The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025606	Mycobacterium tuberculosis strain GG-137-10 chromosome, complete genome	4411446	2941159	2976525	4411446	integrase,head,capsid,tRNA,protease,transposase,terminase	Tupanvirus(11.11%)	41	2969960:2969987	2980942:2980969
WP_003413486.1|2941159_2943238_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943346_2943574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943570_2944956_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945300_2945801_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945817_2946258_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946404_2947082_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947066_2947420_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947432_2947858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947854_2948529_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948606_2949428_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949563_2950457_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950459_2951278_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951292_2952474_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952532_2952964_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953477_2954719_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955028_2955391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955737_2956862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956863_2957403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957542_2958841_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958879_2959161_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959305_2959791_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959817_2960075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960075_2962412_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962440_2962683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962683_2963361_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963556_2964213_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964375_2964822_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964996_2965329_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965448_2965808_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965909_2966368_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966503_2966884_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966880_2968377_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968566_2968803_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968875_2969049_+	hypothetical protein	NA	NA	NA	NA	NA
2969960:2969987	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970093_2970525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970521_2971520_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971533_2971998_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972130_2973391_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973765_2975205_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975212_2975746_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975898_2976525_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980942:2980969	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025606	Mycobacterium tuberculosis strain GG-137-10 chromosome, complete genome	4411446	3710414	3796343	4411446	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_102765681.1|3710414_3711675_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711730_3711892_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711913_3713443_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713375_3714314_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714322_3715690_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715758_3716976_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717071_3718580_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718576_3719728_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719918_3720764_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721238_3721679_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721712_3722582_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722602_3723613_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723897_3724530_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724596_3725826_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726108_3727458_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727469_3728609_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728605_3729337_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023642420.1|3729345_3736917_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743170_3743428_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743683_3753157_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753782_3754229_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754265_3755006_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755300_3755588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755924_3767075_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767318_3768113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768194_3768566_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768463_3768682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768708_3768969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769083_3769473_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769486_3769780_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769776_3770622_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770745_3771021_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771017_3771275_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771316_3772507_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772623_3772992_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772988_3773540_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773546_3774128_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774108_3774477_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774454_3774847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774843_3777474_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777709_3778174_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3778540_3780316_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780316_3780961_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780959_3781394_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781482_3784722_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784913_3786254_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786295_3787471_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787524_3787629_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787707_3788349_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788349_3788598_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788602_3790030_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790137_3790791_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790829_3792335_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792339_3793230_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793238_3794849_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794793_3795039_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795081_3796343_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
