assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002947315.1_ASM294731v1	NZ_CP026704	Providencia stuartii strain AR_0026	1	283410-283558	1,1	PILER-CR,CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	Type I-A	TTTCTAAGCTGCCTATACGGCAGTACACA,TTTCTAAGCTGCCTATACGGCAGTACAC	29,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	NA|139aa|up_7|NZ_CP026704.1_271856_272273_+,NA|191aa|up_4|NZ_CP026704.1_279295_279868_-,NA|111aa|up_3|NZ_CP026704.1_280885_281218_+,NA|107aa|up_1|NZ_CP026704.1_282587_282908_-,NA|116aa|up_0|NZ_CP026704.1_282908_283256_-,NA|381aa|down_9|NZ_CP026704.1_291810_292953_-	NA|627aa|up_9|NZ_CP026704.1_268650_270531_+	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional	NA|366aa|up_8|NZ_CP026704.1_270523_271621_+	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional	NA|139aa|up_7|NZ_CP026704.1_271856_272273_+	NA	NA|477aa|up_6|NZ_CP026704.1_273062_274493_-	PRK09852, PRK09852, cryptic 6-phospho-beta-glucosidase; Provisional	NA|472aa|up_5|NZ_CP026704.1_276821_278237_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|191aa|up_4|NZ_CP026704.1_279295_279868_-	NA	NA|111aa|up_3|NZ_CP026704.1_280885_281218_+	NA	NA|308aa|up_2|NZ_CP026704.1_281386_282310_-	PRK08025, PRK08025, kdo(2)-lipid IV(A) palmitoleoyltransferase	NA|107aa|up_1|NZ_CP026704.1_282587_282908_-	NA	NA|116aa|up_0|NZ_CP026704.1_282908_283256_-	NA	NA|394aa|down_0|NZ_CP026704.1_283762_284943_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|39aa|down_1|NZ_CP026704.1_285201_285318_+	pfam11682, zinc_ribbon_11, Probable zinc-ribbon	NA|142aa|down_2|NZ_CP026704.1_285345_285771_-	PRK10026, PRK10026, arsenate reductase (glutaredoxin)	NA|430aa|down_3|NZ_CP026704.1_285781_287071_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|584aa|down_4|NZ_CP026704.1_287126_288878_-	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase	NA|122aa|down_5|NZ_CP026704.1_288891_289257_-	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	csa3|112aa|down_6|NZ_CP026704.1_289304_289640_-	PRK10141, PRK10141, DNA-binding transcriptional repressor ArsR; Provisional	NA|286aa|down_7|NZ_CP026704.1_290258_291116_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|down_8|NZ_CP026704.1_291133_291346_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|381aa|down_9|NZ_CP026704.1_291810_292953_-	NA
GCF_002947315.1_ASM294731v1	NZ_CP026704	Providencia stuartii strain AR_0026	2	3006937-3007040	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	Orphan	TGTGATTATTGCCATAGCCGGAAAGGGTAA	30	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	NA|60aa|up_8|NZ_CP026704.1_3001201_3001381_+,NA|70aa|up_7|NZ_CP026704.1_3001377_3001587_+,NA|58aa|up_6|NZ_CP026704.1_3001583_3001757_+,NA|65aa|up_5|NZ_CP026704.1_3001756_3001951_+,NA|199aa|up_4|NZ_CP026704.1_3001950_3002547_+,NA|64aa|up_0|NZ_CP026704.1_3006622_3006814_+,NA|58aa|down_0|NZ_CP026704.1_3007323_3007497_+,NA|63aa|down_1|NZ_CP026704.1_3007574_3007763_+,NA|135aa|down_3|NZ_CP026704.1_3010361_3010766_-,NA|223aa|down_7|NZ_CP026704.1_3014611_3015280_+,NA|151aa|down_8|NZ_CP026704.1_3016017_3016470_+,NA|95aa|down_9|NZ_CP026704.1_3016636_3016921_-	NA|314aa|up_9|NZ_CP026704.1_3000263_3001205_+	pfam10554, Phage_ASH, Ash protein family	NA|60aa|up_8|NZ_CP026704.1_3001201_3001381_+	NA	NA|70aa|up_7|NZ_CP026704.1_3001377_3001587_+	NA	NA|58aa|up_6|NZ_CP026704.1_3001583_3001757_+	NA	NA|65aa|up_5|NZ_CP026704.1_3001756_3001951_+	NA	NA|199aa|up_4|NZ_CP026704.1_3001950_3002547_+	NA	NA|791aa|up_3|NZ_CP026704.1_3002561_3004934_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|246aa|up_2|NZ_CP026704.1_3005313_3006051_+	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|151aa|up_1|NZ_CP026704.1_3006093_3006546_+	pfam04352, ProQ, ProQ/FINO family	NA|64aa|up_0|NZ_CP026704.1_3006622_3006814_+	NA	NA|58aa|down_0|NZ_CP026704.1_3007323_3007497_+	NA	NA|63aa|down_1|NZ_CP026704.1_3007574_3007763_+	NA	NA|191aa|down_2|NZ_CP026704.1_3008213_3008786_+	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561	NA|135aa|down_3|NZ_CP026704.1_3010361_3010766_-	NA	NA|219aa|down_4|NZ_CP026704.1_3010870_3011527_-	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|135aa|down_5|NZ_CP026704.1_3012394_3012799_-	pfam10008, DUF2251, Uncharacterized protein conserved in bacteria (DUF2251)	NA|296aa|down_6|NZ_CP026704.1_3013083_3013971_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|223aa|down_7|NZ_CP026704.1_3014611_3015280_+	NA	NA|151aa|down_8|NZ_CP026704.1_3016017_3016470_+	NA	NA|95aa|down_9|NZ_CP026704.1_3016636_3016921_-	NA
GCF_002947315.1_ASM294731v1	NZ_CP026704	Providencia stuartii strain AR_0026	3	3157730-3158135	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas5f,cas7f,cas6f	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	Unclear	TTTCTAAGCTGCCTATACGGCAGTGAAC,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	5,6,5	6	Unclear	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	NA,NA	NA|135aa|up_9|NZ_CP026704.1_3147561_3147966_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|280aa|up_8|NZ_CP026704.1_3147978_3148818_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|407aa|up_7|NZ_CP026704.1_3148848_3150069_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|252aa|up_6|NZ_CP026704.1_3150084_3150840_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|261aa|up_5|NZ_CP026704.1_3150859_3151642_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|244aa|up_4|NZ_CP026704.1_3151767_3152499_+	PRK00249, flgH, flagellar basal body L-ring protein FlgH	NA|368aa|up_3|NZ_CP026704.1_3152540_3153644_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|327aa|up_2|NZ_CP026704.1_3153643_3154624_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|547aa|up_1|NZ_CP026704.1_3154868_3156509_+	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|312aa|up_0|NZ_CP026704.1_3156536_3157472_+	PRK08027, flgL, flagellar hook-filament junction protein FlgL	cas1|326aa|down_0|NZ_CP026704.1_3158400_3159378_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1183aa|down_1|NZ_CP026704.1_3159374_3162923_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|269aa|down_2|NZ_CP026704.1_3163744_3164550_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	cas5f|316aa|down_3|NZ_CP026704.1_3165213_3166161_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|down_4|NZ_CP026704.1_3166163_3167189_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|212aa|down_5|NZ_CP026704.1_3167197_3167833_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|261aa|down_6|NZ_CP026704.1_3169981_3170764_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|down_7|NZ_CP026704.1_3170766_3171036_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|143aa|down_8|NZ_CP026704.1_3172673_3173102_-	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|139aa|down_9|NZ_CP026704.1_3173126_3173543_-	PRK07963, fliN, flagellar motor switch protein FliN; Validated
GCF_002947315.1_ASM294731v1	NZ_CP026704	Providencia stuartii strain AR_0026	4	3167974-3168542	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3-cas2,cas5f,cas7f,cas6f	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	Unclear	TTTCTAAGCTGCCTATGCGGCAGTGAAC,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGCATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,9	9	Unclear	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	NA,NA	NA|368aa|up_9|NZ_CP026704.1_3152540_3153644_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|327aa|up_8|NZ_CP026704.1_3153643_3154624_+	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ	NA|547aa|up_7|NZ_CP026704.1_3154868_3156509_+	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|312aa|up_6|NZ_CP026704.1_3156536_3157472_+	PRK08027, flgL, flagellar hook-filament junction protein FlgL	cas1|326aa|up_5|NZ_CP026704.1_3158400_3159378_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3-cas2|1183aa|up_4|NZ_CP026704.1_3159374_3162923_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	NA|269aa|up_3|NZ_CP026704.1_3163744_3164550_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	cas5f|316aa|up_2|NZ_CP026704.1_3165213_3166161_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|342aa|up_1|NZ_CP026704.1_3166163_3167189_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|212aa|up_0|NZ_CP026704.1_3167197_3167833_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|261aa|down_0|NZ_CP026704.1_3169981_3170764_-	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|90aa|down_1|NZ_CP026704.1_3170766_3171036_-	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|143aa|down_2|NZ_CP026704.1_3172673_3173102_-	PRK11486, PRK11486, flagellar type III secretion system protein FliO	NA|139aa|down_3|NZ_CP026704.1_3173126_3173543_-	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|336aa|down_4|NZ_CP026704.1_3173535_3174543_-	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|161aa|down_5|NZ_CP026704.1_3174548_3175031_-	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|454aa|down_6|NZ_CP026704.1_3175196_3176558_-	PRK10118, PRK10118, flagellar hook length control protein FliK	NA|148aa|down_7|NZ_CP026704.1_3176558_3177002_-	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|455aa|down_8|NZ_CP026704.1_3177012_3178377_-	PRK07960, fliI, flagellum-specific ATP synthase FliI	NA|244aa|down_9|NZ_CP026704.1_3178373_3179105_-	PRK05687, fliH, flagellar assembly protein FliH
GCF_002947315.1_ASM294731v1	NZ_CP026704	Providencia stuartii strain AR_0026	5	3242121-3242688	4,5,3	PILER-CR,CRISPRCasFinder,CRT	no		WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	Orphan	TTTCTAAGCTGCCTATACGGCAGTGAAC,GTTCACTGCCGTATAGGCAGCTTAGAAA,GTTCACTGCCGTATAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	9,9,9	9	Orphan	WYL,csa3,DEDDh,cas3,cas14j,DinG,cas1,cas3-cas2,cas5f,cas7f,cas6f	NA|89aa|up_7|NZ_CP026704.1_3232506_3232773_+,NA|57aa|up_0|NZ_CP026704.1_3241388_3241559_+,NA|144aa|down_6|NZ_CP026704.1_3251358_3251790_-	NA|930aa|up_9|NZ_CP026704.1_3228056_3230846_+	pfam10101, DUF2339, Predicted membrane protein (DUF2339)	NA|491aa|up_8|NZ_CP026704.1_3230832_3232305_+	pfam13163, DUF3999, Protein of unknown function (DUF3999)	NA|89aa|up_7|NZ_CP026704.1_3232506_3232773_+	NA	NA|135aa|up_6|NZ_CP026704.1_3232846_3233251_+	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|139aa|up_5|NZ_CP026704.1_3233459_3233876_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|518aa|up_4|NZ_CP026704.1_3234170_3235724_+	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|411aa|up_3|NZ_CP026704.1_3235759_3236992_+	PRK13381, PRK13381, peptidase T; Provisional	NA|611aa|up_2|NZ_CP026704.1_3237873_3239706_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|183aa|up_1|NZ_CP026704.1_3239763_3240312_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|57aa|up_0|NZ_CP026704.1_3241388_3241559_+	NA	NA|158aa|down_0|NZ_CP026704.1_3242916_3243390_+	pfam11776, RcnB, Nickel/cobalt transporter regulator	NA|122aa|down_1|NZ_CP026704.1_3243515_3243881_-	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown]	NA|255aa|down_2|NZ_CP026704.1_3245225_3245990_+	pfam01298, TbpB_B_D, C-lobe and N-lobe beta barrels of Tf-binding protein B	NA|487aa|down_3|NZ_CP026704.1_3246057_3247518_+	pfam04575, DUF560, Protein of unknown function (DUF560)	NA|1000aa|down_4|NZ_CP026704.1_3247535_3250535_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|252aa|down_5|NZ_CP026704.1_3250583_3251339_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|144aa|down_6|NZ_CP026704.1_3251358_3251790_-	NA	NA|548aa|down_7|NZ_CP026704.1_3252813_3254457_-	PRK07064, PRK07064, thiamine pyrophosphate-binding protein	NA|490aa|down_8|NZ_CP026704.1_3254525_3255995_-	cd07114, ALDH_DhaS, Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like	NA|265aa|down_9|NZ_CP026704.1_3256008_3256803_-	PRK13303, PRK13303, aspartate dehydrogenase
