The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025605	Mycobacterium tuberculosis strain GG-134-11 chromosome, complete genome	4411399	2941134	2976500	4411399	integrase,capsid,tRNA,protease,terminase,transposase,head	Tupanvirus(11.11%)	41	2969935:2969962	2980917:2980944
WP_003413486.1|2941134_2943213_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943321_2943549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943545_2944931_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945275_2945776_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945792_2946233_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946379_2947057_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947041_2947395_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947407_2947833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947829_2948504_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948581_2949403_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949538_2950432_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950434_2951253_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951267_2952449_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952507_2952939_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953452_2954694_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955003_2955366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955712_2956837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956838_2957378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957517_2958816_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958854_2959136_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959280_2959766_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959792_2960050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960050_2962387_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962415_2962658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962658_2963336_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963531_2964188_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964350_2964797_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2964971_2965304_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965423_2965783_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965884_2966343_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966478_2966859_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966855_2968352_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968541_2968778_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968850_2969024_+	hypothetical protein	NA	NA	NA	NA	NA
2969935:2969962	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970068_2970500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970496_2971495_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971508_2971973_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972105_2973366_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973740_2975180_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975187_2975721_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975873_2976500_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980917:2980944	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025605	Mycobacterium tuberculosis strain GG-134-11 chromosome, complete genome	4411399	3710401	3796303	4411399	transposase,tRNA	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710401_3711662_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711717_3711879_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711900_3713430_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713362_3714301_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714309_3715677_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_102770773.1|3715745_3716963_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717058_3718567_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718563_3719715_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719905_3720751_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721225_3721666_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721699_3722569_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722589_3723600_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723884_3724517_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724583_3725813_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726095_3727445_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727456_3728596_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728592_3729324_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023642420.1|3729332_3736904_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743130_3743388_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_102770774.1|3743643_3753117_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753742_3754189_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754225_3754966_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755260_3755548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755884_3767035_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767278_3768073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768154_3768526_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768423_3768642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768668_3768929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769043_3769433_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769446_3769740_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769736_3770582_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770705_3770981_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3770977_3771235_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771276_3772467_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772583_3772952_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3772948_3773500_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773506_3774088_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774068_3774437_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774414_3774807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774803_3777434_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777669_3778134_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3778500_3780276_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780276_3780921_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780919_3781354_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781442_3784682_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784873_3786214_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786255_3787431_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787484_3787589_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787667_3788309_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788309_3788558_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788562_3789990_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790097_3790751_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790789_3792295_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792299_3793190_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793198_3794809_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794753_3794999_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795041_3796303_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
