assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	1	333648-334446	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGNGCCGCCGGNN	18	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP025601.1_333163_333346_-,NA	NA|398aa|up_9|NZ_CP025601.1_323341_324535_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP025601.1_324570_326253_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP025601.1_326269_328465_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP025601.1_328578_329712_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP025601.1_329708_330329_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP025601.1_330425_331007_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP025601.1_330936_331662_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP025601.1_331751_332672_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP025601.1_332711_333140_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP025601.1_333163_333346_-	NA	NA|537aa|down_0|NZ_CP025601.1_339348_340959_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP025601.1_340982_341891_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP025601.1_342114_344010_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP025601.1_344006_345623_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP025601.1_345619_349612_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP025601.1_349608_349917_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP025601.1_349919_351461_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP025601.1_351509_351803_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP025601.1_351832_352123_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP025601.1_352133_353021_+	pfam14011, ESX-1_EspG, EspG family
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	2	366448-367146	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366736-366777|366811-366843	NZ_CP025601.1_374782-374823|NZ_CP025601.1_373597-373629	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP025601.1_363460_363763_+,NA|161aa|down_1|NZ_CP025601.1_376571_377054_-,NA|410aa|down_5|NZ_CP025601.1_379170_380400_+	NA|262aa|up_9|NZ_CP025601.1_358155_358941_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP025601.1_358929_359733_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP025601.1_359742_361140_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP025601.1_361318_363094_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP025601.1_363236_363464_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP025601.1_363460_363763_+	NA	NA|74aa|up_3|NZ_CP025601.1_363810_364032_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP025601.1_364028_364454_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP025601.1_364589_365222_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP025601.1_365218_366127_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP025601.1_375912_376584_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP025601.1_376571_377054_-	NA	NA|239aa|down_2|NZ_CP025601.1_377111_377828_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP025601.1_377929_378586_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP025601.1_378655_379147_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP025601.1_379170_380400_+	NA	NA|621aa|down_6|NZ_CP025601.1_380554_382417_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP025601.1_382488_382875_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP025601.1_382877_383540_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP025601.1_383600_384485_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	3	631261-631398	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631279-631296|631279-631296|631363-631380	NZ_CP025601.1_22466-22483|NZ_CP025601.1_1412058-1412075|NZ_CP025601.1_973229-973246	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP025601.1_622099_622261_-,NA|478aa|up_0|NZ_CP025601.1_628276_629710_-,NA|450aa|down_2|NZ_CP025601.1_633033_634383_-,NA|93aa|down_5|NZ_CP025601.1_635913_636192_-	NA|325aa|up_9|NZ_CP025601.1_619869_620844_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP025601.1_620885_622103_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP025601.1_622099_622261_-	NA	NA|106aa|up_6|NZ_CP025601.1_622307_622625_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP025601.1_622771_624556_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP025601.1_624451_625459_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP025601.1_625540_626419_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP025601.1_626435_627230_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP025601.1_627226_628267_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP025601.1_628276_629710_-	NA	NA|211aa|down_0|NZ_CP025601.1_631721_632354_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP025601.1_632350_633013_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP025601.1_633033_634383_-	NA	NA|381aa|down_3|NZ_CP025601.1_634394_635537_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP025601.1_635551_635854_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP025601.1_635913_636192_-	NA	NA|418aa|down_6|NZ_CP025601.1_636188_637442_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP025601.1_637561_637948_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP025601.1_638010_638895_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP025601.1_638990_639893_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	4	691995-692071	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP025601.1_677679_677895_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP025601.1_677891_678299_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP025601.1_678358_679045_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP025601.1_679198_681832_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP025601.1_681854_684242_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP025601.1_684379_685102_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP025601.1_685098_685896_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP025601.1_685897_686785_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP025601.1_686790_688005_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP025601.1_689028_690474_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP025601.1_693206_694757_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP025601.1_694808_695201_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP025601.1_695197_695455_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP025601.1_695637_696873_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP025601.1_697123_697537_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP025601.1_697533_697770_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP025601.1_697873_698380_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP025601.1_698493_698964_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP025601.1_699007_699769_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP025601.1_699825_700137_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	5	926591-927538	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	4	927374-927409|927374-927409|927374-927409|927374-927409	NZ_CP025601.1_675098-675063|NZ_CP025601.1_1213739-1213774|NZ_CP025601.1_2423569-2423534|NZ_CP025601.1_2423794-2423759	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP025601.1_931548_932100_-,NA|81aa|down_8|NZ_CP025601.1_937563_937806_+	NA|685aa|up_9|NZ_CP025601.1_914227_916282_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP025601.1_916447_917617_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP025601.1_917704_918721_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP025601.1_918882_919524_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP025601.1_919604_920660_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP025601.1_920711_921104_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP025601.1_921161_921584_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP025601.1_921545_921836_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP025601.1_921940_922846_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP025601.1_922864_923680_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP025601.1_927807_930456_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP025601.1_930923_931568_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP025601.1_931548_932100_-	NA	NA|218aa|down_3|NZ_CP025601.1_932249_932903_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP025601.1_932973_934002_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP025601.1_934690_935461_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP025601.1_935547_936360_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP025601.1_936427_937288_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP025601.1_937563_937806_+	NA	NA|431aa|down_9|NZ_CP025601.1_938082_939375_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	6	1191306-1191414	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP025601.1_1180673_1182305_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP025601.1_1182380_1183445_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP025601.1_1183497_1183971_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP025601.1_1184004_1184868_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP025601.1_1184872_1185730_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP025601.1_1185730_1186813_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP025601.1_1186893_1187313_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP025601.1_1187424_1187991_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP025601.1_1187987_1188383_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP025601.1_1188410_1190414_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP025601.1_1192499_1194263_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP025601.1_1194259_1195033_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP025601.1_1195044_1196082_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP025601.1_1196268_1197105_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP025601.1_1197220_1198072_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP025601.1_1198145_1199363_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP025601.1_1199415_1200360_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP025601.1_1200582_1201650_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP025601.1_1201706_1203101_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP025601.1_1203302_1204025_+	pfam06271, RDD, RDD family
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	7	1211940-1212796	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	74	1212323-1212344|1212323-1212344|1212323-1212344|1212323-1212344|1212368-1212383|1212506-1212527|1212506-1212527|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641|1212623-1212641	NZ_CP025601.1_362650-362671|NZ_CP025601.1_2088979-2088958|NZ_CP025601.1_2421266-2421287|NZ_CP025601.1_2960582-2960561|NZ_CP025601.1_2088598-2088583|NZ_CP025601.1_837402-837423|NZ_CP025601.1_1217634-1217655|NZ_CP025601.1_674762-674744|NZ_CP025601.1_1213466-1213484|NZ_CP025601.1_1217607-1217625|NZ_CP025601.1_1217679-1217697|NZ_CP025601.1_1630690-1630672|NZ_CP025601.1_1633516-1633498|NZ_CP025601.1_1990803-1990785|NZ_CP025601.1_2061526-2061508|NZ_CP025601.1_2061973-2061955|NZ_CP025601.1_2062072-2062054|NZ_CP025601.1_2802131-2802113|NZ_CP025601.1_2805659-2805641|NZ_CP025601.1_150187-150205|NZ_CP025601.1_335205-335187|NZ_CP025601.1_335658-335640|NZ_CP025601.1_335709-335691|NZ_CP025601.1_335718-335700|NZ_CP025601.1_337988-337970|NZ_CP025601.1_338117-338099|NZ_CP025601.1_338384-338366|NZ_CP025601.1_338413-338431|NZ_CP025601.1_338507-338489|NZ_CP025601.1_363038-363020|NZ_CP025601.1_443427-443409|NZ_CP025601.1_546772-546754|NZ_CP025601.1_623962-623980|NZ_CP025601.1_624184-624202|NZ_CP025601.1_673928-673910|NZ_CP025601.1_840185-840203|NZ_CP025601.1_1090969-1090987|NZ_CP025601.1_1091617-1091635|NZ_CP025601.1_1095675-1095657|NZ_CP025601.1_1212995-1213013|NZ_CP025601.1_1213385-1213403|NZ_CP025601.1_1218027-1218045|NZ_CP025601.1_1489202-1489184|NZ_CP025601.1_1619107-1619089|NZ_CP025601.1_1636029-1636011|NZ_CP025601.1_1636038-1636020|NZ_CP025601.1_1864317-1864299|NZ_CP025601.1_1864845-1864827|NZ_CP025601.1_1990077-1990059|NZ_CP025601.1_2001439-2001457|NZ_CP025601.1_2088796-2088778|NZ_CP025601.1_2303510-2303492|NZ_CP025601.1_2356961-2356943|NZ_CP025601.1_2419620-2419638|NZ_CP025601.1_2423707-2423689|NZ_CP025601.1_2569202-2569184|NZ_CP025601.1_2693498-2693516|NZ_CP025601.1_2795446-2795428|NZ_CP025601.1_2796028-2796010|NZ_CP025601.1_3054626-3054644|NZ_CP025601.1_3054725-3054743|NZ_CP025601.1_3705557-3705575|NZ_CP025601.1_3737534-3737516|NZ_CP025601.1_3738158-3738140|NZ_CP025601.1_3738401-3738383|NZ_CP025601.1_3738534-3738516|NZ_CP025601.1_3802403-3802421|NZ_CP025601.1_3802586-3802604|NZ_CP025601.1_3802754-3802772|NZ_CP025601.1_3930564-3930582|NZ_CP025601.1_3932294-3932312|NZ_CP025601.1_3940801-3940819|NZ_CP025601.1_4031793-4031775|NZ_CP025601.1_4094318-4094336	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP025601.1_1207372_1207639_+,NA|61aa|down_3|NZ_CP025601.1_1215214_1215397_+,NA|35aa|down_4|NZ_CP025601.1_1215506_1215611_+	NA|465aa|up_9|NZ_CP025601.1_1201706_1203101_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP025601.1_1203302_1204025_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP025601.1_1204056_1205223_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP025601.1_1205293_1205788_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP025601.1_1205973_1206408_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP025601.1_1206509_1207376_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP025601.1_1207372_1207639_+	NA	NA|674aa|up_2|NZ_CP025601.1_1207625_1209647_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP025601.1_1209745_1210474_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP025601.1_1210584_1211373_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP025601.1_1214029_1214350_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP025601.1_1214502_1214937_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP025601.1_1215038_1215203_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP025601.1_1215214_1215397_+	NA	NA|35aa|down_4|NZ_CP025601.1_1215506_1215611_+	NA	NA|152aa|down_5|NZ_CP025601.1_1215588_1216044_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP025601.1_1216458_1219020_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP025601.1_1219237_1220176_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP025601.1_1220563_1221844_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP025601.1_1221948_1222776_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	8	1572178-1573249	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP025601.1_1563941_1564259_+,NA	NA|103aa|up_9|NZ_CP025601.1_1561456_1561765_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP025601.1_1561761_1563381_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP025601.1_1563941_1564259_+	NA	NA|209aa|up_6|NZ_CP025601.1_1564393_1565020_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP025601.1_1565085_1565418_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP025601.1_1565433_1566690_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP025601.1_1566817_1568029_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP025601.1_1568101_1569580_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP025601.1_1569576_1570962_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP025601.1_1571039_1572074_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP025601.1_1574103_1574505_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP025601.1_1574501_1574759_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP025601.1_1574841_1575801_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP025601.1_1575825_1576788_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP025601.1_1576921_1577524_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP025601.1_1577604_1579572_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP025601.1_1579589_1580414_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP025601.1_1580582_1581065_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP025601.1_1581136_1581961_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP025601.1_1582157_1583096_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	9	2088268-2088522	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088349-2088366|2088349-2088366|2088439-2088456	NZ_CP025601.1_401078-401061|NZ_CP025601.1_607417-607400|NZ_CP025601.1_3450249-3450232	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025601.1_2087627_2087891_-,NA	NA|165aa|up_9|NZ_CP025601.1_2073921_2074416_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP025601.1_2074819_2075497_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP025601.1_2075855_2078681_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP025601.1_2078907_2079768_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP025601.1_2079808_2080675_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP025601.1_2080679_2082566_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP025601.1_2082581_2084615_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025601.1_2084734_2086960_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025601.1_2087235_2087631_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025601.1_2087627_2087891_-	NA	NA|346aa|down_0|NZ_CP025601.1_2089659_2090697_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025601.1_2090696_2092064_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP025601.1_2092237_2093674_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP025601.1_2093709_2095161_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025601.1_2095190_2096141_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025601.1_2096155_2096572_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025601.1_2096849_2097272_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025601.1_2097320_2097623_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025601.1_2097619_2097934_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025601.1_2097933_2099667_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	10	2163375-2163482	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGTGAC	39	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP025601.1_2159919_2160327_-,NA|127aa|down_6|NZ_CP025601.1_2176548_2176929_-	NA|216aa|up_9|NZ_CP025601.1_2153233_2153881_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP025601.1_2153887_2156110_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP025601.1_2156147_2156591_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP025601.1_2156704_2157298_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP025601.1_2157380_2157986_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP025601.1_2158085_2159090_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP025601.1_2159189_2159942_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP025601.1_2159919_2160327_-	NA	NA|368aa|up_1|NZ_CP025601.1_2160461_2161565_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP025601.1_2161564_2162761_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP025601.1_2167647_2170611_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP025601.1_2171059_2171524_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP025601.1_2171621_2172485_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP025601.1_2172522_2173794_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP025601.1_2174065_2175181_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP025601.1_2175171_2176512_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP025601.1_2176548_2176929_-	NA	NA|621aa|down_7|NZ_CP025601.1_2177085_2178948_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP025601.1_2178955_2179435_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP025601.1_2179671_2180445_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	11	2168813-2169032	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP025601.1_2159919_2160327_-,NA|127aa|down_5|NZ_CP025601.1_2176548_2176929_-	NA|741aa|up_9|NZ_CP025601.1_2153887_2156110_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP025601.1_2156147_2156591_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP025601.1_2156704_2157298_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP025601.1_2157380_2157986_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP025601.1_2158085_2159090_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP025601.1_2159189_2159942_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP025601.1_2159919_2160327_-	NA	NA|368aa|up_2|NZ_CP025601.1_2160461_2161565_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP025601.1_2161564_2162761_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP025601.1_2162930_2167310_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP025601.1_2171059_2171524_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP025601.1_2171621_2172485_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP025601.1_2172522_2173794_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP025601.1_2174065_2175181_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP025601.1_2175171_2176512_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP025601.1_2176548_2176929_-	NA	NA|621aa|down_6|NZ_CP025601.1_2177085_2178948_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP025601.1_2178955_2179435_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP025601.1_2179671_2180445_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP025601.1_2180448_2181216_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	12	3119217-3120571	1,8,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP025601.1_3112496_3112751_-,NA|135aa|up_7|NZ_CP025601.1_3112898_3113303_+,NA|64aa|up_6|NZ_CP025601.1_3113299_3113491_+,NA|86aa|up_4|NZ_CP025601.1_3115077_3115335_+,NA|104aa|up_3|NZ_CP025601.1_3115439_3115751_+,NA|203aa|up_2|NZ_CP025601.1_3116170_3116779_+,NA	NA|92aa|up_9|NZ_CP025601.1_3112045_3112321_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP025601.1_3112496_3112751_-	NA	NA|135aa|up_7|NZ_CP025601.1_3112898_3113303_+	NA	NA|64aa|up_6|NZ_CP025601.1_3113299_3113491_+	NA	NA|385aa|up_5|NZ_CP025601.1_3113689_3114844_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP025601.1_3115077_3115335_+	NA	NA|104aa|up_3|NZ_CP025601.1_3115439_3115751_+	NA	NA|203aa|up_2|NZ_CP025601.1_3116170_3116779_+	NA	NA|470aa|up_1|NZ_CP025601.1_3116849_3118259_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP025601.1_3118255_3119068_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP025601.1_3120597_3121859_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP025601.1_3123656_3123998_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP025601.1_3123998_3125015_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP025601.1_3125027_3126176_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP025601.1_3126271_3127399_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP025601.1_3127395_3128304_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP025601.1_3128284_3128995_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP025601.1_3129004_3129379_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|816aa|down_8|NZ_CP025601.1_3129375_3131823_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP025601.1_3131819_3132542_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	13	3121894-3123608	9,6,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-A,Type III-C,Type III-D,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-A,TypeIII-C,TypeIII-D,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP025601.1_3112496_3112751_-,NA|135aa|up_8|NZ_CP025601.1_3112898_3113303_+,NA|64aa|up_7|NZ_CP025601.1_3113299_3113491_+,NA|86aa|up_5|NZ_CP025601.1_3115077_3115335_+,NA|104aa|up_4|NZ_CP025601.1_3115439_3115751_+,NA|203aa|up_3|NZ_CP025601.1_3116170_3116779_+,NA	NA|85aa|up_9|NZ_CP025601.1_3112496_3112751_-	NA	NA|135aa|up_8|NZ_CP025601.1_3112898_3113303_+	NA	NA|64aa|up_7|NZ_CP025601.1_3113299_3113491_+	NA	NA|385aa|up_6|NZ_CP025601.1_3113689_3114844_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP025601.1_3115077_3115335_+	NA	NA|104aa|up_4|NZ_CP025601.1_3115439_3115751_+	NA	NA|203aa|up_3|NZ_CP025601.1_3116170_3116779_+	NA	NA|470aa|up_2|NZ_CP025601.1_3116849_3118259_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP025601.1_3118255_3119068_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP025601.1_3120597_3121859_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP025601.1_3123656_3123998_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP025601.1_3123998_3125015_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP025601.1_3125027_3126176_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP025601.1_3126271_3127399_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP025601.1_3127395_3128304_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP025601.1_3128284_3128995_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP025601.1_3129004_3129379_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|816aa|down_7|NZ_CP025601.1_3129375_3131823_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP025601.1_3131819_3132542_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP025601.1_3132941_3133487_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	14	3740728-3741497	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP025601.1_3755370_3755658_-,NA|87aa|down_9|NZ_CP025601.1_3768778_3769039_-	NA|147aa|up_9|NZ_CP025601.1_3721299_3721740_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP025601.1_3721773_3722643_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP025601.1_3722663_3723674_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_6|NZ_CP025601.1_3723958_3724591_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP025601.1_3724657_3725887_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP025601.1_3726169_3727519_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP025601.1_3727530_3728670_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP025601.1_3728666_3729398_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_1|NZ_CP025601.1_3729406_3736978_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_CP025601.1_3737026_3738043_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP025601.1_3743240_3743498_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP025601.1_3743753_3753227_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP025601.1_3753852_3754299_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP025601.1_3754335_3755076_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP025601.1_3755370_3755658_-	NA	NA|3717aa|down_5|NZ_CP025601.1_3755994_3767145_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP025601.1_3767388_3768183_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP025601.1_3768264_3768636_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP025601.1_3768533_3768752_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP025601.1_3768778_3769039_-	NA
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	15	3948426-3950178	8	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGCACCGGCGGCNNCGGCGGNNNCGGCGGC	37	2	8	3949018-3949052|3949018-3949052|3949018-3949052|3949018-3949052|3949018-3949052|3949909-3949934|3949909-3949934|3949909-3949934	NZ_CP025601.1_3947476-3947510|NZ_CP025601.1_3948067-3948101|NZ_CP025601.1_3947125-3947159|NZ_CP025601.1_3948418-3948452|NZ_CP025601.1_3932850-3932884|NZ_CP025601.1_3941303-3941328|NZ_CP025601.1_3941639-3941664|NZ_CP025601.1_3941984-3942009	NA	21	21	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NZ_CP025601.1_3953492_3954332_+	NA|64aa|up_9|NZ_CP025601.1_3922109_3922301_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_8|NZ_CP025601.1_3922515_3923718_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_7|NZ_CP025601.1_3923742_3924864_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|503aa|up_6|NZ_CP025601.1_3924934_3926443_+	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|1382aa|up_5|NZ_CP025601.1_3926613_3930759_+	pfam00934, PE, PE family	NA|1902aa|up_4|NZ_CP025601.1_3931049_3936755_+	pfam00934, PE, PE family	NA|516aa|up_3|NZ_CP025601.1_3936921_3938469_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_2|NZ_CP025601.1_3938465_3939302_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|1782aa|up_1|NZ_CP025601.1_3939661_3945007_+	pfam00934, PE, PE family	NA|219aa|up_0|NZ_CP025601.1_3945135_3945792_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NZ_CP025601.1_3950885_3952532_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NZ_CP025601.1_3952605_3953397_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NZ_CP025601.1_3953492_3954332_+	NA	NA|399aa|down_3|NZ_CP025601.1_3954386_3955583_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NZ_CP025601.1_3955611_3956322_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NZ_CP025601.1_3956386_3957430_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NZ_CP025601.1_3957582_3958494_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NZ_CP025601.1_3958509_3959574_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|395aa|down_8|NZ_CP025601.1_3959590_3960775_+	PRK08313, PRK08313, thiolase domain-containing protein	NA|344aa|down_9|NZ_CP025601.1_3960816_3961848_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD
GCF_002886335.1_ASM288633v1	NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	16	4110734-4110822	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP025601.1_4101320_4102091_-,NA|119aa|up_3|NZ_CP025601.1_4107225_4107582_+,NA|52aa|up_2|NZ_CP025601.1_4107681_4107837_+,NA|233aa|up_0|NZ_CP025601.1_4109838_4110537_-,NA|126aa|down_6|NZ_CP025601.1_4116057_4116435_+	NA|288aa|up_9|NZ_CP025601.1_4099702_4100566_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP025601.1_4101320_4102091_-	NA	NA|549aa|up_7|NZ_CP025601.1_4102087_4103734_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP025601.1_4103730_4104594_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP025601.1_4104586_4105513_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP025601.1_4105514_4107140_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP025601.1_4107225_4107582_+	NA	NA|52aa|up_2|NZ_CP025601.1_4107681_4107837_+	NA	NA|652aa|up_1|NZ_CP025601.1_4107847_4109803_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP025601.1_4109838_4110537_-	NA	NA|173aa|down_0|NZ_CP025601.1_4110882_4111401_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP025601.1_4111401_4112385_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP025601.1_4112377_4113571_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP025601.1_4113576_4114398_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP025601.1_4114529_4115213_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP025601.1_4115212_4115950_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP025601.1_4116057_4116435_+	NA	NA|225aa|down_7|NZ_CP025601.1_4116533_4117208_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP025601.1_4117313_4118108_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP025601.1_4118114_4118570_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
