238695_+	NA	cas1|328aa|up_7|NZ_CP026850.1_4239943_4240927_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1073aa|up_6|NZ_CP026850.1_4240923_4244142_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|437aa|up_5|NZ_CP026850.1_4244531_4245842_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|312aa|up_4|NZ_CP026850.1_4245838_4246774_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas7f|333aa|up_3|NZ_CP026850.1_4246787_4247786_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_2|NZ_CP026850.1_4247795_4248350_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|158aa|up_1|NZ_CP026850.1_4248372_4248846_-	COG5654, COG5654, Uncharacterized conserved protein [Function unknown]	NA|148aa|up_0|NZ_CP026850.1_4248842_4249286_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|73aa|down_0|NZ_CP026850.1_4251237_4251456_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP026850.1_4251740_4252445_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP026850.1_4252490_4254212_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP026850.1_4254211_4255978_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|323aa|down_4|NZ_CP026850.1_4256092_4257061_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP026850.1_4257604_4258099_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1223aa|down_6|NZ_CP026850.1_4258234_4261903_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|205aa|down_7|NZ_CP026850.1_4262030_4262645_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP026850.1_4262654_4263998_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP026850.1_4264090_4265383_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_002954165.1_ASM295416v1	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	1	65536-65670	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	GTGGGACCATGGTCCCAGTTAAATCCGGCGTGTGGAATCGATATTCCA	48	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA|74aa|up_8|NZ_CP026851.1_59013_59235_-,NA|156aa|up_6|NZ_CP026851.1_60447_60915_-,NA|68aa|up_5|NZ_CP026851.1_61289_61493_-,NA|88aa|up_4|NZ_CP026851.1_61521_61785_-,NA|177aa|down_4|NZ_CP026851.1_71388_71919_-,NA|97aa|down_5|NZ_CP026851.1_72049_72340_-	NA|141aa|up_9|NZ_CP026851.1_58535_58958_-	pfam07128, DUF1380, Protein of unknown function (DUF1380)	NA|74aa|up_8|NZ_CP026851.1_59013_59235_-	NA	NA|231aa|up_7|NZ_CP026851.1_59231_59924_-	PRK13699, PRK13699, putative methylase; Provisional	NA|156aa|up_6|NZ_CP026851.1_60447_60915_-	NA	NA|68aa|up_5|NZ_CP026851.1_61289_61493_-	NA	NA|88aa|up_4|NZ_CP026851.1_61521_61785_-	NA	NA|221aa|up_3|NZ_CP026851.1_61788_62451_-	pfam10784, Plasmid_stab_B, Plasmid stability protein	NA|324aa|up_2|NZ_CP026851.1_62453_63425_-	pfam06406, StbA, StbA protein	NA|144aa|up_1|NZ_CP026851.1_63656_64088_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|424aa|up_0|NZ_CP026851.1_64087_65359_+	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC	NA|322aa|down_0|NZ_CP026851.1_66008_66974_-	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein	NA|389aa|down_1|NZ_CP026851.1_66973_68140_-	PRK13705, PRK13705, plasmid-partitioning protein SopA; Provisional	NA|337aa|down_2|NZ_CP026851.1_68880_69891_+	pfam01051, Rep_3, Initiator Replication protein	NA|259aa|down_3|NZ_CP026851.1_70593_71370_-	pfam00589, Phage_integrase, Phage integrase family	NA|177aa|down_4|NZ_CP026851.1_71388_71919_-	NA	NA|97aa|down_5|NZ_CP026851.1_72049_72340_-	NA	NA|325aa|down_6|NZ_CP026851.1_72846_73821_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|374aa|down_7|NZ_CP026851.1_74078_75199_-	pfam13683, rve_3, Integrase core domain	NA|303aa|down_8|NZ_CP026851.1_75682_76591_+	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|117aa|down_9|NZ_CP026851.1_76976_77327_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]
