assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002906495.1_ASM290649v1	NZ_CP026325	Helicobacter pylori strain dRdM1 chromosome, complete genome	1	350521-350647	1	CRISPRCasFinder	no	cas2	cas3,cas2,cas14j,DEDDh	Unclear	CTCTCTAGCGTTACTGAAGAGATTATTTCAAAAAAAC	37	0	0	NA	NA	NA	1	1	Unclear	cas3,cas2,cas14j,DEDDh	NA|102aa|up_0|NZ_CP026325.1_349829_350135_+,NA|89aa|down_1|NZ_CP026325.1_351080_351347_+,NA|32aa|down_2|NZ_CP026325.1_351358_351454_+,NA|261aa|down_5|NZ_CP026325.1_353269_354052_+	NA|298aa|up_9|NZ_CP026325.1_342273_343167_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NZ_CP026325.1_343163_343706_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NZ_CP026325.1_343638_344577_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NZ_CP026325.1_344573_345356_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NZ_CP026325.1_345604_346597_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NZ_CP026325.1_346621_347428_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NZ_CP026325.1_347424_347658_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|271aa|up_2|NZ_CP026325.1_347657_348470_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NZ_CP026325.1_348466_348871_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NZ_CP026325.1_349829_350135_+	NA	NA|117aa|down_0|NZ_CP026325.1_350742_351093_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|89aa|down_1|NZ_CP026325.1_351080_351347_+	NA	NA|32aa|down_2|NZ_CP026325.1_351358_351454_+	NA	NA|131aa|down_3|NZ_CP026325.1_351646_352039_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|112aa|down_4|NZ_CP026325.1_352814_353150_+	COG4499, COG4499, Predicted membrane protein [Function unknown]	NA|261aa|down_5|NZ_CP026325.1_353269_354052_+	NA	NA|299aa|down_6|NZ_CP026325.1_354045_354942_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_7|NZ_CP026325.1_354941_356492_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_8|NZ_CP026325.1_356500_358117_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_9|NZ_CP026325.1_358377_359046_+	cd03392, PAP2_like_2, PAP2_like_2 proteins
GCF_002906495.1_ASM290649v1	NZ_CP026325	Helicobacter pylori strain dRdM1 chromosome, complete genome	2	556223-556510	1	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	CTTCCTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCATTCTTTTTTCTCTTTTT	63	1	1	556286-556339	NZ_CP026325.1_555956-556009	NA	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA|116aa|up_5|NZ_CP026325.1_547377_547725_+,NA|482aa|up_4|NZ_CP026325.1_548183_549629_+,NA|536aa|down_1|NZ_CP026325.1_561674_563282_-,NA|219aa|down_3|NZ_CP026325.1_564430_565087_+,NA|127aa|down_6|NZ_CP026325.1_567191_567572_-,NA|115aa|down_7|NZ_CP026325.1_568004_568349_-,NA|377aa|down_8|NZ_CP026325.1_568731_569862_+,NA|307aa|down_9|NZ_CP026325.1_569876_570797_+	NA|444aa|up_9|NZ_CP026325.1_543057_544389_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|303aa|up_8|NZ_CP026325.1_544385_545294_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_7|NZ_CP026325.1_545290_546283_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|277aa|up_6|NZ_CP026325.1_546371_547202_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|116aa|up_5|NZ_CP026325.1_547377_547725_+	NA	NA|482aa|up_4|NZ_CP026325.1_548183_549629_+	NA	NA|170aa|up_3|NZ_CP026325.1_549638_550148_+	pfam16494, Na_Ca_ex_C, C-terminal extension of sodium/calcium exchanger domain	NA|749aa|up_2|NZ_CP026325.1_550266_552513_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|331aa|up_1|NZ_CP026325.1_552521_553514_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|200aa|up_0|NZ_CP026325.1_553518_554118_-	pfam09053, CagZ, CagZ	NA|523aa|down_0|NZ_CP026325.1_560053_561622_-	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]	NA|536aa|down_1|NZ_CP026325.1_561674_563282_-	NA	NA|253aa|down_2|NZ_CP026325.1_563286_564045_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|219aa|down_3|NZ_CP026325.1_564430_565087_+	NA	NA|281aa|down_4|NZ_CP026325.1_565122_565965_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|197aa|down_5|NZ_CP026325.1_566175_566766_-	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori	NA|127aa|down_6|NZ_CP026325.1_567191_567572_-	NA	NA|115aa|down_7|NZ_CP026325.1_568004_568349_-	NA	NA|377aa|down_8|NZ_CP026325.1_568731_569862_+	NA	NA|307aa|down_9|NZ_CP026325.1_569876_570797_+	NA
GCF_002906495.1_ASM290649v1	NZ_CP026325	Helicobacter pylori strain dRdM1 chromosome, complete genome	3	982197-982338	2	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	TTCAATCAAGGGACTTATAACTTTAATAGCA	31	0	0	NA	NA	I-B	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA|202aa|up_9|NZ_CP026325.1_962811_963417_+,NA|220aa|down_8|NZ_CP026325.1_995434_996094_+	NA|202aa|up_9|NZ_CP026325.1_962811_963417_+	NA	NA|380aa|up_8|NZ_CP026325.1_963409_964549_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_7|NZ_CP026325.1_964552_966580_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_6|NZ_CP026325.1_967098_968646_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|530aa|up_5|NZ_CP026325.1_968667_970257_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_4|NZ_CP026325.1_971159_972704_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|144aa|up_3|NZ_CP026325.1_975651_976083_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP026325.1_976082_979340_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP026325.1_979438_980131_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP026325.1_980274_981273_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NZ_CP026325.1_988994_990104_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP026325.1_990163_990370_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP026325.1_990525_991107_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP026325.1_991103_992249_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NZ_CP026325.1_992187_993168_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP026325.1_993168_993711_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP026325.1_993726_994638_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP026325.1_994634_995438_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP026325.1_995434_996094_+	NA	NA|201aa|down_9|NZ_CP026325.1_996095_996698_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_002906495.1_ASM290649v1	NZ_CP026325	Helicobacter pylori strain dRdM1 chromosome, complete genome	4	1170444-1170532	2	CRISPRCasFinder	no	cas14j	cas3,cas2,cas14j,DEDDh	Unclear	CATGCGAGAAGTAGTGGTTCAAGAACATT	29	0	0	NA	NA	NA	1	1	TypeV	cas3,cas2,cas14j,DEDDh	NA|32aa|up_7|NZ_CP026325.1_1162493_1162589_-,NA|436aa|down_0|NZ_CP026325.1_1171762_1173070_+	cas14j|428aa|up_9|NZ_CP026325.1_1160614_1161898_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|143aa|up_8|NZ_CP026325.1_1161967_1162396_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|32aa|up_7|NZ_CP026325.1_1162493_1162589_-	NA	NA|291aa|up_6|NZ_CP026325.1_1162609_1163482_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NZ_CP026325.1_1163551_1164178_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NZ_CP026325.1_1164196_1166023_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NZ_CP026325.1_1166088_1167366_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NZ_CP026325.1_1167376_1168060_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NZ_CP026325.1_1168046_1169057_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NZ_CP026325.1_1169218_1170265_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NZ_CP026325.1_1171762_1173070_+	NA	NA|221aa|down_1|NZ_CP026325.1_1173076_1173739_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NZ_CP026325.1_1174028_1174589_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NZ_CP026325.1_1174604_1174997_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NZ_CP026325.1_1175006_1176230_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NZ_CP026325.1_1176242_1177187_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NZ_CP026325.1_1177296_1178619_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NZ_CP026325.1_1178684_1179518_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NZ_CP026325.1_1179528_1181505_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|229aa|down_9|NZ_CP026325.1_1181574_1182261_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
