The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	4411602	2941212	2976586	4411602	protease,transposase,tRNA,integrase,terminase,capsid,head	Tupanvirus(11.11%)	41	2970013:2970040	2981003:2981030
WP_003413486.1|2941212_2943291_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943399_2943627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943623_2945009_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945353_2945854_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945870_2946311_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946457_2947135_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947119_2947473_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947485_2947911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947907_2948582_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948659_2949481_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949616_2950510_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950512_2951331_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951345_2952527_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952585_2953017_-	CBS domain-containing protein	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953530_2954772_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2955081_2955444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955790_2956915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956916_2957456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957595_2958894_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958932_2959214_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959358_2959844_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959870_2960128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960128_2962465_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962493_2962736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962736_2963414_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2963609_2964266_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964428_2964875_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965049_2965382_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965501_2965861_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965962_2966421_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966556_2966937_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966933_2968430_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968619_2968856_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968928_2969102_+	hypothetical protein	NA	NA	NA	NA	NA
2970013:2970040	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970146_2970578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970574_2971573_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971586_2972051_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972183_2973444_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003899411.1|2973818_2975258_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975265_2975799_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2975959_2976586_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2981003:2981030	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025601	Mycobacterium tuberculosis strain GG-90-10 chromosome, complete genome	4411602	3710475	3796413	4411602	transposase,tRNA	Burkholderia_virus(28.57%)	59	NA	NA
WP_087902221.1|3710475_3711736_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711791_3711953_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711974_3713504_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713436_3714375_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714383_3715751_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715819_3717037_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717132_3718641_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718637_3719789_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719979_3720825_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721299_3721740_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721773_3722643_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722663_3723674_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723958_3724591_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724657_3725887_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3726169_3727519_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727530_3728670_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728666_3729398_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_102762147.1|3729406_3736978_-	PPE family protein	NA	NA	NA	NA	NA
WP_009938644.1|3737026_3738043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158649201.1|3738200_3742817_-	PE domain-containing protein	NA	NA	NA	NA	NA
WP_003417619.1|3743240_3743498_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3743753_3753227_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753852_3754299_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754335_3755076_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755370_3755658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755994_3767145_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767388_3768183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768264_3768636_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768533_3768752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|3768778_3769039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|3769153_3769543_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769556_3769850_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769846_3770692_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770815_3771091_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771087_3771345_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|3771386_3772577_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772693_3773062_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3773058_3773610_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773616_3774198_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774178_3774547_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774524_3774917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774913_3777544_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777779_3778244_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|3778610_3780386_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780386_3781031_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3781029_3781464_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781552_3784792_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784983_3786324_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786365_3787541_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787594_3787699_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787777_3788419_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788419_3788668_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|3788672_3790100_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790207_3790861_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790899_3792405_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792409_3793300_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793308_3794919_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794863_3795109_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795151_3796413_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
