The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	4411463	2941127	2976493	4411463	transposase,integrase,protease,terminase,head,tRNA,capsid	Tupanvirus(11.11%)	41	2969928:2969955	2980910:2980937
WP_003413486.1|2941127_2943206_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943314_2943542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943538_2944924_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945268_2945769_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945785_2946226_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946372_2947050_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947034_2947388_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947400_2947826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947822_2948497_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948574_2949396_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949531_2950425_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950427_2951246_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951260_2952442_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952500_2952932_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953445_2954687_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2954996_2955359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955705_2956830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956831_2957371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957510_2958809_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958847_2959129_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959273_2959759_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959785_2960043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960043_2962380_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962408_2962651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962651_2963329_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963524_2964181_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964343_2964790_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964964_2965297_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965416_2965776_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965877_2966336_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966471_2966852_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966848_2968345_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968534_2968771_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968843_2969017_+	hypothetical protein	NA	NA	NA	NA	NA
2969928:2969955	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970061_2970493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970489_2971488_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971501_2971966_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972098_2973359_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973733_2975173_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975180_2975714_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975866_2976493_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980910:2980937	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025602	Mycobacterium tuberculosis strain GG-109-10 chromosome, complete genome	4411463	3710410	3796339	4411463	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710410_3711671_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711726_3711888_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711909_3713439_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713371_3714310_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714318_3715686_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715754_3716972_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717067_3718576_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718572_3719724_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719914_3720760_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721234_3721675_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721708_3722578_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722598_3723609_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723893_3724526_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724592_3725822_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726104_3727454_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727465_3728605_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728601_3729333_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023642420.1|3729341_3736913_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743166_3743424_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743679_3753153_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753778_3754225_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754261_3755002_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755296_3755584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755920_3767071_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767314_3768109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768190_3768562_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768459_3768678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768704_3768965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769079_3769469_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769482_3769776_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769772_3770618_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770741_3771017_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771013_3771271_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771312_3772503_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772619_3772988_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772984_3773536_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773542_3774124_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774104_3774473_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774450_3774843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774839_3777470_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777705_3778170_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3778536_3780312_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780312_3780957_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780955_3781390_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781478_3784718_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784909_3786250_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786291_3787467_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787520_3787625_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787703_3788345_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788345_3788594_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788598_3790026_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790133_3790787_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790825_3792331_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792335_3793226_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793234_3794845_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794789_3795035_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795077_3796339_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
