assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002946715.1_ASM294671v1	NZ_CP026723	Escherichia coli strain 266917_2 chromosome, complete genome	1	1830646-1831284	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	NA,NA	NA|254aa|up_9|NZ_CP026723.1_1822458_1823220_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP026723.1_1823200_1824250_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP026723.1_1824246_1824726_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP026723.1_1824725_1825436_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP026723.1_1825454_1825766_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP026723.1_1825959_1826283_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP026723.1_1826332_1826938_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP026723.1_1826937_1828365_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP026723.1_1828366_1829275_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP026723.1_1829526_1830564_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP026723.1_1831380_1831674_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas6e|217aa|down_1|NZ_CP026723.1_1832589_1833240_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP026723.1_1833221_1833968_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|NZ_CP026723.1_1833978_1835034_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_4|NZ_CP026723.1_1835048_1835585_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_5|NZ_CP026723.1_1835581_1837144_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP026723.1_1837241_1839941_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|NZ_CP026723.1_1840135_1840288_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP026723.1_1840552_1841287_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP026723.1_1841360_1843073_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_002946715.1_ASM294671v1	NZ_CP026723	Escherichia coli strain 266917_2 chromosome, complete genome	2	1858421-1859425	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,15	16	Orphan	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	NA,NA	NA|87aa|up_9|NZ_CP026723.1_1846892_1847153_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP026723.1_1847169_1847745_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP026723.1_1847879_1849228_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP026723.1_1849327_1850188_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP026723.1_1850184_1850964_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP026723.1_1850941_1852279_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP026723.1_1852372_1853827_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP026723.1_1853896_1854682_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP026723.1_1855000_1856278_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP026723.1_1856304_1857783_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP026723.1_1859763_1860435_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP026723.1_1860728_1861601_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP026723.1_1861660_1862959_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP026723.1_1863046_1864684_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP026723.1_1864911_1865703_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP026723.1_1865774_1866110_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP026723.1_1866109_1866358_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP026723.1_1866435_1868670_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP026723.1_1868717_1870019_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP026723.1_1870075_1872832_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_002946715.1_ASM294671v1	NZ_CP026723	Escherichia coli strain 266917_2 chromosome, complete genome	3	4574093-4574234	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	NA|36aa|up_4|NZ_CP026723.1_4570315_4570423_-,NA	NA|354aa|up_9|NZ_CP026723.1_4563556_4564618_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP026723.1_4564614_4565346_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|817aa|up_7|NZ_CP026723.1_4565360_4567811_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP026723.1_4567870_4568437_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP026723.1_4568826_4570110_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP026723.1_4570315_4570423_-	NA	NA|130aa|up_3|NZ_CP026723.1_4570818_4571208_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP026723.1_4571201_4571549_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP026723.1_4571548_4573315_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP026723.1_4573330_4574047_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP026723.1_4574396_4577198_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP026723.1_4577212_4578430_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP026723.1_4578523_4579690_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP026723.1_4579689_4580559_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|302aa|down_4|NZ_CP026723.1_4581224_4582130_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_5|NZ_CP026723.1_4582163_4582766_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_6|NZ_CP026723.1_4582775_4584428_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_7|NZ_CP026723.1_4584535_4585816_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_8|NZ_CP026723.1_4585976_4586294_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)	NA|457aa|down_9|NZ_CP026723.1_4586290_4587661_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA
GCF_002946715.1_ASM294671v1	NZ_CP026723	Escherichia coli strain 266917_2 chromosome, complete genome	4	5030333-5030421	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	Orphan	GGTTGTCCAACGGTTGTCCAACG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas14j,csa3,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,TnsE_C,c2c9_V-U4,RT,PrimPol	NA|103aa|up_9|NZ_CP026723.1_5025482_5025791_-,NA|157aa|up_6|NZ_CP026723.1_5026380_5026851_-,NA|102aa|up_4|NZ_CP026723.1_5027051_5027357_-,NA|123aa|up_3|NZ_CP026723.1_5027975_5028344_-,NA|109aa|down_1|NZ_CP026723.1_5032340_5032667_+	NA|103aa|up_9|NZ_CP026723.1_5025482_5025791_-	NA	NA|51aa|up_8|NZ_CP026723.1_5025875_5026028_-	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|45aa|up_7|NZ_CP026723.1_5026012_5026147_-	pfam08134, cIII, cIII protein family	NA|157aa|up_6|NZ_CP026723.1_5026380_5026851_-	NA	NA|46aa|up_5|NZ_CP026723.1_5026905_5027043_-	pfam17583, DUF5484, Family of unknown function (DUF5484)	NA|102aa|up_4|NZ_CP026723.1_5027051_5027357_-	NA	NA|123aa|up_3|NZ_CP026723.1_5027975_5028344_-	NA	NA|239aa|up_2|NZ_CP026723.1_5028361_5029078_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|65aa|up_1|NZ_CP026723.1_5029184_5029379_+	pfam09048, Cro, Cro	NA|93aa|up_0|NZ_CP026723.1_5029487_5029766_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP026723.1_5030828_5032265_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|109aa|down_1|NZ_CP026723.1_5032340_5032667_+	NA	NA|147aa|down_2|NZ_CP026723.1_5032880_5033321_+	pfam05772, NinB, NinB protein	NA|176aa|down_3|NZ_CP026723.1_5033317_5033845_+	TIGR01712, DNA_N-6-adenine-methyltransferase_M	NA|61aa|down_4|NZ_CP026723.1_5033841_5034024_+	pfam05322, NinE, NINE Protein	NA|57aa|down_5|NZ_CP026723.1_5034020_5034191_+	pfam05810, NinF, NinF protein	NA|241aa|down_6|NZ_CP026723.1_5034183_5034906_+	COG3645, COG3645, Uncharacterized phage-encoded protein [Function unknown]	NA|97aa|down_7|NZ_CP026723.1_5034905_5035196_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_8|NZ_CP026723.1_5035192_5035555_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|63aa|down_9|NZ_CP026723.1_5035551_5035740_+	pfam06322, Phage_NinH, Phage NinH protein
