The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	27282	70036	4102813	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_005012067.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	77634	123122	4102813	tRNA,transposase	Planktothrix_phage(25.0%)	43	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929632.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_102938241.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	165936	304221	4102813	tRNA,protease,transposase	Klosneuvirus(10.53%)	117	NA	NA
WP_005015810.1|165936_166887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168330_169233_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169210_169840_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170122_171553_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171586_172216_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172264_173872_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173896_174580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174661_175138_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175344_176295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177410_177938_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178029_178845_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178905_179640_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179677_181756_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182005_182278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182379_183465_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183468_185373_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|185369_189068_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189128_189692_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189699_190122_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190149_190569_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190597_191044_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191170_191668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191822_194093_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194168_195374_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|195472_196423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196525_197161_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|197157_198051_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198445_199546_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199627_200002_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200061_202926_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203070_203811_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203880_205092_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205120_206089_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929699.1|207808_208132_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208236_209277_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209282_210062_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210107_210404_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210429_210705_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210761_211406_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211405_212092_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212290_213073_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213123_213849_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213880_215230_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215341_216274_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216731_219527_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220120_222964_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223134_223854_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223892_224441_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224595_225495_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225519_226470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226688_227384_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929685.1|227400_228813_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228925_230356_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230397_232311_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232629_233196_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233286_234288_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234402_235353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235472_236423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|236521_237472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|238202_239183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|239196_240321_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|240328_242083_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|242189_243089_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|243153_244137_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|244272_245253_+	AEC family transporter	NA	NA	NA	NA	NA
WP_102938242.1|245269_246661_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|246812_247349_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|247279_248665_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|248807_249446_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|249532_251422_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|251418_252360_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|252465_253515_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|253767_254469_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|254465_255164_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|255164_256520_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|256516_257008_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|257026_257983_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|259393_261496_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|261666_262710_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|262753_263497_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|264518_264929_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|265878_266676_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|266774_267725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268284_268830_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268955_270533_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270548_271703_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271716_271842_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271838_273590_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273586_275266_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275328_275877_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277019_277298_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278341_279292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879590.1|279278_279494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279569_279731_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280397_280847_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280856_281468_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281626_282475_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282500_283883_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283947_284589_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284728_285187_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285211_285988_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929722.1|286041_287178_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010930800.1|287174_288125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|288222_288849_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|288871_289798_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|289806_291393_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|291389_292394_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|292593_293454_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|293485_294487_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|294557_295367_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|295444_297304_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|297432_298635_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|298748_299630_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|301132_301693_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|301752_302703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|302894_303182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|303270_304221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	393107	447575	4102813	transposase	Heterosigma_akashiwo_virus(14.29%)	47	NA	NA
WP_005012067.1|393107_394058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_102938243.1|394146_395061_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|395057_395717_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|395806_396730_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|396735_397191_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|397187_398291_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|398246_398519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|398478_400098_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|400094_401153_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|401282_401777_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|401869_402847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|403042_404248_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|404244_405756_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|405771_407085_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|407275_407455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|407864_408599_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|411043_411994_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|412125_412524_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|412934_413405_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|413493_413838_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|413937_415338_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|417126_417645_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|417755_418511_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|418706_419939_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|419931_420717_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|420783_421755_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|421765_422743_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|422868_424041_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|424067_425096_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|425161_426355_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929591.1|428136_429087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929794.1|429185_430091_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929795.1|430266_430470_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929796.1|430980_431421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929797.1|431450_432110_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247315.1|432195_433824_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929799.1|433832_435296_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929800.1|435326_438713_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|438854_439259_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|439402_440389_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|440375_440657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|441402_442635_-	dehydratase	NA	NA	NA	NA	NA
WP_010929804.1|442634_443129_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929805.1|443260_444223_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|444200_445454_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013747.1|445575_446526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|446624_447575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	455784	502885	4102813	tRNA,transposase,protease,terminase,tail	uncultured_Caudovirales_phage(21.05%)	49	NA	NA
WP_023995141.1|455784_456810_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|456875_458057_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|458153_458606_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|458615_459956_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|460272_461310_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|461691_462051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|462134_463085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|463183_464125_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|464199_465150_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|465443_466538_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|466628_467501_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|467522_468362_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|468437_469955_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|470051_471152_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|471168_471591_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|471613_471826_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|471872_472793_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|472975_473725_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|473727_474057_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|474344_475697_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|475708_476092_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|476153_476954_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_019247378.1|478252_478459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|478530_479142_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|479696_479948_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|479940_480630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077069170.1|480886_481837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|482476_482962_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|482948_484226_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|484228_485647_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|485675_486731_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|486736_486979_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|487101_487704_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005013747.1|489181_490132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|490806_491058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|491120_491603_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|491616_491805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|491804_492200_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|492196_492595_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|492591_493014_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|493021_493522_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|493776_494295_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|494304_494634_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|494651_494942_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|494967_497580_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|497589_497949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|498016_498550_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|498546_498936_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|498928_502885_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 6
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	611091	733364	4102813	tRNA,transposase	Acinetobacter_phage(22.22%)	104	NA	NA
WP_010929956.1|611091_612042_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|612764_614039_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|614125_615208_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|615218_616031_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|616067_616394_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|616398_616959_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|617199_618192_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|618210_619206_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|619221_620598_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|620590_622972_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|622988_623378_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|623504_623735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|623839_624790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|624888_625839_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|625835_626708_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|627638_628925_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|628978_629905_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|629923_630379_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|631230_632022_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|632053_632674_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|632670_633300_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|633312_633921_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|633917_634907_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|635012_636227_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|638178_639129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|640562_641849_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|642014_642323_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|642344_642989_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|643029_644820_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|644932_645793_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|645789_646995_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|646991_647876_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|649392_649827_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|649789_650788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|650899_652045_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|652119_653448_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|653481_654072_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|654361_655156_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|656325_657060_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|657066_657933_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|657940_659716_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|659758_660256_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|660552_661503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|661601_662552_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|662892_663843_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|666166_667315_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|667359_667983_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|668135_669128_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|669124_669862_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|669941_670763_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|670851_671715_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|671841_672078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|674052_675087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|675145_676123_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|676130_677051_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|677047_678748_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|678750_679656_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|679699_680833_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_102938245.1|680961_681912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|682010_684080_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|684122_686225_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|686531_687608_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|687683_688568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|688750_689173_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|689182_690583_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|690625_691531_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|691629_693171_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|693205_693745_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|693757_694228_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|694365_694608_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|694724_695606_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|695678_695999_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|696850_697801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|699124_699901_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|699935_701708_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|701709_702612_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|702736_703096_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|703127_704090_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|704188_705139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|705151_706087_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|706146_706986_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|706982_708152_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|708148_709438_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|709480_709855_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|709969_710698_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|710705_711410_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|711673_713194_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|713249_713813_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|713831_714863_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|714859_715648_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_014905441.1|715823_716813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|720738_721641_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|721642_722497_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|722543_723653_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|723663_724182_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|724211_724844_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_102938246.1|724915_725575_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|725571_726711_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|727060_727933_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|728088_728826_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|728828_730460_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|730555_731545_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|731541_732252_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929632.1|732347_733364_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	751108	816040	4102813	tRNA,transposase	Escherichia_phage(20.0%)	56	NA	NA
WP_010931363.1|751108_752125_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|752209_752461_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|752464_753280_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|753392_754271_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|754382_756146_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|756261_757602_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931360.1|757598_758654_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_010927010.1|758670_760095_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|760094_760796_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|762300_763251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|763346_764318_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|764322_765003_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|765140_765533_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010930525.1|765640_766657_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|766896_767682_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|767776_769186_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|769196_769997_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|770017_770788_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|770830_771298_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_003818344.1|774192_775071_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|775997_778976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|779329_780280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|780276_781365_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|781400_782264_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|783403_783793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|783796_784579_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|784612_785398_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|785673_786813_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|786809_787601_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|787597_788347_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|788343_789216_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|789215_790217_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|790213_791377_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|791402_792086_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931345.1|792039_793374_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|793366_794461_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|795227_796178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|798118_799378_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|799374_800913_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|800909_802106_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|802102_803479_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|803490_804507_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|804575_805811_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|805911_806706_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|807075_807483_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|807900_808173_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|808342_808567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|808754_809609_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|809709_810012_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|810056_810674_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|810690_810999_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|810995_812711_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|812713_813331_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|813431_814016_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|814040_814685_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_010929956.1|815089_816040_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	864978	897878	4102813	tRNA,protease,transposase,integrase	Pseudomonas_phage(33.33%)	29	862226:862244	882114:882132
862226:862244	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|864978_865575_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|865571_866354_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|866426_867518_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|867797_868925_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|869266_870313_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|870823_873580_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|873581_876533_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|876548_877760_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|877756_877957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|877943_878894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|878910_879405_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|879408_879666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248155.1|880209_881121_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|881202_881487_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|882270_883221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
882114:882132	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_003814139.1|883414_884230_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|884362_885802_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|885815_886157_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|886211_887867_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|888018_889029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|889161_889935_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|890462_891413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003808356.1|891428_891932_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853362.1|891928_893365_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931296.1|894084_894564_+	membrane protein	NA	NA	NA	NA	NA
WP_004566249.1|894715_895015_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931294.1|895275_895857_-	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_010925959.1|895944_896829_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|896927_897878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	902390	950002	4102813	tRNA,protease,transposase,holin	Erwinia_phage(10.0%)	46	NA	NA
WP_005012808.1|902390_903341_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807159.1|903438_903999_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|904423_904729_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|904742_906077_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|906098_906638_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807164.1|906785_907250_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931290.1|907392_908508_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807166.1|908784_909288_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_019248127.1|909461_909626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931288.1|909616_910339_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_010931287.1|910335_911232_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931286.1|911228_912164_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247300.1|912124_912793_+	DUF1007 family protein	NA	NA	NA	NA	NA
WP_003818434.1|912783_913752_+	putative membrane protein	NA	NA	NA	NA	NA
WP_010931283.1|913800_915942_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931282.1|915954_916935_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931281.1|916949_917642_-	DUF484 family protein	NA	NA	NA	NA	NA
WP_003807183.1|917668_918580_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931280.1|918622_919513_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931279.1|919509_920364_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010925730.1|920647_921811_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_003818441.1|921921_922173_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_003807194.1|922252_923293_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_010931278.1|923572_924991_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_010931277.1|925061_925397_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|925396_926239_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931070.1|926337_927288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|927352_928324_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|928387_929407_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|929408_930782_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|931059_931740_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|931815_933879_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|933875_934970_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|934984_936244_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|936263_937952_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|938226_938979_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005013747.1|939117_940068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|940508_941414_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|941469_943077_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|943330_944836_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|944850_945315_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|945604_946555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|946653_947604_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|947765_948296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|948295_948607_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|949051_950002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1091998	1157305	4102813	protease,transposase,tRNA	Klebsiella_phage(16.67%)	48	NA	NA
WP_010929591.1|1091998_1092949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931198.1|1093047_1093419_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_010931197.1|1093543_1094374_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_010931196.1|1094384_1095845_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_003813056.1|1096101_1097175_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A2I6UFP9	Klebsiella_phage	46.4	3.9e-77
WP_023853656.1|1097196_1109850_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.5	1.2e-15
WP_010931194.1|1109979_1111389_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_010931193.1|1111523_1113023_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_003813049.1|1113034_1114144_+	glycolate oxidase subunit GlcE	NA	NA	NA	NA	NA
WP_003813047.1|1114176_1115406_+	glycolate oxidase subunit GlcF	NA	NA	NA	NA	NA
WP_010931192.1|1115396_1116308_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931191.1|1116310_1118524_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_033446272.1|1118699_1119710_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931189.1|1121504_1122623_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_010931188.1|1122877_1123753_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
WP_010931187.1|1123813_1124800_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010931186.1|1124970_1125891_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.5	2.7e-26
WP_003813026.1|1125903_1127019_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1127119_1127938_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1128035_1128647_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1128806_1130183_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1130245_1130704_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1130788_1131484_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1131545_1131827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1132389_1133142_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1133186_1134263_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1134259_1135210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1135647_1136598_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1136608_1137478_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1137548_1138244_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1138233_1138743_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1138739_1139960_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1139907_1140810_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_102938249.1|1141696_1142983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1143021_1144395_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1144433_1145135_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1145433_1146423_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1146523_1146985_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1147000_1147549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1147690_1149166_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1149271_1150363_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1150366_1151149_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1151158_1151947_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1153072_1153507_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1153503_1154514_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1154557_1155484_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1155769_1156138_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1156354_1157305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1166894	1209536	4102813	transposase	Ostreococcus_lucimarinus_virus(33.33%)	36	NA	NA
WP_005012067.1|1166894_1167845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1167906_1169016_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1169528_1170365_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1170491_1171400_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930176.1|1171396_1172347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1172732_1173275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1174310_1175261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1175502_1175871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1175916_1177041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1178175_1178916_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1179019_1179640_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931154.1|1179641_1181750_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1181894_1182554_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1182585_1183050_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1183325_1183511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1183562_1184315_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1184321_1185584_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1185625_1186864_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1187941_1189069_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1189079_1189907_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1189893_1190760_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1192126_1192531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1192893_1193805_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1193819_1194530_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1194526_1195771_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1195772_1196207_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1196235_1196541_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1196639_1197590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166214.1|1197646_1198795_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1198875_1199826_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1200357_1201155_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1201202_1201856_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1201812_1202901_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1203065_1205291_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1207568_1208465_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1208585_1209536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1239923	1305672	4102813	protease,transposase	uncultured_Mediterranean_phage(28.57%)	47	NA	NA
WP_005012808.1|1239923_1240874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1240930_1242043_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1244426_1245377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1245967_1246744_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1246861_1247125_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1247225_1248230_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1248430_1250032_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1250057_1250816_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1250907_1251564_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1251654_1252419_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1252428_1252617_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1252672_1253716_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1253712_1254126_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1254122_1254743_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010929591.1|1255023_1255974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1256141_1257533_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1257605_1258184_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1258300_1259698_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1259813_1261019_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1261118_1261637_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1261731_1261977_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1262204_1262519_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1262617_1267798_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1267794_1269963_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1270018_1272334_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1272338_1273658_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931112.1|1273676_1275350_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1275354_1276023_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_102938250.1|1276179_1279992_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003812857.1|1281295_1282441_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_102938251.1|1282589_1283519_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1283515_1284604_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1284600_1285404_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1285400_1286132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1286189_1287479_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1287575_1288178_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1292726_1293065_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1293772_1294039_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1295745_1296696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1296692_1298024_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1299284_1301285_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1301277_1301919_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1301915_1302323_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1302319_1303120_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1303194_1303899_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1303930_1304725_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010929956.1|1304721_1305672_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1308815	1382738	4102813	tRNA,transposase	Pelagibacter_phage(16.67%)	59	NA	NA
WP_010930525.1|1308815_1309832_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819753.1|1310022_1310613_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931097.1|1310703_1311009_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_023853546.1|1311476_1312484_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931095.1|1312480_1313356_+	membrane protein	NA	NA	NA	NA	NA
WP_010931094.1|1313430_1314831_-	MFS transporter	NA	NA	NA	NA	NA
WP_003809348.1|1314908_1315412_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931092.1|1315663_1316095_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931091.1|1316104_1316989_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931090.1|1317006_1320468_-	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_003819741.1|1320603_1321089_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_003819740.1|1321069_1321321_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_023853551.1|1321326_1321809_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_010931088.1|1321805_1322327_+	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931087.1|1322333_1323539_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931086.1|1323683_1324781_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931085.1|1324791_1325898_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|1326032_1326983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|1327085_1327670_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|1327739_1329161_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|1329268_1330615_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010931082.1|1330653_1332288_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_003812004.1|1332331_1332670_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931081.1|1332694_1333069_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003811986.1|1336181_1337063_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931080.1|1337170_1338799_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010931079.1|1338840_1340358_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247679.1|1340452_1341397_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813309.1|1342578_1343481_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_003813306.1|1343477_1344743_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813303.1|1344787_1345333_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813302.1|1345366_1346053_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010931077.1|1346024_1346954_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813298.1|1347125_1348115_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931076.1|1348179_1348464_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813293.1|1348479_1349244_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931075.1|1349240_1349747_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_010929591.1|1350908_1351859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_102938252.1|1351946_1353599_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1353609_1354398_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1354397_1354868_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1354942_1356256_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1356309_1356915_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1357231_1358182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1358178_1359129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1359227_1360178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1360438_1361467_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1361546_1362845_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1362841_1363423_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1363735_1367782_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1368022_1375684_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1375680_1376631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1377769_1378243_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1378382_1379003_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1379138_1379939_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1379993_1381085_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1381106_1381550_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1381578_1382211_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1382321_1382738_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1411105	1468858	4102813	transposase	Salmonella_phage(28.57%)	49	NA	NA
WP_010930742.1|1411105_1412056_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1415802_1416414_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1416636_1418097_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1418193_1419786_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1420139_1420397_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1420398_1421739_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1421834_1422524_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1422536_1423967_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1425691_1426513_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1426523_1428095_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1428123_1429101_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1429127_1429931_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1429927_1430722_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1430729_1431965_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1431978_1432392_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931031.1|1433664_1435392_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1435503_1436862_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1437154_1438105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1438145_1439216_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1439238_1440117_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1440288_1441260_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1441422_1442265_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1442426_1443107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1443100_1444270_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1444266_1445298_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1445365_1446583_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1446617_1448150_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1448230_1448854_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1448884_1449496_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1449531_1450002_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1450433_1451438_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1451474_1452989_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1452992_1453952_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1453980_1454784_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1454785_1456420_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1456503_1457565_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1457763_1458033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1458036_1458561_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1458976_1459927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1459923_1460958_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1461066_1461705_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1461999_1462227_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1462349_1463063_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931070.1|1463307_1464258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1464397_1464643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1464757_1466206_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929584.1|1466316_1467267_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1467263_1467713_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1467907_1468858_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1803156	1862052	4102813	transposase	Enterobacteria_phage(33.33%)	60	NA	NA
WP_005013747.1|1803156_1804107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930835.1|1804103_1805426_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1805526_1805844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1805977_1807291_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_014486083.1|1807321_1808863_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.1	1.1e-11
WP_003809615.1|1809486_1809963_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005013747.1|1810264_1811215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930833.1|1811557_1812013_+	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_003809869.1|1812048_1812315_-	type III secretion protein	NA	NA	NA	NA	NA
WP_003820040.1|1812304_1812604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930832.1|1812644_1813925_-	type III secretion system inner membrane ring subunit SctD	NA	NA	NA	NA	NA
WP_010930831.1|1813921_1816021_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_010930830.1|1816017_1816386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930829.1|1816382_1816793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930828.1|1816797_1817175_-	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930827.1|1817171_1818269_-	type III secretion system gatekeeper subunit SctW	NA	NA	NA	NA	NA
WP_003820049.1|1818432_1819050_+	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930826.1|1819071_1819347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568102.1|1819362_1819848_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930825.1|1819895_1820837_+	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_010930824.1|1820860_1822069_+	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_003809889.1|1822092_1822554_+	CesD/SycD/LcrH family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930823.1|1822558_1823080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930822.1|1823076_1823484_+	type III secretion system inner rod subunit SctI	NA	NA	NA	NA	NA
WP_010930821.1|1823480_1824305_+	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_003820059.1|1824297_1824960_+	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930820.1|1824929_1825568_+	HrpE/YscL family type III secretion apparatus protein	NA	NA	NA	NA	NA
WP_003820061.1|1825572_1826907_+	EscN/YscN/HrcN family type III secretion system ATPase	NA	NA	NA	NA	NA
WP_003820063.1|1826906_1827416_+	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_010930819.1|1827412_1827961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930818.1|1827957_1829037_+	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_004568087.1|1829033_1829705_+	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_010930817.1|1829710_1829977_+	type III secretion system export apparatus subunit SctS	NA	NA	NA	NA	NA
WP_010930816.1|1829988_1830789_+	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_010930815.1|1830785_1831835_+	type III secretion system export apparatus subunit SctU	NA	NA	NA	NA	NA
WP_010930814.1|1831831_1832230_+	type III secretion system chaperone	NA	NA	NA	NA	NA
WP_010930813.1|1832220_1834023_+	type III secretion system outer membrane ring subunit SctC	NA	NA	NA	NA	NA
WP_003809919.1|1834043_1834646_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930812.1|1834820_1835519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|1835555_1835756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930811.1|1835734_1837042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930810.1|1837083_1838271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930809.1|1838267_1840289_-	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_023995091.1|1840373_1842815_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930807.1|1842811_1843975_-	alanine racemase	NA	NA	NA	NA	NA
WP_003809933.1|1844058_1844487_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003820087.1|1844630_1844981_+	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_010930806.1|1844977_1846435_-	cardiolipin synthetase	NA	NA	NA	NA	NA
WP_010930805.1|1847089_1849801_+	autotransporter BapA	NA	NA	NA	NA	NA
WP_003809939.1|1850059_1850332_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930522.1|1850328_1851279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1851377_1852328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1852426_1855027_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1855133_1856138_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1856246_1857587_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1857627_1858656_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1858851_1859397_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1859393_1859954_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|1860052_1861003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1861101_1862052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	1879197	1940974	4102813	tRNA,protease,transposase	Pacmanvirus(11.11%)	59	NA	NA
WP_033446258.1|1879197_1880493_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1880494_1881133_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1881138_1882296_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1882322_1883678_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1883681_1884752_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1884890_1885127_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1885214_1886321_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1886286_1887591_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1887609_1888509_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1888692_1889850_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1889926_1891222_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1891335_1891875_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1892152_1892365_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1892384_1894415_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1894440_1894635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1895100_1897383_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1897792_1898092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1898376_1898790_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1898749_1899700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1899899_1900985_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1901000_1901762_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1901758_1902682_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1902780_1903305_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1903313_1904057_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1904152_1904392_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1904405_1904558_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1904643_1906134_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1906225_1907164_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1907160_1907337_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1907339_1908002_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1909623_1909767_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1909763_1910738_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1910904_1911855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1911851_1913126_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1913229_1914423_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1914419_1915073_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1915069_1916506_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1916493_1916853_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930768.1|1918772_1920638_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1920895_1922416_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1922503_1923154_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1924102_1925398_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1925419_1926304_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1926402_1927278_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1927267_1927624_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1927754_1928729_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1928858_1929038_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1929135_1929660_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1929670_1930507_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1930619_1930991_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1930987_1931539_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1931554_1933246_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1933294_1933975_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486082.1|1934222_1934687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1934856_1935786_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1935798_1936446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1936519_1938337_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1938420_1939371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1940023_1940974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	2302052	2367601	4102813	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2302052_2303003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2303203_2304013_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2304137_2305088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2305084_2305978_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2306102_2306297_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2306296_2306638_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2306647_2308510_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2308639_2309152_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2309154_2309478_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2309479_2309890_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2309927_2311139_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2311156_2311669_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2311884_2312376_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2312628_2314665_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930567.1|2314742_2315945_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2316073_2316724_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010929591.1|2318281_2319232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2319802_2320015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248063.1|2320032_2320764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2320798_2321440_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2321432_2322101_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2324313_2325090_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2325111_2326269_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2326265_2326697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2326693_2327491_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2327510_2327912_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2327978_2328950_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2329015_2330239_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2330466_2331417_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2331540_2333994_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2334182_2335487_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2335591_2336245_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2336247_2337558_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2337736_2338315_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2338426_2338627_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2338972_2339539_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_102938262.1|2339622_2339826_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	2.1e-16
WP_003812524.1|2340132_2340453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2340494_2340776_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2340850_2342107_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2342489_2342819_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2344389_2345211_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2345210_2346350_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_010930547.1|2346356_2347253_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2347267_2349175_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2349534_2352147_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2352199_2354500_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2354496_2355705_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2355966_2356341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2356337_2357288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2357386_2359381_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2359440_2360406_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2360395_2363257_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2363259_2363766_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2363870_2365079_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2365080_2366019_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2366180_2366654_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2366650_2367601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	2381102	2436367	4102813	tRNA,transposase	uncultured_Mediterranean_phage(14.29%)	52	NA	NA
WP_005012067.1|2381102_2382053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2382827_2383496_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2383477_2385433_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2385675_2386425_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2386437_2387301_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2387304_2388720_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2388853_2389582_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2389720_2389921_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2390096_2390495_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2390518_2391919_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2392037_2392790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2393078_2393756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004568488.1|2393782_2394562_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2394558_2395443_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2395460_2396240_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2396224_2396983_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2397120_2397756_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930525.1|2398023_2399040_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2399137_2400178_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2400312_2401605_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2402964_2403348_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2403365_2403953_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2403990_2404941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_102938264.1|2405039_2405888_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930521.1|2405924_2406698_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2406694_2407693_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2407777_2408554_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2408709_2410314_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2410694_2411819_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2411945_2412569_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2412565_2414467_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2414515_2415310_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2415322_2416324_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2416320_2416770_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2416819_2417668_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2417765_2418308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077123332.1|2418351_2419302_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2419457_2419784_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2419780_2420062_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2420061_2420541_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2420537_2422166_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2422162_2422507_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2422506_2425440_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2426598_2427549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2427647_2427944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2428050_2428968_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2428972_2429686_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2429699_2430671_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2432420_2432771_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2432774_2433962_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2434400_2435123_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2435416_2436367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	2457158	2528318	4102813	transposase	Brazilian_cedratvirus(10.0%)	54	NA	NA
WP_005013747.1|2457158_2458109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|2458167_2458941_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|2458933_2460490_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2460486_2461437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|2462763_2463366_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|2463605_2464307_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|2464300_2465083_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|2465267_2466218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|2466316_2467054_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|2467243_2468002_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|2468048_2469038_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|2469215_2470184_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|2471723_2472692_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|2472700_2473642_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2474115_2475126_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|2475116_2476631_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|2476627_2477974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|2477976_2479011_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|2479060_2480686_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|2481238_2482189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2482270_2483446_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2483459_2485517_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2485513_2486539_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2486550_2487840_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2487862_2488960_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2488956_2489847_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2489843_2491928_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2491959_2493129_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930467.1|2493170_2493917_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2493916_2494687_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2495542_2496328_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2496354_2498439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2498606_2500562_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2500885_2501386_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2501484_2503011_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2503148_2504036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2504050_2505004_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2505055_2507146_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2507161_2507548_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2510241_2511045_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2512338_2513241_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2513305_2514082_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2514403_2515453_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2515576_2517247_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2517251_2518046_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2518144_2519095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2519114_2520020_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2520097_2520796_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2520955_2521900_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2521909_2523397_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2523396_2524464_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2524527_2525940_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2526125_2527346_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2527367_2528318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	2730671	2794113	4102813	transposase	uncultured_Caudovirales_phage(40.0%)	53	NA	NA
WP_005012067.1|2730671_2731622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2731720_2732671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2733040_2733613_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2733615_2734626_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2734618_2735119_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2735129_2735471_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2735539_2736274_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2736290_2736560_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2736582_2737371_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2737417_2738434_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2738650_2740093_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2740271_2741891_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2742011_2743832_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2743910_2745443_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2745476_2747123_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2747192_2748215_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2748232_2749366_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2749368_2750058_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2750057_2750843_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2750886_2751651_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2751689_2753111_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2753176_2753881_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2753928_2754348_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2754360_2754768_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2754951_2755662_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2755788_2756079_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2756096_2756579_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2761084_2762239_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010930525.1|2762544_2763561_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2763807_2764596_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2764662_2765343_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2765339_2766110_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2766208_2767159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2767214_2768132_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2768142_2769321_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2769340_2770336_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2771924_2772533_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2772520_2773561_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2773578_2774541_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2774537_2775731_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2775727_2776525_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2776550_2777537_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2777555_2779595_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2779796_2780477_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2780490_2781402_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2781398_2781977_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2782115_2783021_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2783028_2786448_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2786435_2789036_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2789991_2790624_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2791017_2791776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2791772_2792975_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929588.1|2793162_2794113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	2963882	3014606	4102813	tRNA,transposase	Oenococcus_phage(50.0%)	43	NA	NA
WP_005012067.1|2963882_2964833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2965035_2966025_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2966108_2966462_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2966539_2967148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2968821_2969400_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2969424_2970378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2970417_2971335_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2971456_2972383_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2972390_2973137_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2973463_2974405_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2974631_2976329_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2976763_2978185_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2978338_2979118_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2979242_2980121_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2980226_2981351_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2981396_2982359_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2982351_2983206_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2983313_2983724_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2983720_2984671_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2984769_2985651_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2985728_2987108_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2987146_2987992_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2988007_2988322_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2988354_2988891_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2989542_2990493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813586.1|2990790_2991528_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2991595_2993233_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2993340_2994096_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2994083_2995046_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2995153_2995948_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2996009_2998085_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2998249_3000625_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|3000705_3002061_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005013747.1|3002070_3003021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930210.1|3003169_3003496_-	DUF3325 domain-containing protein	NA	NA	NA	NA	NA
WP_033447956.1|3005140_3005422_-	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|3005565_3008043_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813612.1|3008136_3009099_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010930209.1|3009091_3009625_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930208.1|3010346_3011297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813618.1|3011764_3012487_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|3012541_3013525_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3013655_3014606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	3032399	3094927	4102813	tRNA,transposase	Planktothrix_phage(18.18%)	48	NA	NA
WP_010930198.1|3032399_3033350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|3033396_3033951_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|3034018_3034864_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|3034933_3035902_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_095585338.1|3035901_3037698_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|3039586_3043513_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|3044248_3047479_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|3047760_3048588_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|3048621_3049317_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|3049309_3050590_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|3050599_3051577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|3051558_3053259_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|3053361_3054465_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|3054495_3055251_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|3055257_3056778_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|3056820_3057123_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|3057119_3057752_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|3057830_3059696_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|3059692_3060487_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|3060515_3061631_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|3062535_3063414_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|3063413_3064238_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_005012067.1|3064405_3065356_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|3065568_3068418_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|3068399_3069128_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930181.1|3069268_3070732_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|3070728_3071100_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|3071117_3072431_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|3072467_3072926_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_010930179.1|3073038_3073989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|3073985_3074999_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|3075138_3076125_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|3076483_3077191_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3077771_3078722_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|3078873_3079476_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|3079494_3080127_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|3080171_3080423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|3080364_3082251_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|3082269_3083112_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|3083108_3084467_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|3084687_3085482_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|3085712_3087206_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|3087441_3089523_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930170.1|3089717_3090758_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	39.9	3.0e-50
WP_010930169.1|3090892_3091909_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|3091930_3092788_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|3092832_3093609_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_010929956.1|3093976_3094927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	3103995	3144621	4102813	holin,transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	35	NA	NA
WP_003819794.1|3103995_3104409_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|3104449_3104767_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|3104851_3105568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102938281.1|3105831_3107253_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010930159.1|3107319_3110052_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|3110384_3111401_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|3111735_3112377_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3112467_3113904_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3114061_3115135_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3115131_3116268_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_005012808.1|3116366_3117317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809416.1|3117461_3117806_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3117872_3119753_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3119802_3120738_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930525.1|3121069_3122086_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3123023_3124451_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3124447_3125470_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3125459_3125933_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3126073_3126961_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3126957_3128601_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3128597_3129605_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930147.1|3130435_3131452_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3131551_3132184_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3132192_3132582_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_102938267.1|3132634_3133687_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3134550_3136257_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3136330_3136831_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3136845_3138903_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3138929_3139223_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3139324_3140272_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3140284_3141160_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3141280_3141841_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3141875_3142199_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3142634_3143372_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3143670_3144621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP016887	Bordetella pertussis strain J043 chromosome, complete genome	4102813	3398105	3465679	4102813	transposase	Bacillus_virus(25.0%)	54	NA	NA
WP_005012067.1|3398105_3399056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3399203_3400097_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3400296_3401991_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3402025_3402952_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3403020_3404118_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3404136_3405000_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3405011_3405794_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3405790_3406909_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3406905_3408438_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3408478_3409486_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3409630_3410353_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3410368_3411391_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3411707_3412442_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3412526_3414272_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3414268_3415021_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3415065_3416022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3416110_3416677_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3416684_3417545_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3417574_3418303_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3418334_3419018_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3419855_3420770_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3420834_3421743_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3421833_3423258_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3423259_3424582_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3424578_3426717_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3426794_3431915_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3432015_3432324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3432393_3432951_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3432966_3434448_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3434502_3436356_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3436618_3437956_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3437990_3439988_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3440005_3442054_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3442184_3443051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3443319_3444285_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3444399_3445548_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3445972_3446284_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3446317_3446578_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3446727_3447861_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3447931_3449068_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3449233_3450028_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3450090_3450534_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3450649_3451600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3451722_3452130_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3452202_3454398_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3454619_3455570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3455529_3456054_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3456185_3457157_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3457276_3459721_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3459736_3460327_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3460570_3461521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3461678_3462944_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3462977_3464075_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3464728_3465679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
