assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	1	150208-150286	1	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|40aa|down_2|NZ_CP026591.1_164822_164942_+,NA|226aa|down_5|NZ_CP026591.1_167122_167800_+	NA|278aa|up_9|NZ_CP026591.1_127578_128412_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP026591.1_128399_129266_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP026591.1_129259_130063_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP026591.1_130094_130826_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP026591.1_130945_131377_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP026591.1_131405_131798_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|NZ_CP026591.1_132304_133009_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP026591.1_145257_146442_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP026591.1_146814_149166_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP026591.1_149187_149727_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP026591.1_162808_163648_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP026591.1_163644_164826_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|40aa|down_2|NZ_CP026591.1_164822_164942_+	NA	NA|301aa|down_3|NZ_CP026591.1_165129_166032_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_4|NZ_CP026591.1_166053_167133_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_5|NZ_CP026591.1_167122_167800_+	NA	NA|72aa|down_6|NZ_CP026591.1_167842_168058_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_7|NZ_CP026591.1_168086_169166_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_8|NZ_CP026591.1_169165_169918_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_9|NZ_CP026591.1_169918_170476_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	2	727731-727873	2	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTAATGAAGATGGTATTATGCA	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|397aa|up_9|NZ_CP026591.1_709057_710248_+,NA|43aa|up_8|NZ_CP026591.1_711150_711279_-,NA|44aa|down_1|NZ_CP026591.1_728829_728961_+,NA|61aa|down_2|NZ_CP026591.1_729049_729232_+,NA|101aa|down_7|NZ_CP026591.1_739955_740258_-	NA|397aa|up_9|NZ_CP026591.1_709057_710248_+	NA	NA|43aa|up_8|NZ_CP026591.1_711150_711279_-	NA	NA|125aa|up_7|NZ_CP026591.1_711381_711756_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|286aa|up_6|NZ_CP026591.1_711757_712615_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|213aa|up_5|NZ_CP026591.1_712617_713256_+	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|245aa|up_4|NZ_CP026591.1_714229_714964_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|407aa|up_3|NZ_CP026591.1_716141_717362_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|398aa|up_2|NZ_CP026591.1_717424_718618_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|127aa|up_1|NZ_CP026591.1_718824_719205_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|185aa|up_0|NZ_CP026591.1_720113_720668_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|167aa|down_0|NZ_CP026591.1_728220_728721_+	TIGR01593, Uncharacterized_protein_CPE0383, toxin secretion/phage lysis holin	NA|44aa|down_1|NZ_CP026591.1_728829_728961_+	NA	NA|61aa|down_2|NZ_CP026591.1_729049_729232_+	NA	NA|2711aa|down_3|NZ_CP026591.1_729448_737581_+	pfam12920, TcdA_TcdB_pore, TcdA/TcdB pore forming domain	NA|187aa|down_4|NZ_CP026591.1_737915_738476_-	pfam12569, NARP1, NMDA receptor-regulated protein 1	NA|82aa|down_5|NZ_CP026591.1_739012_739258_+	pfam11731, Cdd1, Pathogenicity locus	NA|90aa|down_6|NZ_CP026591.1_739474_739744_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|101aa|down_7|NZ_CP026591.1_739955_740258_-	NA	NA|246aa|down_8|NZ_CP026591.1_740777_741515_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|down_9|NZ_CP026591.1_741526_742288_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	3	1007170-1007247	3	CRISPRCasFinder	no	cas14j	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AAAAAATAAGAAAGTTTATAAATA	24	0	0	NA	NA	NA	1	1	TypeV	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|50aa|down_8|NZ_CP026591.1_1015944_1016094_-	NA|527aa|up_9|NZ_CP026591.1_991809_993390_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	cas14j|373aa|up_8|NZ_CP026591.1_994135_995254_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|up_7|NZ_CP026591.1_995537_995984_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|348aa|up_6|NZ_CP026591.1_996004_997048_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|387aa|up_5|NZ_CP026591.1_997818_998979_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|up_4|NZ_CP026591.1_998980_1000111_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|up_3|NZ_CP026591.1_1000139_1001582_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|814aa|up_2|NZ_CP026591.1_1001574_1004016_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|up_1|NZ_CP026591.1_1004020_1005886_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|up_0|NZ_CP026591.1_1006130_1006784_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|492aa|down_0|NZ_CP026591.1_1007421_1008897_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_1|NZ_CP026591.1_1008983_1009397_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_2|NZ_CP026591.1_1009426_1010278_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_3|NZ_CP026591.1_1010267_1011146_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins	NA|67aa|down_4|NZ_CP026591.1_1011325_1011526_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|497aa|down_5|NZ_CP026591.1_1011992_1013483_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|499aa|down_6|NZ_CP026591.1_1013740_1015237_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|117aa|down_7|NZ_CP026591.1_1015370_1015721_+	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|50aa|down_8|NZ_CP026591.1_1015944_1016094_-	NA	cas14j|373aa|down_9|NZ_CP026591.1_1016359_1017478_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	4	1302361-1303318	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,14	14	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|75aa|up_2|NZ_CP026591.1_1299721_1299946_+,NA|52aa|down_0|NZ_CP026591.1_1304534_1304690_+,NA|34aa|down_1|NZ_CP026591.1_1304714_1304816_+,NA|84aa|down_2|NZ_CP026591.1_1304935_1305187_+,NA|38aa|down_3|NZ_CP026591.1_1305496_1305610_+,NA|128aa|down_4|NZ_CP026591.1_1306395_1306779_-,NA|115aa|down_5|NZ_CP026591.1_1306905_1307250_+,NA|72aa|down_6|NZ_CP026591.1_1307432_1307648_+,NA|40aa|down_7|NZ_CP026591.1_1308453_1308573_-,NA|106aa|down_8|NZ_CP026591.1_1308633_1308951_-,NA|190aa|down_9|NZ_CP026591.1_1309242_1309812_-	NA|360aa|up_9|NZ_CP026591.1_1290198_1291278_+	pfam02618, YceG, YceG-like family	NA|225aa|up_8|NZ_CP026591.1_1291449_1292124_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_7|NZ_CP026591.1_1292110_1293358_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_6|NZ_CP026591.1_1293429_1295094_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|506aa|up_5|NZ_CP026591.1_1295497_1297015_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_4|NZ_CP026591.1_1297139_1297961_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_3|NZ_CP026591.1_1298151_1299579_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|75aa|up_2|NZ_CP026591.1_1299721_1299946_+	NA	NA|224aa|up_1|NZ_CP026591.1_1299888_1300560_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|300aa|up_0|NZ_CP026591.1_1300553_1301453_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|52aa|down_0|NZ_CP026591.1_1304534_1304690_+	NA	NA|34aa|down_1|NZ_CP026591.1_1304714_1304816_+	NA	NA|84aa|down_2|NZ_CP026591.1_1304935_1305187_+	NA	NA|38aa|down_3|NZ_CP026591.1_1305496_1305610_+	NA	NA|128aa|down_4|NZ_CP026591.1_1306395_1306779_-	NA	NA|115aa|down_5|NZ_CP026591.1_1306905_1307250_+	NA	NA|72aa|down_6|NZ_CP026591.1_1307432_1307648_+	NA	NA|40aa|down_7|NZ_CP026591.1_1308453_1308573_-	NA	NA|106aa|down_8|NZ_CP026591.1_1308633_1308951_-	NA	NA|190aa|down_9|NZ_CP026591.1_1309242_1309812_-	NA
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	5	1511707-1512459	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	10,11,10	11	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_4|NZ_CP026591.1_1506352_1506901_-,NA|80aa|down_4|NZ_CP026591.1_1519591_1519831_+,NA|59aa|down_5|NZ_CP026591.1_1520018_1520195_-,NA|45aa|down_9|NZ_CP026591.1_1522821_1522956_+	NA|260aa|up_9|NZ_CP026591.1_1500669_1501449_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|NZ_CP026591.1_1501552_1502137_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|NZ_CP026591.1_1502336_1503767_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|NZ_CP026591.1_1504082_1505027_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_5|NZ_CP026591.1_1505297_1506233_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_4|NZ_CP026591.1_1506352_1506901_-	NA	NA|143aa|up_3|NZ_CP026591.1_1507052_1507481_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_2|NZ_CP026591.1_1507547_1508216_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|NZ_CP026591.1_1508333_1509689_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|119aa|up_0|NZ_CP026591.1_1510819_1511176_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|578aa|down_0|NZ_CP026591.1_1512784_1514518_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_CP026591.1_1514757_1515603_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP026591.1_1515633_1517868_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP026591.1_1518637_1519447_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP026591.1_1519591_1519831_+	NA	NA|59aa|down_5|NZ_CP026591.1_1520018_1520195_-	NA	NA|225aa|down_6|NZ_CP026591.1_1520699_1521374_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NZ_CP026591.1_1521593_1522148_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NZ_CP026591.1_1522225_1522591_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|NZ_CP026591.1_1522821_1522956_+	NA
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	6	1623078-1623371	3,6,3	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	3,4,4	4	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NZ_CP026591.1_1611902_1612052_+,NA|190aa|up_7|NZ_CP026591.1_1612966_1613536_+,NA|61aa|up_4|NZ_CP026591.1_1616485_1616668_-,NA|91aa|down_0|NZ_CP026591.1_1623538_1623811_-,NA|323aa|down_5|NZ_CP026591.1_1628293_1629262_+	NA|50aa|up_9|NZ_CP026591.1_1611902_1612052_+	NA	NA|300aa|up_8|NZ_CP026591.1_1612062_1612962_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP026591.1_1612966_1613536_+	NA	NA|216aa|up_6|NZ_CP026591.1_1613702_1614350_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP026591.1_1614739_1615654_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP026591.1_1616485_1616668_-	NA	NA|283aa|up_3|NZ_CP026591.1_1617078_1617927_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP026591.1_1617945_1618773_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP026591.1_1618747_1619671_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP026591.1_1620323_1622417_+	cd01948, EAL, EAL domain	NA|91aa|down_0|NZ_CP026591.1_1623538_1623811_-	NA	NA|273aa|down_1|NZ_CP026591.1_1624029_1624848_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_CP026591.1_1624980_1627101_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_CP026591.1_1627126_1627354_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_CP026591.1_1627680_1628121_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|NZ_CP026591.1_1628293_1629262_+	NA	NA|403aa|down_6|NZ_CP026591.1_1629737_1630946_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_CP026591.1_1631006_1631888_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|NZ_CP026591.1_1632303_1633218_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_CP026591.1_1633440_1633986_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	7	1715755-1716111	4,7,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,5,5	5	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|269aa|up_8|NZ_CP026591.1_1709553_1710360_+,NA|146aa|up_7|NZ_CP026591.1_1710708_1711146_+,NA|59aa|up_6|NZ_CP026591.1_1711138_1711315_+,NA|276aa|up_3|NZ_CP026591.1_1713171_1713999_+,NA|54aa|up_0|NZ_CP026591.1_1714851_1715013_+,NA|63aa|down_0|NZ_CP026591.1_1716349_1716538_+,NA|45aa|down_2|NZ_CP026591.1_1717575_1717710_+	NA|97aa|up_9|NZ_CP026591.1_1709153_1709444_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|269aa|up_8|NZ_CP026591.1_1709553_1710360_+	NA	NA|146aa|up_7|NZ_CP026591.1_1710708_1711146_+	NA	NA|59aa|up_6|NZ_CP026591.1_1711138_1711315_+	NA	NA|437aa|up_5|NZ_CP026591.1_1711315_1712626_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_4|NZ_CP026591.1_1712642_1713113_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_3|NZ_CP026591.1_1713171_1713999_+	NA	NA|147aa|up_2|NZ_CP026591.1_1714070_1714511_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_1|NZ_CP026591.1_1714510_1714705_+	TIGR02247, Hypothetical_protein_K09H11	NA|54aa|up_0|NZ_CP026591.1_1714851_1715013_+	NA	NA|63aa|down_0|NZ_CP026591.1_1716349_1716538_+	NA	NA|289aa|down_1|NZ_CP026591.1_1716656_1717523_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|45aa|down_2|NZ_CP026591.1_1717575_1717710_+	NA	NA|176aa|down_3|NZ_CP026591.1_1718387_1718915_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_4|NZ_CP026591.1_1719052_1719820_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_5|NZ_CP026591.1_1719885_1722258_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_6|NZ_CP026591.1_1722274_1722964_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_7|NZ_CP026591.1_1722956_1724849_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_8|NZ_CP026591.1_1724862_1725123_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_9|NZ_CP026591.1_1725127_1725547_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	8	1717976-1718266	8	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATATGGAATGTAAATC	30	0	0	NA	NA	I-A	4	4	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|59aa|up_9|NZ_CP026591.1_1711138_1711315_+,NA|276aa|up_6|NZ_CP026591.1_1713171_1713999_+,NA|54aa|up_3|NZ_CP026591.1_1714851_1715013_+,NA|63aa|up_2|NZ_CP026591.1_1716349_1716538_+,NA|45aa|up_0|NZ_CP026591.1_1717575_1717710_+,NA	NA|59aa|up_9|NZ_CP026591.1_1711138_1711315_+	NA	NA|437aa|up_8|NZ_CP026591.1_1711315_1712626_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_7|NZ_CP026591.1_1712642_1713113_+	pfam09393, DUF2001, Phage tail tube protein	NA|276aa|up_6|NZ_CP026591.1_1713171_1713999_+	NA	NA|147aa|up_5|NZ_CP026591.1_1714070_1714511_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_4|NZ_CP026591.1_1714510_1714705_+	TIGR02247, Hypothetical_protein_K09H11	NA|54aa|up_3|NZ_CP026591.1_1714851_1715013_+	NA	NA|63aa|up_2|NZ_CP026591.1_1716349_1716538_+	NA	NA|289aa|up_1|NZ_CP026591.1_1716656_1717523_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|45aa|up_0|NZ_CP026591.1_1717575_1717710_+	NA	NA|176aa|down_0|NZ_CP026591.1_1718387_1718915_+	pfam11611, DUF4352, Domain of unknown function (DUF4352)	NA|256aa|down_1|NZ_CP026591.1_1719052_1719820_+	pfam14471, DUF4428, Domain of unknown function (DUF4428)	NA|791aa|down_2|NZ_CP026591.1_1719885_1722258_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NZ_CP026591.1_1722274_1722964_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_4|NZ_CP026591.1_1722956_1724849_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NZ_CP026591.1_1724862_1725123_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NZ_CP026591.1_1725127_1725547_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NZ_CP026591.1_1725547_1726597_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NZ_CP026591.1_1726589_1727207_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_9|NZ_CP026591.1_1727218_1728244_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	9	1855544-1856498	5,9,5	PILER-CR,CRISPRCasFinder,CRT	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,14	14	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|80aa|up_0|NZ_CP026591.1_1855108_1855348_+,NA|96aa|down_0|NZ_CP026591.1_1856906_1857194_+,NA|59aa|down_5|NZ_CP026591.1_1863581_1863758_-,NA|341aa|down_6|NZ_CP026591.1_1864332_1865355_+,NA|258aa|down_8|NZ_CP026591.1_1866261_1867035_+	NA|266aa|up_9|NZ_CP026591.1_1839070_1839868_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|NZ_CP026591.1_1840177_1841164_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|NZ_CP026591.1_1841647_1843378_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|825aa|up_6|NZ_CP026591.1_1844778_1847253_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_5|NZ_CP026591.1_1847252_1848710_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_4|NZ_CP026591.1_1849132_1851490_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_3|NZ_CP026591.1_1851575_1851893_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|252aa|up_2|NZ_CP026591.1_1852231_1852987_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_1|NZ_CP026591.1_1853625_1854897_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|80aa|up_0|NZ_CP026591.1_1855108_1855348_+	NA	NA|96aa|down_0|NZ_CP026591.1_1856906_1857194_+	NA	NA|184aa|down_1|NZ_CP026591.1_1857731_1858283_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP026591.1_1858473_1859436_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP026591.1_1859730_1861575_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_4|NZ_CP026591.1_1861896_1862481_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NZ_CP026591.1_1863581_1863758_-	NA	NA|341aa|down_6|NZ_CP026591.1_1864332_1865355_+	NA	NA|296aa|down_7|NZ_CP026591.1_1865368_1866256_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NZ_CP026591.1_1866261_1867035_+	NA	NA|242aa|down_9|NZ_CP026591.1_1867146_1867872_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	10	2290756-2291439	6,10,6	CRT,CRISPRCasFinder,PILER-CR	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTACATTCCATATAGTTAATATAAAAC,CTTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAG	28,29,29	0	0	NA	NA	I-A:I-A:I-A	10,9,8	10	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|43aa|up_4|NZ_CP026591.1_2288631_2288760_+,NA|58aa|up_1|NZ_CP026591.1_2290030_2290204_+,NA|98aa|up_0|NZ_CP026591.1_2290360_2290654_-,NA|80aa|down_7|NZ_CP026591.1_2299648_2299888_-,NA|216aa|down_8|NZ_CP026591.1_2300058_2300706_-,NA|567aa|down_9|NZ_CP026591.1_2300845_2302546_-	NA|345aa|up_9|NZ_CP026591.1_2282729_2283764_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|255aa|up_8|NZ_CP026591.1_2284453_2285218_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_7|NZ_CP026591.1_2285520_2285994_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_6|NZ_CP026591.1_2286362_2286920_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_5|NZ_CP026591.1_2287177_2287876_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|43aa|up_4|NZ_CP026591.1_2288631_2288760_+	NA	NA|156aa|up_3|NZ_CP026591.1_2288897_2289365_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_2|NZ_CP026591.1_2289375_2289591_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|58aa|up_1|NZ_CP026591.1_2290030_2290204_+	NA	NA|98aa|up_0|NZ_CP026591.1_2290360_2290654_-	NA	NA|291aa|down_0|NZ_CP026591.1_2292269_2293142_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|NZ_CP026591.1_2293535_2294114_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|NZ_CP026591.1_2294171_2294888_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|NZ_CP026591.1_2295078_2296164_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|NZ_CP026591.1_2296318_2296978_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|NZ_CP026591.1_2297194_2298487_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|NZ_CP026591.1_2298504_2299698_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|80aa|down_7|NZ_CP026591.1_2299648_2299888_-	NA	NA|216aa|down_8|NZ_CP026591.1_2300058_2300706_-	NA	NA|567aa|down_9|NZ_CP026591.1_2300845_2302546_-	NA
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	11	2751390-2751547	7	PILER-CR	no	cas3,cas5,cas7,cas6	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|492aa|down_3|NZ_CP026591.1_2755978_2757454_-,NA|39aa|down_9|NZ_CP026591.1_2763530_2763647_-	NA|448aa|up_9|NZ_CP026591.1_2743846_2745190_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|81aa|up_8|NZ_CP026591.1_2745202_2745445_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP026591.1_2745651_2746215_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP026591.1_2746407_2746905_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP026591.1_2747015_2747459_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP026591.1_2747488_2747668_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP026591.1_2747830_2748181_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP026591.1_2748223_2749522_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP026591.1_2749523_2750282_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP026591.1_2750300_2751248_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP026591.1_2751688_2754097_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|269aa|down_1|NZ_CP026591.1_2754123_2754930_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|NZ_CP026591.1_2754945_2755959_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_CP026591.1_2755978_2757454_-	NA	cas6|246aa|down_4|NZ_CP026591.1_2757458_2758196_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|NZ_CP026591.1_2758454_2759564_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|NZ_CP026591.1_2759593_2760361_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|458aa|down_7|NZ_CP026591.1_2760548_2761922_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|NZ_CP026591.1_2761957_2762893_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|39aa|down_9|NZ_CP026591.1_2763530_2763647_-	NA
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	12	3063441-3063766	11	CRISPRCasFinder	no		csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NZ_CP026591.1_3066630_3066951_-,NA|664aa|down_3|NZ_CP026591.1_3066940_3068932_-,NA|458aa|down_7|NZ_CP026591.1_3079589_3080963_-	NA|218aa|up_9|NZ_CP026591.1_3048458_3049112_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP026591.1_3049615_3050959_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP026591.1_3051105_3052470_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|623aa|up_6|NZ_CP026591.1_3052647_3054516_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP026591.1_3054748_3055966_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP026591.1_3056165_3057029_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP026591.1_3057110_3059033_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP026591.1_3059111_3059960_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP026591.1_3060372_3061254_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|280aa|up_0|NZ_CP026591.1_3061461_3062301_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP026591.1_3064525_3065539_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|292aa|down_1|NZ_CP026591.1_3065563_3066439_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP026591.1_3066630_3066951_-	NA	NA|664aa|down_3|NZ_CP026591.1_3066940_3068932_-	NA	NA|848aa|down_4|NZ_CP026591.1_3069053_3071597_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP026591.1_3072340_3073018_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP026591.1_3078278_3079217_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP026591.1_3079589_3080963_-	NA	NA|441aa|down_8|NZ_CP026591.1_3081149_3082472_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP026591.1_3082464_3083169_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	13	3227584-3227795	12	CRISPRCasFinder	no	cas14j	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	TCTTCTGATGGTGGTACTGGTGGATT	26	0	0	NA	NA	NA	3	3	TypeV	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|459aa|up_8|NZ_CP026591.1_3216751_3218128_+,NA|50aa|up_5|NZ_CP026591.1_3221455_3221605_+,NA	NA|391aa|up_9|NZ_CP026591.1_3215311_3216484_-	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|459aa|up_8|NZ_CP026591.1_3216751_3218128_+	NA	NA|278aa|up_7|NZ_CP026591.1_3218378_3219212_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	cas14j|373aa|up_6|NZ_CP026591.1_3220071_3221190_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|50aa|up_5|NZ_CP026591.1_3221455_3221605_+	NA	NA|365aa|up_4|NZ_CP026591.1_3222042_3223137_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|149aa|up_3|NZ_CP026591.1_3223138_3223585_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|400aa|up_2|NZ_CP026591.1_3223881_3225081_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|321aa|up_1|NZ_CP026591.1_3225250_3226213_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|221aa|up_0|NZ_CP026591.1_3226330_3226993_-	cd20183, M34_PPEP, Pro-Pro endopeptidase (PPEP) and similar proteins; belongs to peptidase family M34	NA|393aa|down_0|NZ_CP026591.1_3230641_3231820_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|62aa|down_1|NZ_CP026591.1_3232191_3232377_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|925aa|down_2|NZ_CP026591.1_3232441_3235216_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|419aa|down_3|NZ_CP026591.1_3235387_3236644_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|501aa|down_4|NZ_CP026591.1_3236715_3238218_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|397aa|down_5|NZ_CP026591.1_3238308_3239499_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|357aa|down_6|NZ_CP026591.1_3239737_3240808_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_7|NZ_CP026591.1_3241110_3241809_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|502aa|down_8|NZ_CP026591.1_3241922_3243428_-	cd16956, HATPase_YehU-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU	NA|424aa|down_9|NZ_CP026591.1_3243795_3245067_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	14	3335018-3336764	13,7,8	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	26,24,23	26	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP026591.1_3327909_3328110_+,NA|260aa|up_1|NZ_CP026591.1_3333293_3334073_+,NA	NA|740aa|up_9|NZ_CP026591.1_3322256_3324476_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP026591.1_3324751_3327406_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP026591.1_3327909_3328110_+	NA	NA|197aa|up_6|NZ_CP026591.1_3328317_3328908_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP026591.1_3328910_3329786_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP026591.1_3329861_3331253_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP026591.1_3331256_3332393_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP026591.1_3332424_3332970_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP026591.1_3333293_3334073_+	NA	NA|143aa|up_0|NZ_CP026591.1_3334528_3334957_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP026591.1_3336947_3337214_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP026591.1_3337216_3338197_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_CP026591.1_3338199_3338718_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP026591.1_3338765_3341087_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP026591.1_3341097_3341799_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP026591.1_3341800_3342715_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP026591.1_3342716_3344594_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP026591.1_3344599_3345337_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP026591.1_3345414_3346332_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP026591.1_3346610_3348527_-	pfam02687, FtsX, FtsX-like permease family
GCF_002945515.1_ASM294551v1	NZ_CP026591	Clostridioides difficile strain CD-17-01474 chromosome, complete genome	15	3582152-3582774	14,8,9	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas3,cas7,cas6,cas5	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC,ATTTATAACTAACTTAGTGTAATTTAAAC	29,29,29	0	0	NA	NA	NA:NA:NA	9,9,8	9	Unclear	csa3,cas14j,WYL,cas3,DEDDh,DinG,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|243aa|up_8|NZ_CP026591.1_3571359_3572088_-,NA|540aa|up_7|NZ_CP026591.1_3572105_3573725_-,NA|76aa|up_5|NZ_CP026591.1_3575306_3575534_+,NA|57aa|up_0|NZ_CP026591.1_3579506_3579677_-,NA|389aa|down_2|NZ_CP026591.1_3586113_3587280_-,NA|91aa|down_6|NZ_CP026591.1_3590563_3590836_-,NA|250aa|down_8|NZ_CP026591.1_3592432_3593182_-,NA|105aa|down_9|NZ_CP026591.1_3593197_3593512_-	NA|1452aa|up_9|NZ_CP026591.1_3567017_3571373_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|243aa|up_8|NZ_CP026591.1_3571359_3572088_-	NA	NA|540aa|up_7|NZ_CP026591.1_3572105_3573725_-	NA	NA|337aa|up_6|NZ_CP026591.1_3573724_3574735_-	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220)	NA|76aa|up_5|NZ_CP026591.1_3575306_3575534_+	NA	NA|130aa|up_4|NZ_CP026591.1_3575635_3576025_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|62aa|up_3|NZ_CP026591.1_3576054_3576240_+	pfam13333, rve_2, Integrase core domain	NA|431aa|up_2|NZ_CP026591.1_3576466_3577759_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|405aa|up_1|NZ_CP026591.1_3577758_3578973_-	pfam08867, FRG, FRG domain	NA|57aa|up_0|NZ_CP026591.1_3579506_3579677_-	NA	cas3|662aa|down_0|NZ_CP026591.1_3583026_3585012_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas7|357aa|down_1|NZ_CP026591.1_3585022_3586093_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	NA|389aa|down_2|NZ_CP026591.1_3586113_3587280_-	NA	cas6|255aa|down_3|NZ_CP026591.1_3587281_3588046_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas5|216aa|down_4|NZ_CP026591.1_3588036_3588684_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	NA|376aa|down_5|NZ_CP026591.1_3589163_3590291_-	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|91aa|down_6|NZ_CP026591.1_3590563_3590836_-	NA	NA|445aa|down_7|NZ_CP026591.1_3591085_3592420_-	TIGR00665, DnaB, replicative DNA helicase	NA|250aa|down_8|NZ_CP026591.1_3592432_3593182_-	NA	NA|105aa|down_9|NZ_CP026591.1_3593197_3593512_-	NA
