assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002906535.1_ASM290653v1	NZ_CP026326	Helicobacter pylori strain 26695-dR chromosome, complete genome	1	350516-350642	1	CRISPRCasFinder	no	cas2	cas3,cas2,cas14j,DEDDh	Unclear	CTCTCTAGCGTTACTGAAGAGATTATTTCAAAAAAAC	37	0	0	NA	NA	NA	1	1	Unclear	cas3,cas2,cas14j,DEDDh	NA|102aa|up_0|NZ_CP026326.1_349824_350130_+,NA|89aa|down_1|NZ_CP026326.1_351075_351342_+,NA|32aa|down_2|NZ_CP026326.1_351353_351449_+,NA|261aa|down_5|NZ_CP026326.1_353264_354047_+	NA|298aa|up_9|NZ_CP026326.1_342269_343163_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NZ_CP026326.1_343159_343702_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NZ_CP026326.1_343634_344573_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NZ_CP026326.1_344569_345352_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NZ_CP026326.1_345600_346593_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NZ_CP026326.1_346617_347424_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NZ_CP026326.1_347420_347654_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|271aa|up_2|NZ_CP026326.1_347653_348466_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NZ_CP026326.1_348462_348867_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NZ_CP026326.1_349824_350130_+	NA	NA|117aa|down_0|NZ_CP026326.1_350737_351088_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|89aa|down_1|NZ_CP026326.1_351075_351342_+	NA	NA|32aa|down_2|NZ_CP026326.1_351353_351449_+	NA	NA|131aa|down_3|NZ_CP026326.1_351641_352034_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|112aa|down_4|NZ_CP026326.1_352809_353145_+	COG4499, COG4499, Predicted membrane protein [Function unknown]	NA|261aa|down_5|NZ_CP026326.1_353264_354047_+	NA	NA|299aa|down_6|NZ_CP026326.1_354040_354937_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_7|NZ_CP026326.1_354936_356487_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_8|NZ_CP026326.1_356495_358112_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_9|NZ_CP026326.1_358372_359041_+	cd03392, PAP2_like_2, PAP2_like_2 proteins
GCF_002906535.1_ASM290653v1	NZ_CP026326	Helicobacter pylori strain 26695-dR chromosome, complete genome	2	556218-556505	1	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	CTTCCTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCATTCTTTTTTCTCTTTTT	63	1	1	556281-556334	NZ_CP026326.1_555951-556004	NA	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA|116aa|up_5|NZ_CP026326.1_547372_547720_+,NA|482aa|up_4|NZ_CP026326.1_548178_549624_+,NA|536aa|down_1|NZ_CP026326.1_561669_563277_-,NA|219aa|down_3|NZ_CP026326.1_564425_565082_+,NA|127aa|down_6|NZ_CP026326.1_567186_567567_-,NA|115aa|down_7|NZ_CP026326.1_567999_568344_-,NA|377aa|down_8|NZ_CP026326.1_568767_569898_+,NA|307aa|down_9|NZ_CP026326.1_569912_570833_+	NA|444aa|up_9|NZ_CP026326.1_543052_544384_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|303aa|up_8|NZ_CP026326.1_544380_545289_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_7|NZ_CP026326.1_545285_546278_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|277aa|up_6|NZ_CP026326.1_546366_547197_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|116aa|up_5|NZ_CP026326.1_547372_547720_+	NA	NA|482aa|up_4|NZ_CP026326.1_548178_549624_+	NA	NA|170aa|up_3|NZ_CP026326.1_549633_550143_+	pfam16494, Na_Ca_ex_C, C-terminal extension of sodium/calcium exchanger domain	NA|749aa|up_2|NZ_CP026326.1_550261_552508_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|331aa|up_1|NZ_CP026326.1_552516_553509_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|200aa|up_0|NZ_CP026326.1_553513_554113_-	pfam09053, CagZ, CagZ	NA|523aa|down_0|NZ_CP026326.1_560048_561617_-	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]	NA|536aa|down_1|NZ_CP026326.1_561669_563277_-	NA	NA|253aa|down_2|NZ_CP026326.1_563281_564040_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|219aa|down_3|NZ_CP026326.1_564425_565082_+	NA	NA|281aa|down_4|NZ_CP026326.1_565117_565960_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|197aa|down_5|NZ_CP026326.1_566170_566761_-	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori	NA|127aa|down_6|NZ_CP026326.1_567186_567567_-	NA	NA|115aa|down_7|NZ_CP026326.1_567999_568344_-	NA	NA|377aa|down_8|NZ_CP026326.1_568767_569898_+	NA	NA|307aa|down_9|NZ_CP026326.1_569912_570833_+	NA
GCF_002906535.1_ASM290653v1	NZ_CP026326	Helicobacter pylori strain 26695-dR chromosome, complete genome	3	980327-980468	2	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	TTCAATCAAGGGACTTATAACTTTAATAGCA	31	0	0	NA	NA	I-B	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA,NA|220aa|down_8|NZ_CP026326.1_993564_994224_+	NA|380aa|up_9|NZ_CP026326.1_961540_962680_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NZ_CP026326.1_962683_964711_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_7|NZ_CP026326.1_965229_966777_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|530aa|up_6|NZ_CP026326.1_966798_968388_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NZ_CP026326.1_969290_970835_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|563aa|up_4|NZ_CP026326.1_971080_972769_-	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|250aa|up_3|NZ_CP026326.1_972768_973518_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|up_2|NZ_CP026326.1_973777_974209_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|231aa|up_1|NZ_CP026326.1_977568_978261_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP026326.1_978404_979403_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NZ_CP026326.1_987124_988234_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP026326.1_988293_988500_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP026326.1_988655_989237_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP026326.1_989233_990379_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NZ_CP026326.1_990317_991298_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP026326.1_991298_991841_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP026326.1_991856_992768_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP026326.1_992764_993568_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP026326.1_993564_994224_+	NA	NA|201aa|down_9|NZ_CP026326.1_994225_994828_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_002906535.1_ASM290653v1	NZ_CP026326	Helicobacter pylori strain 26695-dR chromosome, complete genome	4	1166604-1166692	2	CRISPRCasFinder	no	cas14j	cas3,cas2,cas14j,DEDDh	Unclear	CATGCGAGAAGTAGTGGTTCAAGAACATT	29	0	0	NA	NA	NA	1	1	TypeV	cas3,cas2,cas14j,DEDDh	NA|32aa|up_7|NZ_CP026326.1_1158653_1158749_-,NA|436aa|down_0|NZ_CP026326.1_1167922_1169230_+	cas14j|428aa|up_9|NZ_CP026326.1_1156774_1158058_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|143aa|up_8|NZ_CP026326.1_1158127_1158556_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|32aa|up_7|NZ_CP026326.1_1158653_1158749_-	NA	NA|291aa|up_6|NZ_CP026326.1_1158769_1159642_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NZ_CP026326.1_1159711_1160338_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NZ_CP026326.1_1160356_1162183_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NZ_CP026326.1_1162248_1163526_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NZ_CP026326.1_1163536_1164220_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NZ_CP026326.1_1164206_1165217_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NZ_CP026326.1_1165378_1166425_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NZ_CP026326.1_1167922_1169230_+	NA	NA|221aa|down_1|NZ_CP026326.1_1169236_1169899_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NZ_CP026326.1_1170188_1170749_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NZ_CP026326.1_1170764_1171157_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NZ_CP026326.1_1171166_1172390_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NZ_CP026326.1_1172402_1173347_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NZ_CP026326.1_1173456_1174779_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NZ_CP026326.1_1174844_1175678_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NZ_CP026326.1_1175688_1177665_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|229aa|down_9|NZ_CP026326.1_1177734_1178421_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
