The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	285646	301832	4119604		Synechococcus_phage(23.08%)	14	NA	NA
WP_009888043.1|285646_286159_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	2.3e-83
WP_003425290.1|286608_287085_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287090_287789_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|287800_289168_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_003425286.1|289161_290238_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	1.7e-64
WP_003436064.1|290231_290825_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_009892582.1|290817_292350_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
WP_009888045.1|292360_293611_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_009888046.1|293635_297442_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	24.1	3.0e-31
WP_009888047.1|297647_298520_+	dTDP-4-dehydrorhamnose reductase	NA	H9NCE8	Sphingomonas_phage	30.0	3.8e-14
WP_009888048.1|298628_299510_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	61.9	8.2e-97
WP_009888049.1|299546_300104_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.0	1.3e-47
WP_009888050.1|300141_301125_+	dTDP-glucose 4,6-dehydratase	NA	A0A291LAD7	Escherichia_phage	47.9	9.2e-81
WP_009888051.1|301163_301832_+	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	47.7	4.1e-24
>prophage 2
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	588705	659419	4119604	transposase,tRNA,protease,coat	Streptococcus_phage(33.33%)	55	NA	NA
WP_003425122.1|588705_589422_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003436985.1|589500_590811_+	methylase	NA	NA	NA	NA	NA
WP_003425127.1|590910_591447_+	signal peptidase I	NA	NA	NA	NA	NA
WP_003425129.1|591612_592149_+	signal peptidase I	NA	NA	NA	NA	NA
WP_009888346.1|592158_592914_+	TIM barrel protein	NA	NA	NA	NA	NA
WP_009888347.1|592987_594655_+	nucleoside kinase	NA	NA	NA	NA	NA
WP_003417962.1|595235_596165_+	glutaminase A	NA	NA	NA	NA	NA
WP_003417965.1|596262_596826_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888348.1|597313_598150_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.5	2.1e-30
WP_009888349.1|598401_599397_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_009888350.1|599653_600058_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_009888351.1|601057_601972_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_009888352.1|602077_604315_+	ATP-binding protein	NA	A0A2H4UU76	Bodo_saltans_virus	32.7	9.9e-06
WP_025984766.1|604946_605564_+	endonuclease III	NA	NA	NA	NA	NA
WP_003429657.1|605757_606228_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_009888355.1|606263_607112_+	DegV family protein	NA	NA	NA	NA	NA
WP_009892666.1|607467_608472_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009888358.1|608596_609709_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003439005.1|610131_610893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003417993.1|610895_611714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003439009.1|611893_612496_+	DUF445 family protein	NA	NA	NA	NA	NA
WP_009888359.1|613358_615278_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	39.9	1.3e-144
WP_100882489.1|616707_616857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816012.1|617213_618332_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.2	2.2e-110
WP_009888362.1|619329_620367_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_009888364.1|620359_621046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888365.1|621057_621378_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009888366.1|621738_623079_+	sensor histidine kinase	NA	X5JAC0	Clostridium_phage	38.8	2.4e-79
WP_009888368.1|623756_624326_-	hydrolase	NA	NA	NA	NA	NA
WP_009888369.1|624486_625737_-	MFS transporter	NA	NA	NA	NA	NA
WP_074014400.1|626028_626616_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888371.1|626937_628398_+	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003429639.1|628771_629377_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009888372.1|629379_631947_+	pyruvate, phosphate dikinase	NA	A0A1V0SGR7	Hokovirus	39.6	4.1e-48
WP_003437599.1|631939_632104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888376.1|633212_633488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429630.1|633507_633795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892676.1|635349_636459_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.8	3.1e-109
WP_009888381.1|636523_638647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888382.1|638661_643872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888383.1|644096_646196_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.8	2.2e-68
WP_009892678.1|646238_646634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438914.1|647694_647883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888386.1|648067_648508_-	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009888387.1|648843_650157_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	41.0	1.6e-93
WP_009888388.1|650174_650711_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	70.3	4.2e-64
WP_009888389.1|651229_651451_+|coat	spore coat associated protein CotJA	coat	NA	NA	NA	NA
WP_009888390.1|651450_651714_+|coat	spore coat protein CotJB	coat	NA	NA	NA	NA
WP_003418062.1|651775_652348_+	manganese catalase family protein	NA	NA	NA	NA	NA
WP_009888391.1|653165_653699_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	50.0	7.0e-35
WP_009888392.1|653923_654103_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012816016.1|654709_654958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888395.1|655805_656219_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009888396.1|656293_656803_+	GrpB family protein	NA	NA	NA	NA	NA
WP_009888399.1|658309_659419_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	54.3	6.6e-112
>prophage 3
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	1402883	1465782	4119604	tRNA,tail,protease,plate,portal,integrase	Clostridium_phage(46.15%)	61	1408041:1408057	1469211:1469227
WP_003428224.1|1402883_1403618_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_009889104.1|1403740_1406152_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_009889105.1|1406154_1407213_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_009892976.1|1407206_1408541_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
1408041:1408057	attL	AAAGAAGATATATTAAA	NA	NA	NA	NA
WP_009889106.1|1408527_1409070_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1409357_1410404_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1410579_1412121_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_003438344.1|1412755_1414537_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_009889108.1|1414618_1415149_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009889109.1|1415188_1416013_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1416269_1417178_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_009889111.1|1417321_1418767_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1419077_1419530_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009889112.1|1419942_1421520_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1421678_1422431_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1422569_1423910_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1424021_1425218_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_009889113.1|1425602_1426553_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1426713_1427466_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_009889114.1|1427557_1428334_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1428648_1430547_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003428201.1|1430674_1431796_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1431994_1432327_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012816112.1|1432313_1433372_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_009889118.1|1433364_1434435_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1434536_1435073_+	lipoprotein	NA	NA	NA	NA	NA
WP_009889121.1|1435189_1435897_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.0	3.6e-55
WP_009889122.1|1435898_1436615_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_009889124.1|1436616_1437375_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_009889126.1|1437518_1438907_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1438982_1439804_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009892989.1|1440054_1441209_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1441391_1441592_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1442012_1442441_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1442583_1443339_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_009889132.1|1443459_1443876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003428186.1|1444039_1444546_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	67.1	4.0e-56
WP_003428185.1|1444627_1444948_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_003419641.1|1445116_1445314_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_009889133.1|1445418_1445859_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	4.6e-32
WP_009889135.1|1446107_1446551_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	36.7	7.6e-19
WP_009889137.1|1446555_1447620_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	52.8	2.6e-97
WP_003419646.1|1447633_1448062_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009889139.1|1448175_1448622_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003419648.1|1448648_1448816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889141.1|1448815_1451269_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	61.0	6.1e-17
WP_009889143.1|1451268_1451691_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	70.4	2.2e-52
WP_009889145.1|1451972_1453502_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1453517_1453844_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003428161.1|1453843_1454272_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	5.8e-64
WP_009889148.1|1454264_1455317_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.3	9.3e-140
WP_009889149.1|1455313_1456012_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	3.3e-48
WP_009889153.1|1456012_1456999_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_009892995.1|1457020_1462198_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	28.3	8.2e-88
WP_009889155.1|1462214_1462568_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	4.2e-12
WP_003419670.1|1462830_1463091_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1463315_1463771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1463998_1464418_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1464716_1464926_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_003428145.1|1464945_1465167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009889162.1|1465383_1465782_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1469211:1469227	attR	TTTAATATATCTTCTTT	NA	NA	NA	NA
>prophage 4
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	1548474	1557019	4119604		Pandoravirus(33.33%)	10	NA	NA
WP_009889249.1|1548474_1549059_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	52.6	4.2e-57
WP_074014342.1|1549051_1550410_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	3.0e-37
WP_003438634.1|1550399_1551143_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_009889253.1|1551176_1551878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1551903_1552476_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_012816129.1|1552529_1553333_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	28.6	2.4e-23
WP_009889257.1|1553343_1553709_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_009889259.1|1553701_1554208_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_009893063.1|1554188_1554974_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.0e-13
WP_009893065.1|1555228_1557019_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.8	5.6e-52
>prophage 5
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	1684433	1739564	4119604	terminase,tail,holin,plate,portal,integrase	Clostridium_phage(78.57%)	68	1678436:1678451	1687656:1687671
1678436:1678451	attL	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_003429803.1|1684433_1685564_-|integrase	site-specific integrase	integrase	A0A0A8WIE1	Clostridium_phage	99.7	2.9e-216
WP_009888800.1|1685642_1686350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888801.1|1686362_1687232_-	protein kinase	NA	NA	NA	NA	NA
WP_003429804.1|1687851_1688358_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A8WEK1	Clostridium_phage	100.0	1.5e-87
1687656:1687671	attR	ATATAAAAGAGCAGAT	NA	NA	NA	NA
WP_009893126.1|1688433_1688982_-	helix-turn-helix domain-containing protein	NA	A0A0A8WJ60	Clostridium_phage	98.4	2.2e-92
WP_009888806.1|1688993_1689335_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	100.0	7.6e-59
WP_009893129.1|1689511_1689715_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHR3	Clostridium_phage	100.0	3.7e-29
WP_009888810.1|1689762_1690572_+	phage antirepressor	NA	A0A0A8WIE3	Clostridium_phage	97.4	1.0e-146
WP_009888812.1|1690618_1690828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003433505.1|1690837_1691212_-	hypothetical protein	NA	A0A1L5C299	Pseudoalteromonas_phage	37.1	2.2e-11
WP_009888813.1|1691287_1691485_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WE47	Clostridium_phage	92.3	2.9e-26
WP_009888815.1|1691515_1691908_+	helix-turn-helix domain-containing protein	NA	A0A0A8WHS2	Clostridium_phage	93.0	9.6e-58
WP_003429817.1|1691888_1692038_+	hypothetical protein	NA	A0A0A8WIF8	Clostridium_phage	89.4	4.2e-14
WP_003433513.1|1692108_1692546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888818.1|1692557_1693724_+	DUF2800 domain-containing protein	NA	S5MUB5	Brevibacillus_phage	55.9	1.5e-117
WP_009888819.1|1693738_1694074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429822.1|1694126_1694699_+	DNA-directed RNA polymerase sigma-70 factor	NA	NA	NA	NA	NA
WP_003433516.1|1694721_1695294_+	DUF2815 family protein	NA	S5MC21	Brevibacillus_phage	66.7	8.5e-63
WP_009888821.1|1695293_1697252_+	DNA polymerase	NA	A0A0A7RTL3	Clostridium_phage	69.1	7.8e-265
WP_009888822.1|1697263_1699681_+	virulence-associated protein E	NA	A0A0A7RTG3	Clostridium_phage	67.7	0.0e+00
WP_003433522.1|1699962_1700289_+	VRR-NUC domain-containing protein	NA	A0A2K5B272	Erysipelothrix_phage	55.4	8.7e-20
WP_009888823.1|1700237_1701608_+	DEAD/DEAH box helicase	NA	A0A1S7FYY5	Listeria_phage	60.0	8.4e-157
WP_009888825.1|1701761_1702241_+	hypothetical protein	NA	I2E8Y5	Clostridium_phage	51.0	4.4e-36
WP_009888827.1|1703267_1704242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429834.1|1704262_1704772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888829.1|1704841_1705534_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	97.0	7.0e-120
WP_009888830.1|1705523_1706765_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	98.3	1.1e-243
WP_009888831.1|1706770_1708213_+|portal	phage portal protein	portal	A0A0A8WIH2	Clostridium_phage	97.7	3.0e-274
WP_009893134.1|1708202_1709738_+	hypothetical protein	NA	X5JAI9	Clostridium_phage	71.9	2.5e-194
WP_009888832.1|1709739_1709988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888833.1|1710055_1710619_+	scaffold protein	NA	A0A0A8WFU8	Clostridium_phage	93.6	6.0e-85
WP_009888834.1|1710630_1711521_+	hypothetical protein	NA	X5J9Z5	Clostridium_phage	99.3	1.4e-165
WP_009888835.1|1711539_1711773_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	93.5	4.6e-31
WP_009888836.1|1711782_1712184_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003433540.1|1712177_1712525_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	99.1	1.1e-57
WP_009893135.1|1712524_1712815_+	HK97 gp10 family phage protein	NA	A0A0A8WFV8	Clostridium_phage	96.7	4.1e-45
WP_009888838.1|1712924_1713731_+	hypothetical protein	NA	F8UBL7	Clostridium_phage	48.0	2.4e-47
WP_009888839.1|1714079_1714517_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.2	3.3e-75
WP_009888840.1|1714509_1714686_+	hypothetical protein	NA	X5J9Z6	Clostridium_phage	93.1	1.1e-21
WP_009893136.1|1714686_1715997_+	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.7	8.1e-234
WP_009888842.1|1716013_1716484_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	81.3	1.3e-69
WP_009888843.1|1716542_1717370_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	48.3	1.8e-45
WP_003429853.1|1717441_1717882_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_011861033.1|1717881_1718076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429855.1|1718222_1718384_+	hypothetical protein	NA	A0A0A8WE04	Clostridium_phage	84.3	1.2e-14
WP_003429858.1|1719720_1719909_+	hypothetical protein	NA	X5JAJ2	Clostridium_phage	96.8	2.2e-23
WP_009888845.1|1720027_1720894_+	hypothetical protein	NA	X5JAW1	Clostridium_phage	80.1	3.2e-130
WP_009888846.1|1720946_1721081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888847.1|1721758_1722286_+	DUF4352 domain-containing protein	NA	A0A0A8WJ63	Clostridium_phage	97.1	8.7e-62
WP_009888848.1|1722423_1723191_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	44.4	6.3e-45
WP_009893138.1|1723256_1725629_+	tape measure protein	NA	X5JAB7	Clostridium_phage	41.5	8.8e-146
WP_009888849.1|1725645_1726335_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	94.8	2.0e-119
WP_009893140.1|1726327_1728220_+	cell wall hydrolase	NA	A3QSB3	Clostridium_virus	94.8	0.0e+00
WP_009893142.1|1728233_1728494_+	DUF2577 domain-containing protein	NA	A0A0A8WJ65	Clostridium_phage	86.0	1.4e-33
WP_009888851.1|1728498_1728918_+	DUF2634 domain-containing protein	NA	A0A0A8WJV8	Clostridium_phage	95.7	1.3e-71
WP_009888852.1|1728918_1729968_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	94.8	1.0e-186
WP_003433579.1|1729960_1730578_+	YmfQ family protein	NA	A0A0A8WII4	Clostridium_phage	98.0	8.8e-114
WP_009888853.1|1730589_1731615_+|tail	phage tail protein	tail	A3QSB7	Clostridium_virus	87.8	9.1e-140
WP_009893144.1|1731631_1733158_+	hypothetical protein	NA	B6SBV0	Clostridium_virus	60.8	1.3e-89
WP_009889429.1|1733172_1733466_+	hypothetical protein	NA	E2ELK3	Clostridium_phage	77.9	2.2e-38
WP_009889431.1|1733465_1733648_+	hypothetical protein	NA	A3QSC3	Clostridium_virus	95.0	5.5e-24
WP_009889434.1|1733681_1734248_+	hypothetical protein	NA	A0A0A8WFF2	Clostridium_phage	77.8	3.6e-37
WP_009889435.1|1734278_1734569_+	hypothetical protein	NA	A0A0A8WIF5	Clostridium_phage	95.8	6.9e-45
WP_009889440.1|1734572_1734830_+|holin	holin	holin	A3QSC5	Clostridium_virus	100.0	1.1e-41
WP_003429958.1|1735090_1735954_+	Abi family protein	NA	A3QSC6	Clostridium_virus	99.7	8.4e-163
WP_009889444.1|1736032_1736845_+	N-acetylmuramoyl-L-alanine amidase	NA	X5JAJ5	Clostridium_phage	97.4	9.7e-153
WP_009893147.1|1736938_1739338_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_003433687.1|1739378_1739564_-	hypothetical protein	NA	A0A0A8WHQ4	Clostridium_phage	62.1	7.6e-13
>prophage 6
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	3845077	3858909	4119604	transposase,portal	Clostridioides_phage(83.33%)	17	NA	NA
WP_009888243.1|3845077_3846217_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	91.8	4.9e-195
WP_009888245.1|3846549_3847125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009888246.1|3847135_3847324_+	hypothetical protein	NA	A0A1V0E014	Clostridioides_phage	96.8	5.3e-22
WP_009888247.1|3847518_3848076_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	97.8	4.1e-94
WP_012816430.1|3848375_3849119_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	92.3	4.3e-131
WP_021396478.1|3849314_3849533_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	94.4	6.8e-37
WP_012816431.1|3849572_3850115_+	hypothetical protein	NA	A0A1V0DZW7	Clostridioides_phage	95.0	8.3e-92
WP_009888248.1|3850209_3851415_+|portal	phage portal protein	portal	A0A1V0DZW8	Clostridioides_phage	95.0	2.0e-210
WP_009888251.1|3851943_3852387_-	hypothetical protein	NA	A0A1V0DZZ2	Clostridioides_phage	82.6	4.3e-62
WP_009888252.1|3852604_3853048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888253.1|3853069_3853387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816432.1|3853576_3854239_-	DUF4367 domain-containing protein	NA	A0A1V0DZZ4	Clostridioides_phage	76.2	4.4e-87
WP_009888255.1|3854270_3854813_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1V0DZZ1	Clostridioides_phage	96.7	3.8e-89
WP_009888256.1|3855052_3855235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009888257.1|3855262_3855874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012816433.1|3856350_3857565_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.8	7.9e-50
WP_003437815.1|3857751_3858909_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.5	8.4e-17
>prophage 7
NZ_CP026593	Clostridioides difficile strain 12-00008 chromosome, complete genome	4119604	4030634	4046057	4119604		Streptococcus_phage(92.31%)	20	NA	NA
WP_009892195.1|4030634_4030958_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	73.5	1.7e-39
WP_009892197.1|4030972_4031356_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	6.3e-38
WP_009892199.1|4031451_4031865_+	DUF3788 domain-containing protein	NA	NA	NA	NA	NA
WP_009892201.1|4031971_4032430_+	glyoxalase	NA	NA	NA	NA	NA
WP_009892206.1|4032454_4032997_+	DUF3795 domain-containing protein	NA	NA	NA	NA	NA
WP_009892207.1|4033053_4033560_+	YcxB family protein	NA	NA	NA	NA	NA
WP_012816450.1|4033669_4035064_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.8	1.3e-178
WP_009892210.1|4035343_4036465_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	62.7	1.3e-134
WP_009892216.1|4036471_4036606_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_006354966.1|4036606_4036828_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_009892220.1|4037147_4037786_+	chloramphenicol acetyltransferase CAT	NA	G3CFL0	Escherichia_phage	35.3	7.6e-36
WP_009892222.1|4037862_4038051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892224.1|4038071_4038569_+	conjugal transfer protein	NA	A0A1S5SF25	Streptococcus_phage	41.2	1.3e-27
WP_009892226.1|4038584_4039088_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	47.6	4.4e-39
WP_153300386.1|4039050_4039191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009892227.1|4039200_4039590_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.8	8.1e-49
WP_009892228.1|4039576_4042009_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_009892229.1|4042008_4044144_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	58.6	1.3e-177
WP_009892230.1|4044140_4045148_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	67.3	6.4e-130
WP_009892232.1|4045163_4046057_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	53.0	1.6e-79
