assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002954055.1_ASM295405v1	NZ_CP014132	Staphylococcus epidermidis strain FDAARGOS_161 chromosome, complete genome	1	910239-910334	1	CRISPRCasFinder	no		csa3,DinG,cas3,DEDDh,WYL	Orphan	CATAAGTGACACAAGCAATTAAAAATTGCAGTG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,DEDDh,WYL	NA|79aa|up_9|NZ_CP014132.1_903941_904178_-,NA|52aa|up_6|NZ_CP014132.1_906335_906491_+,NA|53aa|down_5|NZ_CP014132.1_914156_914315_-	NA|79aa|up_9|NZ_CP014132.1_903941_904178_-	NA	NA|196aa|up_8|NZ_CP014132.1_904391_904979_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|167aa|up_7|NZ_CP014132.1_905249_905750_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|52aa|up_6|NZ_CP014132.1_906335_906491_+	NA	NA|141aa|up_5|NZ_CP014132.1_906674_907097_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_4|NZ_CP014132.1_907257_907974_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|181aa|up_3|NZ_CP014132.1_908054_908597_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|108aa|up_2|NZ_CP014132.1_908779_909103_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|118aa|up_1|NZ_CP014132.1_909245_909599_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_0|NZ_CP014132.1_909772_910153_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|129aa|down_0|NZ_CP014132.1_910412_910799_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP014132.1_910791_911088_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP014132.1_911340_912366_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP014132.1_912358_913054_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|271aa|down_4|NZ_CP014132.1_913074_913887_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|53aa|down_5|NZ_CP014132.1_914156_914315_-	NA	NA|64aa|down_6|NZ_CP014132.1_914489_914681_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_7|NZ_CP014132.1_914746_915607_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_8|NZ_CP014132.1_915928_916690_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_9|NZ_CP014132.1_916784_918092_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_002954055.1_ASM295405v1	NZ_CP014132	Staphylococcus epidermidis strain FDAARGOS_161 chromosome, complete genome	2	1071316-1071799	2	CRISPRCasFinder	no		csa3,DinG,cas3,DEDDh,WYL	Orphan	AAAAGAGAAAGAAATAAAAGCTAAAGATAAAACT	34	0	0	NA	NA	NA	5	5	Orphan	csa3,DinG,cas3,DEDDh,WYL	NA|103aa|up_6|NZ_CP014132.1_1065632_1065941_+,NA|110aa|up_5|NZ_CP014132.1_1065912_1066242_+,NA|113aa|up_4|NZ_CP014132.1_1066241_1066580_+,NA|146aa|up_3|NZ_CP014132.1_1066579_1067017_+,NA|235aa|up_2|NZ_CP014132.1_1067022_1067727_+,NA|115aa|up_1|NZ_CP014132.1_1067750_1068095_+,NA|71aa|up_0|NZ_CP014132.1_1068148_1068361_+,NA|137aa|down_2|NZ_CP014132.1_1076851_1077262_+,NA|94aa|down_3|NZ_CP014132.1_1077298_1077580_+,NA|249aa|down_7|NZ_CP014132.1_1080928_1081675_-,NA|79aa|down_9|NZ_CP014132.1_1083347_1083584_+	NA|379aa|up_9|NZ_CP014132.1_1062556_1063693_+	TIGR01537, portal_protein, phage portal protein, HK97 family	NA|244aa|up_8|NZ_CP014132.1_1063692_1064424_+	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease	NA|386aa|up_7|NZ_CP014132.1_1064448_1065606_+	pfam05065, Phage_capsid, Phage capsid family	NA|103aa|up_6|NZ_CP014132.1_1065632_1065941_+	NA	NA|110aa|up_5|NZ_CP014132.1_1065912_1066242_+	NA	NA|113aa|up_4|NZ_CP014132.1_1066241_1066580_+	NA	NA|146aa|up_3|NZ_CP014132.1_1066579_1067017_+	NA	NA|235aa|up_2|NZ_CP014132.1_1067022_1067727_+	NA	NA|115aa|up_1|NZ_CP014132.1_1067750_1068095_+	NA	NA|71aa|up_0|NZ_CP014132.1_1068148_1068361_+	NA	NA|257aa|down_0|NZ_CP014132.1_1072608_1073379_+	COG4722, COG4722, Phage-related protein [Function unknown]	NA|1152aa|down_1|NZ_CP014132.1_1073375_1076831_+	COG4926, PblB, Phage-related protein [Function unknown]	NA|137aa|down_2|NZ_CP014132.1_1076851_1077262_+	NA	NA|94aa|down_3|NZ_CP014132.1_1077298_1077580_+	NA	NA|129aa|down_4|NZ_CP014132.1_1077581_1077968_+	pfam05105, Phage_holin_4_1, Bacteriophage holin family	NA|307aa|down_5|NZ_CP014132.1_1078020_1078941_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|559aa|down_6|NZ_CP014132.1_1078937_1080614_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|down_7|NZ_CP014132.1_1080928_1081675_-	NA	NA|84aa|down_8|NZ_CP014132.1_1082892_1083144_+	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|79aa|down_9|NZ_CP014132.1_1083347_1083584_+	NA
GCF_002954055.1_ASM295405v1	NZ_CP014132	Staphylococcus epidermidis strain FDAARGOS_161 chromosome, complete genome	3	1086766-1086856	3	CRISPRCasFinder	no		csa3,DinG,cas3,DEDDh,WYL	Orphan	CCGAACCCCAACTTGCCTTGTCTGTAGAATTT	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,DEDDh,WYL	NA|249aa|up_6|NZ_CP014132.1_1080928_1081675_-,NA|79aa|up_4|NZ_CP014132.1_1083347_1083584_+,NA|53aa|up_2|NZ_CP014132.1_1084827_1084986_-,NA	NA|129aa|up_9|NZ_CP014132.1_1077581_1077968_+	pfam05105, Phage_holin_4_1, Bacteriophage holin family	NA|307aa|up_8|NZ_CP014132.1_1078020_1078941_+	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls	NA|559aa|up_7|NZ_CP014132.1_1078937_1080614_-	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|249aa|up_6|NZ_CP014132.1_1080928_1081675_-	NA	NA|84aa|up_5|NZ_CP014132.1_1082892_1083144_+	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|79aa|up_4|NZ_CP014132.1_1083347_1083584_+	NA	NA|114aa|up_3|NZ_CP014132.1_1083796_1084138_+	cd03510, Rhizobitoxine-FADS-like, This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins	NA|53aa|up_2|NZ_CP014132.1_1084827_1084986_-	NA	NA|72aa|up_1|NZ_CP014132.1_1085636_1085852_-	COG2314, XynA, Predicted membrane protein [Function unknown]	NA|186aa|up_0|NZ_CP014132.1_1086082_1086640_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|313aa|down_0|NZ_CP014132.1_1086991_1087930_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|454aa|down_1|NZ_CP014132.1_1088108_1089470_+	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|558aa|down_2|NZ_CP014132.1_1089456_1091130_+	COG1165, MenD, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]	NA|268aa|down_3|NZ_CP014132.1_1091116_1091920_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|273aa|down_4|NZ_CP014132.1_1091912_1092731_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|395aa|down_5|NZ_CP014132.1_1093075_1094260_-	PRK07683, PRK07683, aminotransferase A; Validated	NA|336aa|down_6|NZ_CP014132.1_1094402_1095410_-	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|140aa|down_7|NZ_CP014132.1_1095563_1095983_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|1336aa|down_8|NZ_CP014132.1_1096222_1100230_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|141aa|down_9|NZ_CP014132.1_1100470_1100893_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain
GCF_002954055.1_ASM295405v1	NZ_CP014132	Staphylococcus epidermidis strain FDAARGOS_161 chromosome, complete genome	4	2437574-2437657	4	CRISPRCasFinder	no		csa3,DinG,cas3,DEDDh,WYL	Orphan	CAACTTGCCTTGTCCGTGGAATTTC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,DEDDh,WYL	NA,NA|59aa|down_6|NZ_CP014132.1_2444796_2444973_-,NA|52aa|down_7|NZ_CP014132.1_2445298_2445454_+	NA|256aa|up_9|NZ_CP014132.1_2425272_2426040_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|333aa|up_8|NZ_CP014132.1_2426041_2427040_+	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E	NA|205aa|up_7|NZ_CP014132.1_2427147_2427762_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|655aa|up_6|NZ_CP014132.1_2427935_2429900_+	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]	NA|596aa|up_5|NZ_CP014132.1_2430128_2431916_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|350aa|up_4|NZ_CP014132.1_2432263_2433313_+	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|475aa|up_3|NZ_CP014132.1_2433561_2434986_+	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|316aa|up_2|NZ_CP014132.1_2435056_2436004_-	cd01017, AdcA, Metal binding protein AdcA	NA|94aa|up_1|NZ_CP014132.1_2436170_2436452_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|266aa|up_0|NZ_CP014132.1_2436713_2437511_+	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|498aa|down_0|NZ_CP014132.1_2438338_2439832_-	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|221aa|down_1|NZ_CP014132.1_2440209_2440872_-	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|331aa|down_2|NZ_CP014132.1_2441118_2442111_+	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional	NA|270aa|down_3|NZ_CP014132.1_2442297_2443107_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|204aa|down_4|NZ_CP014132.1_2443451_2444063_-	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein	NA|165aa|down_5|NZ_CP014132.1_2444238_2444733_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|59aa|down_6|NZ_CP014132.1_2444796_2444973_-	NA	NA|52aa|down_7|NZ_CP014132.1_2445298_2445454_+	NA	NA|300aa|down_8|NZ_CP014132.1_2445686_2446586_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|227aa|down_9|NZ_CP014132.1_2446598_2447279_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]
GCF_002954055.1_ASM295405v1	NZ_CP014131	Staphylococcus epidermidis strain FDAARGOS_161 plasmid unnamed2, complete sequence	1	4609-4721	1	CRISPRCasFinder	no			Orphan	AGGGACGTTTTTAAAATTATGTCACTTATAT	31	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,DEDDh,WYL	NA|140aa|up_1|NZ_CP014131.1_1974_2394_-,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|460aa|up_2|NZ_CP014131.1_560_1940_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|140aa|up_1|NZ_CP014131.1_1974_2394_-	NA	NA|403aa|up_0|NZ_CP014131.1_2848_4057_+	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|286aa|down_0|NZ_CP014131.1_4740_5598_+	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|202aa|down_1|NZ_CP014131.1_5645_6251_-	pfam01381, HTH_3, Helix-turn-helix	NA|308aa|down_2|NZ_CP014131.1_6849_7773_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|297aa|down_3|NZ_CP014131.1_7765_8656_-	PRK08223, PRK08223, hypothetical protein; Validated	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
