assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	1	334346-334682	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCCGCCGGCCCCGCCG	16	0	0	NA	NA	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP025595.1_333165_333348_-,NA	NA|398aa|up_9|NZ_CP025595.1_323343_324537_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP025595.1_324572_326255_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP025595.1_326271_328467_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP025595.1_328580_329714_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP025595.1_329710_330331_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP025595.1_330427_331009_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP025595.1_330938_331664_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP025595.1_331753_332674_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP025595.1_332713_333142_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP025595.1_333165_333348_-	NA	NA|537aa|down_0|NZ_CP025595.1_339368_340979_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP025595.1_341002_341911_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP025595.1_342134_344030_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP025595.1_344026_345643_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP025595.1_345639_349632_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP025595.1_349628_349937_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP025595.1_349939_351481_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP025595.1_351529_351823_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP025595.1_351852_352143_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP025595.1_352153_353041_+	pfam14011, ESX-1_EspG, EspG family
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	2	366468-367166	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366756-366797|366831-366863	NZ_CP025595.1_374787-374828|NZ_CP025595.1_373602-373634	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP025595.1_363480_363783_+,NA|161aa|down_1|NZ_CP025595.1_376576_377059_-,NA|410aa|down_5|NZ_CP025595.1_379175_380405_+	NA|401aa|up_9|NZ_CP025595.1_356866_358069_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|268aa|up_8|NZ_CP025595.1_358949_359753_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP025595.1_359762_361160_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP025595.1_361338_363114_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP025595.1_363256_363484_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP025595.1_363480_363783_+	NA	NA|74aa|up_3|NZ_CP025595.1_363830_364052_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP025595.1_364048_364474_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP025595.1_364609_365242_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP025595.1_365238_366147_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP025595.1_375917_376589_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP025595.1_376576_377059_-	NA	NA|239aa|down_2|NZ_CP025595.1_377116_377833_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP025595.1_377934_378591_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP025595.1_378660_379152_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP025595.1_379175_380405_+	NA	NA|621aa|down_6|NZ_CP025595.1_380559_382422_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP025595.1_382493_382880_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP025595.1_382882_383545_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP025595.1_383605_384490_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	3	631264-631401	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631282-631299|631282-631299|631366-631383	NZ_CP025595.1_22466-22483|NZ_CP025595.1_1412039-1412056|NZ_CP025595.1_973221-973238	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP025595.1_622102_622264_-,NA|478aa|up_0|NZ_CP025595.1_628279_629713_-,NA|450aa|down_2|NZ_CP025595.1_633036_634386_-,NA|93aa|down_5|NZ_CP025595.1_635916_636195_-	NA|325aa|up_9|NZ_CP025595.1_619872_620847_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP025595.1_620888_622106_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP025595.1_622102_622264_-	NA	NA|106aa|up_6|NZ_CP025595.1_622310_622628_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP025595.1_622774_624559_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP025595.1_624454_625462_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP025595.1_625543_626422_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP025595.1_626438_627233_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP025595.1_627229_628270_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP025595.1_628279_629713_-	NA	NA|211aa|down_0|NZ_CP025595.1_631724_632357_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP025595.1_632353_633016_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP025595.1_633036_634386_-	NA	NA|381aa|down_3|NZ_CP025595.1_634397_635540_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP025595.1_635554_635857_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP025595.1_635916_636195_-	NA	NA|418aa|down_6|NZ_CP025595.1_636191_637445_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP025595.1_637564_637951_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP025595.1_638013_638898_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP025595.1_638993_639896_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	4	692007-692083	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP025595.1_677691_677907_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP025595.1_677903_678311_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP025595.1_678370_679057_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP025595.1_679210_681844_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP025595.1_681866_684254_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP025595.1_684391_685114_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP025595.1_685110_685908_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP025595.1_685909_686797_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP025595.1_686802_688017_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP025595.1_689040_690486_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP025595.1_693218_694769_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP025595.1_694820_695213_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP025595.1_695209_695467_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP025595.1_695649_696885_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP025595.1_697135_697549_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP025595.1_697545_697782_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP025595.1_697885_698392_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP025595.1_698505_698976_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP025595.1_699019_699781_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP025595.1_699837_700149_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	5	926601-927548	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927384-927419|927384-927419|927384-927419	NZ_CP025595.1_675110-675075|NZ_CP025595.1_1213722-1213757|NZ_CP025595.1_2423760-2423725	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP025595.1_931549_932101_-,NA|81aa|down_8|NZ_CP025595.1_937564_937807_+	NA|685aa|up_9|NZ_CP025595.1_914237_916292_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP025595.1_916457_917627_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP025595.1_917714_918731_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP025595.1_918892_919534_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP025595.1_919614_920670_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP025595.1_920721_921114_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP025595.1_921171_921594_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP025595.1_921555_921846_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP025595.1_921950_922856_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP025595.1_922874_923690_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NZ_CP025595.1_927817_930457_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP025595.1_930924_931569_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP025595.1_931549_932101_-	NA	NA|218aa|down_3|NZ_CP025595.1_932250_932904_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP025595.1_932974_934003_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP025595.1_934691_935462_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP025595.1_935548_936361_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP025595.1_936428_937289_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP025595.1_937564_937807_+	NA	NA|431aa|down_9|NZ_CP025595.1_938083_939376_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	6	1191292-1191400	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP025595.1_1180659_1182291_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP025595.1_1182366_1183431_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP025595.1_1183483_1183957_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP025595.1_1183990_1184854_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP025595.1_1184858_1185716_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP025595.1_1185716_1186799_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP025595.1_1186879_1187299_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP025595.1_1187410_1187977_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP025595.1_1187973_1188369_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP025595.1_1188396_1190400_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP025595.1_1192485_1194249_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP025595.1_1194245_1195019_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP025595.1_1195030_1196068_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP025595.1_1196254_1197091_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP025595.1_1197206_1198058_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP025595.1_1198131_1199349_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP025595.1_1199401_1200346_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP025595.1_1200568_1201636_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP025595.1_1201692_1203087_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP025595.1_1203288_1204011_+	pfam06271, RDD, RDD family
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	7	1211926-1212782	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	71	1212309-1212330|1212354-1212369|1212492-1212513|1212492-1212513|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627|1212609-1212627	NZ_CP025595.1_2960545-2960524|NZ_CP025595.1_2088571-2088556|NZ_CP025595.1_837413-837434|NZ_CP025595.1_1217617-1217638|NZ_CP025595.1_1572800-1572782|NZ_CP025595.1_674774-674756|NZ_CP025595.1_1213452-1213470|NZ_CP025595.1_1217590-1217608|NZ_CP025595.1_1217662-1217680|NZ_CP025595.1_1630672-1630654|NZ_CP025595.1_1990785-1990767|NZ_CP025595.1_2802094-2802076|NZ_CP025595.1_2805622-2805604|NZ_CP025595.1_150188-150206|NZ_CP025595.1_333788-333770|NZ_CP025595.1_335207-335189|NZ_CP025595.1_335660-335642|NZ_CP025595.1_335711-335693|NZ_CP025595.1_335720-335702|NZ_CP025595.1_338008-337990|NZ_CP025595.1_338137-338119|NZ_CP025595.1_338404-338386|NZ_CP025595.1_338433-338451|NZ_CP025595.1_338527-338509|NZ_CP025595.1_363058-363040|NZ_CP025595.1_443432-443414|NZ_CP025595.1_546775-546757|NZ_CP025595.1_623965-623983|NZ_CP025595.1_624187-624205|NZ_CP025595.1_673940-673922|NZ_CP025595.1_840196-840214|NZ_CP025595.1_1090959-1090977|NZ_CP025595.1_1091607-1091625|NZ_CP025595.1_1212981-1212999|NZ_CP025595.1_1213371-1213389|NZ_CP025595.1_1218010-1218028|NZ_CP025595.1_1489183-1489165|NZ_CP025595.1_1618636-1618618|NZ_CP025595.1_1619089-1619071|NZ_CP025595.1_1636011-1635993|NZ_CP025595.1_1636020-1636002|NZ_CP025595.1_1864299-1864281|NZ_CP025595.1_1864827-1864809|NZ_CP025595.1_1990059-1990041|NZ_CP025595.1_2001421-2001439|NZ_CP025595.1_2088769-2088751|NZ_CP025595.1_2303483-2303465|NZ_CP025595.1_2356936-2356918|NZ_CP025595.1_2419586-2419604|NZ_CP025595.1_2423673-2423655|NZ_CP025595.1_2569167-2569149|NZ_CP025595.1_2693463-2693481|NZ_CP025595.1_2795408-2795390|NZ_CP025595.1_2795990-2795972|NZ_CP025595.1_3054581-3054599|NZ_CP025595.1_3054680-3054698|NZ_CP025595.1_3705516-3705534|NZ_CP025595.1_3737493-3737475|NZ_CP025595.1_3738117-3738099|NZ_CP025595.1_3738360-3738342|NZ_CP025595.1_3738493-3738475|NZ_CP025595.1_3802344-3802362|NZ_CP025595.1_3802527-3802545|NZ_CP025595.1_3802695-3802713|NZ_CP025595.1_3930503-3930521|NZ_CP025595.1_3932233-3932251|NZ_CP025595.1_3934853-3934871|NZ_CP025595.1_3940732-3940750|NZ_CP025595.1_3948726-3948744|NZ_CP025595.1_4031706-4031688|NZ_CP025595.1_4094231-4094249	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP025595.1_1207358_1207625_+,NA|61aa|down_3|NZ_CP025595.1_1215197_1215380_+,NA|35aa|down_4|NZ_CP025595.1_1215489_1215594_+	NA|465aa|up_9|NZ_CP025595.1_1201692_1203087_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP025595.1_1203288_1204011_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP025595.1_1204042_1205209_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP025595.1_1205279_1205774_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP025595.1_1205959_1206394_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_4|NZ_CP025595.1_1206495_1207362_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP025595.1_1207358_1207625_+	NA	NA|674aa|up_2|NZ_CP025595.1_1207611_1209633_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP025595.1_1209731_1210460_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP025595.1_1210570_1211359_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP025595.1_1214012_1214333_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP025595.1_1214485_1214920_+	pfam00934, PE, PE family	NA|56aa|down_2|NZ_CP025595.1_1215018_1215186_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP025595.1_1215197_1215380_+	NA	NA|35aa|down_4|NZ_CP025595.1_1215489_1215594_+	NA	NA|152aa|down_5|NZ_CP025595.1_1215571_1216027_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP025595.1_1216441_1219003_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP025595.1_1219220_1220159_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP025595.1_1220546_1221827_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP025595.1_1221931_1222759_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	8	2061109-2062209	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNNCC	20	0	0	NA	NA	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|222aa|up_2|NZ_CP025595.1_2057488_2058154_+,NA	NA|410aa|up_9|NZ_CP025595.1_2049881_2051111_+	pfam00823, PPE, PPE family	NA|469aa|up_8|NZ_CP025595.1_2051242_2052649_+	pfam00823, PPE, PPE family	NA|119aa|up_7|NZ_CP025595.1_2052893_2053250_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|up_6|NZ_CP025595.1_2053403_2054108_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|up_5|NZ_CP025595.1_2054117_2055320_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|up_4|NZ_CP025595.1_2055641_2056073_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|301aa|up_3|NZ_CP025595.1_2056481_2057384_+	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|222aa|up_2|NZ_CP025595.1_2057488_2058154_+	NA	NA|235aa|up_1|NZ_CP025595.1_2058216_2058921_+	pfam13305, WHG, WHG domain	NA|488aa|up_0|NZ_CP025595.1_2059555_2061019_+	PRK07121, PRK07121, FAD-binding protein	NA|640aa|down_0|NZ_CP025595.1_2062760_2064680_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|548aa|down_1|NZ_CP025595.1_2064750_2066394_+	PRK05858, PRK05858, acetolactate synthase	NA|809aa|down_2|NZ_CP025595.1_2066408_2068835_+	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|210aa|down_3|NZ_CP025595.1_2069031_2069661_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|308aa|down_4|NZ_CP025595.1_2069653_2070577_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_5|NZ_CP025595.1_2070638_2070971_+	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|293aa|down_6|NZ_CP025595.1_2070987_2071866_+	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_7|NZ_CP025595.1_2071903_2072308_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|163aa|down_8|NZ_CP025595.1_2072547_2073036_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|248aa|down_9|NZ_CP025595.1_2073032_2073776_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	9	2088241-2088495	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088322-2088339|2088322-2088339|2088412-2088429	NZ_CP025595.1_401083-401066|NZ_CP025595.1_607420-607403|NZ_CP025595.1_3450204-3450187	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025595.1_2087600_2087864_-,NA	NA|165aa|up_9|NZ_CP025595.1_2073894_2074389_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP025595.1_2074792_2075470_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP025595.1_2075828_2078654_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP025595.1_2078880_2079741_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP025595.1_2079781_2080648_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP025595.1_2080652_2082539_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP025595.1_2082554_2084588_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025595.1_2084707_2086933_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025595.1_2087208_2087604_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025595.1_2087600_2087864_-	NA	NA|346aa|down_0|NZ_CP025595.1_2089632_2090670_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025595.1_2090669_2092037_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP025595.1_2092210_2093647_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP025595.1_2093682_2095134_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025595.1_2095163_2096114_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025595.1_2096128_2096545_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025595.1_2096822_2097245_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025595.1_2097293_2097596_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025595.1_2097592_2097907_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025595.1_2097906_2099640_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	10	2163348-2163452	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CAACCCAAACGGATTAATCGCGAAACCAGGGATCGT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NZ_CP025595.1_2159892_2160300_-,NA|127aa|down_6|NZ_CP025595.1_2176521_2176902_-	NA|216aa|up_9|NZ_CP025595.1_2153206_2153854_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NZ_CP025595.1_2153860_2156083_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NZ_CP025595.1_2156120_2156564_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NZ_CP025595.1_2156677_2157271_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NZ_CP025595.1_2157353_2157959_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NZ_CP025595.1_2158058_2159063_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NZ_CP025595.1_2159162_2159915_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NZ_CP025595.1_2159892_2160300_-	NA	NA|368aa|up_1|NZ_CP025595.1_2160434_2161538_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_0|NZ_CP025595.1_2161537_2162734_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|988aa|down_0|NZ_CP025595.1_2167620_2170584_-	pfam00823, PPE, PPE family	NA|155aa|down_1|NZ_CP025595.1_2171032_2171497_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_2|NZ_CP025595.1_2171594_2172458_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_3|NZ_CP025595.1_2172495_2173767_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_4|NZ_CP025595.1_2174038_2175154_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_5|NZ_CP025595.1_2175144_2176485_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_6|NZ_CP025595.1_2176521_2176902_-	NA	NA|621aa|down_7|NZ_CP025595.1_2177058_2178921_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_8|NZ_CP025595.1_2178928_2179408_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_9|NZ_CP025595.1_2179644_2180418_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	11	2168786-2169005	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP025595.1_2159892_2160300_-,NA|127aa|down_5|NZ_CP025595.1_2176521_2176902_-	NA|741aa|up_9|NZ_CP025595.1_2153860_2156083_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP025595.1_2156120_2156564_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP025595.1_2156677_2157271_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP025595.1_2157353_2157959_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP025595.1_2158058_2159063_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP025595.1_2159162_2159915_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP025595.1_2159892_2160300_-	NA	NA|368aa|up_2|NZ_CP025595.1_2160434_2161538_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP025595.1_2161537_2162734_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP025595.1_2162903_2167283_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP025595.1_2171032_2171497_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP025595.1_2171594_2172458_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP025595.1_2172495_2173767_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP025595.1_2174038_2175154_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP025595.1_2175144_2176485_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP025595.1_2176521_2176902_-	NA	NA|621aa|down_6|NZ_CP025595.1_2177058_2178921_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP025595.1_2178928_2179408_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP025595.1_2179644_2180418_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP025595.1_2180421_2181189_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	12	3119172-3120526	2,7,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	16,17,18	18	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP025595.1_3112451_3112706_-,NA|135aa|up_7|NZ_CP025595.1_3112853_3113258_+,NA|64aa|up_6|NZ_CP025595.1_3113254_3113446_+,NA|86aa|up_4|NZ_CP025595.1_3115032_3115290_+,NA|104aa|up_3|NZ_CP025595.1_3115394_3115706_+,NA|203aa|up_2|NZ_CP025595.1_3116125_3116734_+,NA	NA|92aa|up_9|NZ_CP025595.1_3112000_3112276_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP025595.1_3112451_3112706_-	NA	NA|135aa|up_7|NZ_CP025595.1_3112853_3113258_+	NA	NA|64aa|up_6|NZ_CP025595.1_3113254_3113446_+	NA	NA|385aa|up_5|NZ_CP025595.1_3113644_3114799_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP025595.1_3115032_3115290_+	NA	NA|104aa|up_3|NZ_CP025595.1_3115394_3115706_+	NA	NA|203aa|up_2|NZ_CP025595.1_3116125_3116734_+	NA	NA|470aa|up_1|NZ_CP025595.1_3116804_3118214_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP025595.1_3118210_3119023_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP025595.1_3120552_3121814_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP025595.1_3123616_3123958_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP025595.1_3123958_3124975_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP025595.1_3124987_3126136_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP025595.1_3126231_3127359_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP025595.1_3127355_3128264_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP025595.1_3128244_3128955_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP025595.1_3128964_3129339_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP025595.1_3129335_3131774_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP025595.1_3131770_3132493_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	13	3121849-3123568	8,6,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-C,Type III-B,Type III-A	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	23,23,22	23	TypeIII-D,TypeIII-C,TypeIII-B,TypeIII-A	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP025595.1_3112451_3112706_-,NA|135aa|up_8|NZ_CP025595.1_3112853_3113258_+,NA|64aa|up_7|NZ_CP025595.1_3113254_3113446_+,NA|86aa|up_5|NZ_CP025595.1_3115032_3115290_+,NA|104aa|up_4|NZ_CP025595.1_3115394_3115706_+,NA|203aa|up_3|NZ_CP025595.1_3116125_3116734_+,NA	NA|85aa|up_9|NZ_CP025595.1_3112451_3112706_-	NA	NA|135aa|up_8|NZ_CP025595.1_3112853_3113258_+	NA	NA|64aa|up_7|NZ_CP025595.1_3113254_3113446_+	NA	NA|385aa|up_6|NZ_CP025595.1_3113644_3114799_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP025595.1_3115032_3115290_+	NA	NA|104aa|up_4|NZ_CP025595.1_3115394_3115706_+	NA	NA|203aa|up_3|NZ_CP025595.1_3116125_3116734_+	NA	NA|470aa|up_2|NZ_CP025595.1_3116804_3118214_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP025595.1_3118210_3119023_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP025595.1_3120552_3121814_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP025595.1_3123616_3123958_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP025595.1_3123958_3124975_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP025595.1_3124987_3126136_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP025595.1_3126231_3127359_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP025595.1_3127355_3128264_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP025595.1_3128244_3128955_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP025595.1_3128964_3129339_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP025595.1_3129335_3131774_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP025595.1_3131770_3132493_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP025595.1_3132892_3133438_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	14	3740687-3741228	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP025595.1_3755320_3755608_-,NA|87aa|down_9|NZ_CP025595.1_3768728_3768989_-	NA|282aa|up_9|NZ_CP025595.1_3719938_3720784_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|147aa|up_8|NZ_CP025595.1_3721258_3721699_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_7|NZ_CP025595.1_3721732_3722602_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_6|NZ_CP025595.1_3722622_3723633_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_5|NZ_CP025595.1_3723917_3724550_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_4|NZ_CP025595.1_3724616_3725846_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_3|NZ_CP025595.1_3726128_3727478_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_2|NZ_CP025595.1_3727489_3728629_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_1|NZ_CP025595.1_3728625_3729357_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_0|NZ_CP025595.1_3729365_3736937_-	pfam00823, PPE, PPE family	NA|86aa|down_0|NZ_CP025595.1_3743190_3743448_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP025595.1_3743703_3753177_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP025595.1_3753802_3754249_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP025595.1_3754285_3755026_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP025595.1_3755320_3755608_-	NA	NA|3717aa|down_5|NZ_CP025595.1_3755944_3767095_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP025595.1_3767338_3768133_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP025595.1_3768214_3768586_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP025595.1_3768483_3768702_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP025595.1_3768728_3768989_-	NA
GCF_002886195.1_ASM288619v1	NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	15	4110648-4110736	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP025595.1_4101234_4102005_-,NA|119aa|up_3|NZ_CP025595.1_4107139_4107496_+,NA|52aa|up_2|NZ_CP025595.1_4107595_4107751_+,NA|233aa|up_0|NZ_CP025595.1_4109752_4110451_-,NA|126aa|down_6|NZ_CP025595.1_4115971_4116349_+	NA|288aa|up_9|NZ_CP025595.1_4099616_4100480_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP025595.1_4101234_4102005_-	NA	NA|549aa|up_7|NZ_CP025595.1_4102001_4103648_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP025595.1_4103644_4104508_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP025595.1_4104500_4105427_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP025595.1_4105428_4107054_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP025595.1_4107139_4107496_+	NA	NA|52aa|up_2|NZ_CP025595.1_4107595_4107751_+	NA	NA|652aa|up_1|NZ_CP025595.1_4107761_4109717_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP025595.1_4109752_4110451_-	NA	NA|173aa|down_0|NZ_CP025595.1_4110796_4111315_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP025595.1_4111315_4112299_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP025595.1_4112291_4113485_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP025595.1_4113490_4114312_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP025595.1_4114443_4115127_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP025595.1_4115126_4115864_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP025595.1_4115971_4116349_+	NA	NA|225aa|down_7|NZ_CP025595.1_4116447_4117122_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP025595.1_4117227_4118022_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP025595.1_4118028_4118484_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
