The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	285644	301830	4119932		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|285644_286157_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|286606_287083_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287088_287787_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|287798_289166_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|289159_290236_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|290229_290823_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|290815_292348_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|292358_293609_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|293633_297440_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|297645_298518_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|298626_299508_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|299544_300102_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|300139_301123_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|301161_301830_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	588704	659482	4119932	transposase,tRNA,protease,coat	Streptococcus_phage(33.33%)	55	NA	NA
WP_003425122.1|588704_589421_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003436985.1|589499_590810_+	methylase	NA	NA	NA	NA	NA
WP_003425127.1|590909_591446_+	signal peptidase I	NA	NA	NA	NA	NA
WP_003425129.1|591611_592148_+	signal peptidase I	NA	NA	NA	NA	NA
WP_009888346.1|592157_592913_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_009888347.1|592986_594654_+	nucleoside kinase	NA	NA	NA	NA	NA
WP_003417962.1|595281_596211_+	glutaminase A	NA	NA	NA	NA	NA
WP_003417965.1|596308_596872_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888348.1|597359_598196_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
WP_009888349.1|598447_599443_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_009888350.1|599699_600104_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_009888351.1|601103_602018_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_009888352.1|602123_604361_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
WP_025984766.1|604992_605610_+	endonuclease III	NA	NA	NA	NA	NA
WP_003429657.1|605803_606274_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_009888355.1|606309_607158_+	DegV family protein	NA	NA	NA	NA	NA
WP_009892666.1|607530_608535_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888358.1|608659_609772_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003439005.1|610194_610956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417993.1|610958_611777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439009.1|611956_612559_+	DUF445 family protein	NA	NA	NA	NA	NA
WP_009888359.1|613421_615341_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_100882489.1|616770_616920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816012.1|617276_618395_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
WP_009888362.1|619392_620430_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_009888364.1|620422_621109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888365.1|621120_621441_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888366.1|621801_623142_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
WP_009888368.1|623819_624389_-	hydrolase	NA	NA	NA	NA	NA
WP_009888369.1|624549_625800_-	MFS transporter	NA	NA	NA	NA	NA
WP_074014400.1|626091_626679_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888371.1|627000_628461_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003429639.1|628834_629440_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888372.1|629442_632010_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
WP_003437599.1|632002_632167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888376.1|633275_633551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429630.1|633570_633858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892676.1|635412_636522_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
WP_009888381.1|636586_638710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888382.1|638724_643935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888383.1|644159_646259_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009892678.1|646301_646697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|647757_647946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888386.1|648130_648571_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009888387.1|648906_650220_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888388.1|650237_650774_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888389.1|651292_651514_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888390.1|651513_651777_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418062.1|651838_652411_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888391.1|653228_653762_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
WP_009888392.1|653986_654166_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012816016.1|654772_655021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888395.1|655868_656282_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009888396.1|656356_656866_+	GrpB family protein	NA	NA	NA	NA	NA
WP_009888399.1|658372_659482_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 3
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	1403195	1466094	4119932	protease,tail,portal,plate,integrase,tRNA	Clostridium_phage(46.15%)	61	1408353:1408369	1469523:1469539
WP_003428224.1|1403195_1403930_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_009889104.1|1404052_1406464_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1406466_1407525_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1407518_1408853_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
1408353:1408369	attL	AAAGAAGATATATTAAA	NA	NA	NA	NA
WP_009889106.1|1408839_1409382_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1409669_1410716_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1410891_1412433_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1413067_1414849_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889108.1|1414930_1415461_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009889109.1|1415500_1416325_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1416581_1417490_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1417633_1419079_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1419389_1419842_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1420254_1421832_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1421990_1422743_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1422881_1424222_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1424333_1425530_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1425914_1426865_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1427025_1427778_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1427869_1428646_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1428960_1430859_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1430986_1432108_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1432306_1432639_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1432625_1433684_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1433676_1434747_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1434848_1435385_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1435501_1436209_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1436210_1436927_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1436928_1437687_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1437830_1439219_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1439294_1440116_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009892989.1|1440366_1441521_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1441703_1441904_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1442324_1442753_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1442895_1443651_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889132.1|1443771_1444188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428186.1|1444351_1444858_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1444939_1445260_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1445428_1445626_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1445730_1446171_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1446419_1446863_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1446867_1447932_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1447945_1448374_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1448487_1448934_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1448960_1449128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1449127_1451581_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1451580_1452003_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1452284_1453814_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1453829_1454156_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1454155_1454584_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1454576_1455629_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1455625_1456324_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1456324_1457311_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1457332_1462510_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1462526_1462880_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1463142_1463403_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1463627_1464083_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1464310_1464730_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1465028_1465238_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1465257_1465479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1465695_1466094_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1469523:1469539	attR	TTTAATATATCTTCTTT	NA	NA	NA	NA
>prophage 4
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	1548786	1557331	4119932		Pandoravirus(33.33%)	10	NA	NA
WP_009889249.1|1548786_1549371_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_074014342.1|1549363_1550722_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
WP_003438634.1|1550711_1551455_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_009889253.1|1551488_1552190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1552215_1552788_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_012816129.1|1552841_1553645_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
WP_009889257.1|1553655_1554021_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1554013_1554520_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1554500_1555286_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1555540_1557331_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 5
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	1684743	1739874	4119932	tail,portal,holin,plate,integrase,terminase	Clostridium_phage(78.57%)	68	1678746:1678761	1687966:1687981
1678746:1678761	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_003429803.1|1684743_1685874_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1685952_1686660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888801.1|1686672_1687542_-	protein kinase	NA	NA	NA	NA	NA
WP_003429804.1|1688161_1688668_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687966:1687981	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_009893126.1|1688743_1689292_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1689303_1689645_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1689821_1690025_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1690072_1690882_+	phage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1690928_1691138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1691147_1691522_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1691597_1691795_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1691825_1692218_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1692198_1692348_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1692418_1692856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1692867_1694034_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1694048_1694384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1694436_1695009_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1695031_1695604_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1695603_1697562_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1697573_1699991_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1700272_1700599_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1700547_1701918_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888825.1|1702071_1702551_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1703577_1704552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1704572_1705082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1705151_1705844_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_009888830.1|1705833_1707075_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
WP_009888831.1|1707080_1708523_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1708512_1710048_+	hypothetical protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1710049_1710298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1710365_1710929_+	scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1710940_1711831_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1711849_1712083_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1712092_1712494_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1712487_1712835_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1712834_1713125_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1713234_1714041_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1714389_1714827_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1714819_1714996_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1714996_1716307_+	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1716323_1716794_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1716852_1717680_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1717751_1718192_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_011861033.1|1718191_1718386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429855.1|1718532_1718694_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1720030_1720219_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1720337_1721204_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888846.1|1721256_1721391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888847.1|1722068_1722596_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1722733_1723501_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1723566_1725939_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1725955_1726645_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1726637_1728530_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1728543_1728804_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1728808_1729228_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1729228_1730278_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1730270_1730888_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1730899_1731925_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1731941_1733468_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1733482_1733776_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1733775_1733958_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1733991_1734558_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1734588_1734879_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1734882_1735140_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1735400_1736264_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1736342_1737155_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1737248_1739648_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1739688_1739874_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 6
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	3845406	3859238	4119932	transposase,portal	Clostridioides_phage(83.33%)	17	NA	NA
WP_009888243.1|3845406_3846546_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3846878_3847454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3847464_3847653_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3847847_3848405_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3848704_3849448_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_021396478.1|3849643_3849862_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	94.4	6.8e-37
WP_012816431.1|3849901_3850444_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888248.1|3850538_3851744_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
WP_009888251.1|3852272_3852716_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888252.1|3852933_3853377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888253.1|3853398_3853716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816432.1|3853905_3854568_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888255.1|3854599_3855142_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_009888256.1|3855381_3855564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888257.1|3855591_3856203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816433.1|3856679_3857894_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_003437815.1|3858080_3859238_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 7
NZ_CP026595	Clostridioides difficile strain 12-00011 chromosome, complete genome	4119932	4030963	4046386	4119932		Streptococcus_phage(92.31%)	20	NA	NA
WP_009892195.1|4030963_4031287_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|4031301_4031685_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|4031780_4032194_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|4032300_4032759_+	glyoxalase	NA	NA	NA	NA	NA
WP_009892206.1|4032783_4033326_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009892207.1|4033382_4033889_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|4033998_4035393_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|4035672_4036794_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|4036800_4036935_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|4036935_4037157_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|4037476_4038115_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|4038191_4038380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|4038400_4038898_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|4038913_4039417_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_153300386.1|4039379_4039520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892227.1|4039529_4039919_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|4039905_4042338_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4042337_4044473_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4044469_4045477_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4045492_4046386_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
