assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	1	704225-704316	1	CRISPRCasFinder	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA|70aa|up_9|NZ_CP026202.1_693300_693510_-,NA	NA|70aa|up_9|NZ_CP026202.1_693300_693510_-	NA	NA|1321aa|up_8|NZ_CP026202.1_693564_697527_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP026202.1_697566_698205_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP026202.1_698492_699584_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP026202.1_699583_700276_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP026202.1_700287_700674_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP026202.1_700681_701482_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP026202.1_701491_702082_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP026202.1_702092_702587_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP026202.1_702607_703936_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|183aa|down_0|NZ_CP026202.1_705289_705838_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|512aa|down_1|NZ_CP026202.1_709292_710828_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_2|NZ_CP026202.1_710877_711225_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|111aa|down_3|NZ_CP026202.1_711221_711554_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|down_4|NZ_CP026202.1_711491_711938_+	pfam13683, rve_3, Integrase core domain	NA|280aa|down_5|NZ_CP026202.1_711947_712787_-	pfam07508, Recombinase, Recombinase	NA|323aa|down_6|NZ_CP026202.1_714026_714995_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|59aa|down_7|NZ_CP026202.1_715004_715181_-	PRK09413, PRK09413, IS2 repressor TnpA; Reviewed	NA|388aa|down_8|NZ_CP026202.1_715467_716630_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|202aa|down_9|NZ_CP026202.1_716975_717581_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	2	944331-944478	2	CRISPRCasFinder	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	TTTCTAAGCTGCCTGTATGGCAGTGAAC	28	0	0	NA	NA	I-F	2	2	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA	NA|431aa|up_9|NZ_CP026202.1_929199_930492_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP026202.1_930582_931926_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP026202.1_931936_932548_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP026202.1_932702_936770_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP026202.1_936904_937399_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP026202.1_937942_938908_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP026202.1_939030_940797_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP026202.1_940797_942519_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP026202.1_942560_943265_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP026202.1_943549_943768_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP026202.1_944692_946969_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP026202.1_946999_947320_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP026202.1_947642_947867_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP026202.1_947939_949886_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP026202.1_949882_950998_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP026202.1_951148_952105_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP026202.1_952101_953760_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP026202.1_954185_954881_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP026202.1_955375_956275_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP026202.1_956418_958071_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	3	1097962-1098106	3	CRISPRCasFinder	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA	NA|330aa|up_9|NZ_CP026202.1_1085861_1086851_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP026202.1_1087247_1088156_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP026202.1_1088347_1090369_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP026202.1_1090946_1091624_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP026202.1_1091616_1092372_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP026202.1_1092358_1093513_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP026202.1_1093509_1094550_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP026202.1_1094636_1095926_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP026202.1_1095984_1096461_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP026202.1_1096612_1097896_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP026202.1_1098129_1100391_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP026202.1_1100573_1102007_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP026202.1_1102082_1103135_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP026202.1_1103318_1104272_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP026202.1_1104312_1105308_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP026202.1_1105462_1106281_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP026202.1_1106281_1107340_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP026202.1_1107342_1108032_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP026202.1_1108031_1108805_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP026202.1_1108971_1109121_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	4	1335337-1335433	4	CRISPRCasFinder	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA	NA|231aa|up_9|NZ_CP026202.1_1327132_1327825_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP026202.1_1328044_1328587_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP026202.1_1329057_1329924_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP026202.1_1329925_1330138_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP026202.1_1330245_1330767_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP026202.1_1330802_1332188_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP026202.1_1332361_1332856_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP026202.1_1332858_1333581_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP026202.1_1333698_1334208_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP026202.1_1334204_1335272_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP026202.1_1335466_1336360_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP026202.1_1336356_1337172_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP026202.1_1337182_1338442_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP026202.1_1338451_1340119_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP026202.1_1340436_1341486_+	TIGR03175, AllD, ureidoglycolate dehydrogenase	NA|412aa|down_5|NZ_CP026202.1_1341507_1342743_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP026202.1_1342753_1343539_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP026202.1_1343666_1344812_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP026202.1_1344833_1346135_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP026202.1_1346191_1347553_-	PRK08044, PRK08044, allantoinase AllB
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	5	1790850-1790981	5	CRISPRCasFinder	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	36	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA	NA|309aa|up_9|NZ_CP026202.1_1776962_1777889_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_8|NZ_CP026202.1_1777997_1778660_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_7|NZ_CP026202.1_1778700_1779237_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|797aa|up_6|NZ_CP026202.1_1779442_1781833_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|517aa|up_5|NZ_CP026202.1_1782034_1783585_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_4|NZ_CP026202.1_1783750_1784098_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|289aa|up_3|NZ_CP026202.1_1784203_1785070_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|265aa|up_2|NZ_CP026202.1_1785085_1785880_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|up_1|NZ_CP026202.1_1785917_1786280_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_0|NZ_CP026202.1_1786455_1789053_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|475aa|down_0|NZ_CP026202.1_1791331_1792756_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|631aa|down_1|NZ_CP026202.1_1792963_1794856_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_2|NZ_CP026202.1_1794870_1797534_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|255aa|down_3|NZ_CP026202.1_1797694_1798459_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|457aa|down_4|NZ_CP026202.1_1799002_1800373_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|285aa|down_5|NZ_CP026202.1_1800415_1801270_-	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|184aa|down_6|NZ_CP026202.1_1801266_1801818_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|298aa|down_7|NZ_CP026202.1_1801905_1802799_+	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|147aa|down_8|NZ_CP026202.1_1803001_1803442_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|462aa|down_9|NZ_CP026202.1_1803451_1804837_+	PRK10436, PRK10436, hypothetical protein; Provisional
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	6	1886301-1886430	6	CRISPRCasFinder	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCAT	40	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA	NA|96aa|up_9|NZ_CP026202.1_1875291_1875579_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP026202.1_1875575_1876862_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP026202.1_1876912_1877854_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP026202.1_1877868_1878639_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP026202.1_1879112_1880627_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP026202.1_1880657_1881800_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP026202.1_1881928_1883146_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP026202.1_1883219_1884773_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP026202.1_1884881_1885667_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP026202.1_1885672_1886263_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP026202.1_1886471_1886867_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP026202.1_1887127_1890349_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP026202.1_1890366_1891515_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP026202.1_1891970_1892792_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP026202.1_1892958_1893873_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP026202.1_1893938_1894889_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP026202.1_1894890_1895340_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP026202.1_1895464_1895959_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP026202.1_1895958_1898775_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP026202.1_1898817_1899759_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	7	3751616-3752254	1,7,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA|47aa|up_1|NZ_CP026202.1_3750325_3750466_-,NA	NA|434aa|up_9|NZ_CP026202.1_3741022_3742324_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP026202.1_3742371_3744606_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP026202.1_3744683_3744932_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP026202.1_3744931_3745267_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP026202.1_3745337_3746129_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP026202.1_3746356_3747994_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP026202.1_3748081_3749380_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP026202.1_3749439_3750312_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP026202.1_3750325_3750466_-	NA	NA|224aa|up_0|NZ_CP026202.1_3750604_3751276_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|339aa|down_0|NZ_CP026202.1_3752627_3753644_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|493aa|down_1|NZ_CP026202.1_3754091_3755570_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_2|NZ_CP026202.1_3755596_3756874_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_3|NZ_CP026202.1_3757192_3757978_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_4|NZ_CP026202.1_3758047_3759502_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_5|NZ_CP026202.1_3759595_3760933_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP026202.1_3760910_3761690_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP026202.1_3761686_3762547_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP026202.1_3762694_3763270_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP026202.1_3763286_3763547_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	8	3780504-3781814	2,8,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	20,20,21	21	TypeI-E	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA	NA|245aa|up_9|NZ_CP026202.1_3769153_3769888_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP026202.1_3770152_3770305_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_7|NZ_CP026202.1_3770497_3771610_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas3|900aa|up_6|NZ_CP026202.1_3771847_3774547_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_CP026202.1_3774644_3776207_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_CP026202.1_3776203_3776740_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_3|NZ_CP026202.1_3776751_3777807_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP026202.1_3777817_3778564_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas1|308aa|up_1|NZ_CP026202.1_3779193_3780117_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP026202.1_3780113_3780407_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP026202.1_3781834_3782872_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP026202.1_3783123_3784032_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP026202.1_3784033_3785461_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP026202.1_3785460_3786066_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP026202.1_3786115_3786439_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP026202.1_3786632_3786944_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP026202.1_3786962_3787673_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP026202.1_3787672_3788152_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP026202.1_3788148_3789198_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP026202.1_3789178_3789940_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002903105.1_ASM290310v1	NZ_CP026202	Escherichia coli strain ECONIH5 chromosome, complete genome	9	5003413-5003536	9	CRISPRCasFinder	no	DEDDh	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA|30aa|down_7|NZ_CP026202.1_5012432_5012522_+	NA|471aa|up_9|NZ_CP026202.1_4992868_4994281_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP026202.1_4994836_4995046_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP026202.1_4995500_4996127_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP026202.1_4996147_4998250_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP026202.1_4998253_4998901_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP026202.1_4998964_4999633_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP026202.1_4999629_5000415_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP026202.1_5000418_5001231_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP026202.1_5001242_5002847_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP026202.1_5002972_5003278_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP026202.1_5003850_5005107_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP026202.1_5005147_5006521_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP026202.1_5006735_5007377_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP026202.1_5007416_5008565_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP026202.1_5008855_5010067_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP026202.1_5010179_5011112_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP026202.1_5011108_5012134_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP026202.1_5012432_5012522_+	NA	NA|390aa|down_8|NZ_CP026202.1_5012687_5013857_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP026202.1_5014091_5014673_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002903105.1_ASM290310v1	NZ_CP026205	Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence	1	41-163	1	PILER-CR	no			Orphan	TTTCTGTATTGTGCAATACAG	21	0	0	NA	NA	NA	2	2	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA,NA|73aa|down_0|NZ_CP026205.1_1035_1254_+,NA|222aa|down_3|NZ_CP026205.1_6005_6671_+,NA|121aa|down_4|NZ_CP026205.1_6663_7026_+,NA|104aa|down_5|NZ_CP026205.1_7641_7953_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|73aa|down_0|NZ_CP026205.1_1035_1254_+	NA	NA|511aa|down_1|NZ_CP026205.1_1253_2786_+	cd01127, TrwB, Bacterial conjugation protein TrwB,  ATP binding domain	NA|1073aa|down_2|NZ_CP026205.1_2790_6009_+	pfam08751, TrwC, TrwC relaxase	NA|222aa|down_3|NZ_CP026205.1_6005_6671_+	NA	NA|121aa|down_4|NZ_CP026205.1_6663_7026_+	NA	NA|104aa|down_5|NZ_CP026205.1_7641_7953_-	NA	NA|156aa|down_6|NZ_CP026205.1_7949_8417_-	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins	NA|334aa|down_7|NZ_CP026205.1_8473_9475_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|378aa|down_8|NZ_CP026205.1_9525_10659_-	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|288aa|down_9|NZ_CP026205.1_10658_11522_-	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9
GCF_002903105.1_ASM290310v1	NZ_CP026208	Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence	1	106278-106471	1	CRT	no	PD-DExK	PD-DExK	Unclear	AAAAGCATTTGCATGAATG	19	0	0	NA	NA	NA	4	4	Orphan	RT,c2c9_V-U4,cas3,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2,PD-DExK,TnsE_C	NA|59aa|up_8|NZ_CP026208.1_96280_96457_-,NA|274aa|up_4|NZ_CP026208.1_100766_101588_-,NA|67aa|up_2|NZ_CP026208.1_102570_102771_-,NA|358aa|up_1|NZ_CP026208.1_102788_103862_-,NA|292aa|up_0|NZ_CP026208.1_104403_105279_+,NA|118aa|down_2|NZ_CP026208.1_109250_109604_+,NA|147aa|down_6|NZ_CP026208.1_112012_112453_+,NA|169aa|down_8|NZ_CP026208.1_113809_114316_+	NA|796aa|up_9|NZ_CP026208.1_93645_96033_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|up_8|NZ_CP026208.1_96280_96457_-	NA	NA|559aa|up_7|NZ_CP026208.1_96471_98148_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|385aa|up_6|NZ_CP026208.1_98412_99567_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|275aa|up_5|NZ_CP026208.1_99927_100752_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|up_4|NZ_CP026208.1_100766_101588_-	NA	NA|240aa|up_3|NZ_CP026208.1_101854_102574_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|up_2|NZ_CP026208.1_102570_102771_-	NA	NA|358aa|up_1|NZ_CP026208.1_102788_103862_-	NA	NA|292aa|up_0|NZ_CP026208.1_104403_105279_+	NA	NA|342aa|down_0|NZ_CP026208.1_106577_107603_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|308aa|down_1|NZ_CP026208.1_107941_108865_+	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|118aa|down_2|NZ_CP026208.1_109250_109604_+	NA	NA|117aa|down_3|NZ_CP026208.1_109622_109973_+	pfam07178, TraL, TraL protein	NA|266aa|down_4|NZ_CP026208.1_109972_110770_+	pfam05309, TraE, TraE protein	NA|413aa|down_5|NZ_CP026208.1_110772_112011_+	pfam06586, TraK, TraK protein	NA|147aa|down_6|NZ_CP026208.1_112012_112453_+	NA	NA|453aa|down_7|NZ_CP026208.1_112442_113801_+	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|169aa|down_8|NZ_CP026208.1_113809_114316_+	NA	NA|286aa|down_9|NZ_CP026208.1_114316_115174_+	cd03020, DsbA_DsbC_DsbG, DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold
