The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025608	Mycobacterium tuberculosis strain GG-229-10 chromosome, complete genome	4411519	2941175	2976535	4411519	transposase,capsid,terminase,tRNA,head,integrase,protease	Tupanvirus(11.11%)	41	2969967:2969994	2980952:2980979
WP_003413486.1|2941175_2943254_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943362_2943590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943586_2944972_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945316_2945817_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945833_2946274_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946420_2947098_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947082_2947436_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947448_2947874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947870_2948545_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948622_2949444_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949579_2950473_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950475_2951294_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951308_2952490_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952548_2952980_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953493_2954735_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955044_2955407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955753_2956878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956879_2957419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957558_2958857_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958895_2959177_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959321_2959807_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959833_2960091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102776520.1|2960091_2962419_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962447_2962690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962690_2963368_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963563_2964220_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964382_2964829_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965003_2965336_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965455_2965815_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965916_2966375_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966510_2966891_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966887_2968384_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968573_2968810_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968882_2969056_+	hypothetical protein	NA	NA	NA	NA	NA
2969967:2969994	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970100_2970532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970528_2971527_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971540_2972005_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972137_2973398_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_102776521.1|2973772_2975215_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	37.8	1.4e-64
WP_003899412.1|2975222_2975756_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975908_2976535_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980952:2980979	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025608	Mycobacterium tuberculosis strain GG-229-10 chromosome, complete genome	4411519	3710433	3796371	4411519	transposase,tRNA	Burkholderia_virus(28.57%)	59	NA	NA
WP_087902221.1|3710433_3711694_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711749_3711911_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711932_3713462_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713394_3714333_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714341_3715709_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715777_3716995_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717090_3718599_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718595_3719747_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719937_3720783_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_102776525.1|3721257_3721698_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721731_3722601_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722621_3723632_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723916_3724549_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724615_3725845_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726127_3727477_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727488_3728628_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728624_3729356_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023642420.1|3729364_3736936_-	PPE family protein	NA	NA	NA	NA	NA
WP_009938644.1|3736984_3738001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158649911.1|3738158_3742775_-	PE domain-containing protein	NA	NA	NA	NA	NA
WP_003417619.1|3743198_3743456_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_102776526.1|3743711_3753185_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753810_3754257_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754293_3755034_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755328_3755616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755952_3767103_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767346_3768141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768222_3768594_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768491_3768710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768736_3768997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769111_3769501_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769514_3769808_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769804_3770650_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770773_3771049_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771045_3771303_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771344_3772535_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772651_3773020_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3773016_3773568_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773574_3774156_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774136_3774505_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774482_3774875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774871_3777502_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777737_3778202_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3778568_3780344_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780344_3780989_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780987_3781422_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_102776527.1|3781510_3784750_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784941_3786282_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786323_3787499_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787552_3787657_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787735_3788377_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788377_3788626_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788630_3790058_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790165_3790819_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790857_3792363_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792367_3793258_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793266_3794877_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794821_3795067_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795109_3796371_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
