The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	4411504	2941175	2976541	4411504	terminase,capsid,integrase,head,tRNA,transposase,protease	Tupanvirus(11.11%)	42	2969976:2970003	2980958:2980985
WP_003413486.1|2941175_2943254_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2943362_2943590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2943586_2944972_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2945316_2945817_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2945833_2946274_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2946420_2947098_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2947082_2947436_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2947448_2947874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2947870_2948545_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2948622_2949444_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2949579_2950473_+	universal stress protein	NA	NA	NA	NA	NA
WP_003413594.1|2950475_2951294_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2951308_2952490_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2952548_2952980_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2953493_2954735_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_085976157.1|2955149_2955407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2955753_2956878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2956879_2957419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413616.1|2957558_2958857_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2958895_2959177_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2959321_2959807_-	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_003902325.1|2959833_2960091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2960091_2962428_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2962456_2962699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2962699_2963377_+	membrane protein	NA	NA	NA	NA	NA
WP_012054325.1|2963572_2964229_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2964391_2964838_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2965012_2965345_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2965464_2965824_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2965925_2966384_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2966519_2966900_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2966896_2968393_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_085972563.1|2968582_2968819_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
WP_077365235.1|2968891_2969065_+	hypothetical protein	NA	NA	NA	NA	NA
2969976:2970003	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2970109_2970541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2970537_2971536_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2971549_2972014_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|2972146_2973407_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935348.1|2973434_2973620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899411.1|2973781_2975221_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2975228_2975762_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_072464513.1|2975914_2976541_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
2980958:2980985	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP025595	Mycobacterium tuberculosis strain GG-20-11 chromosome, complete genome	4411504	3710434	3796354	4411504	tRNA,transposase	Burkholderia_virus(28.57%)	57	NA	NA
WP_087902221.1|3710434_3711695_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3711750_3711912_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3711933_3713463_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3713395_3714334_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003902446.1|3714342_3715710_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3715778_3716996_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3717091_3718600_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3718596_3719748_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3719938_3720784_-	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003900026.1|3721258_3721699_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3721732_3722602_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3722622_3723633_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009940431.1|3723917_3724550_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3724616_3725846_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_102770716.1|3726128_3727478_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3727489_3728629_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3728625_3729357_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_102770717.1|3729365_3736937_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3743190_3743448_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_102770718.1|3743703_3753177_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3753802_3754249_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|3754285_3755026_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|3755320_3755608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|3755944_3767095_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|3767338_3768133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417739.1|3768214_3768586_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|3768483_3768702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102770734.1|3768728_3768989_-	oxidoreductase	NA	NA	NA	NA	NA
WP_003417745.1|3769103_3769493_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|3769506_3769800_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|3769796_3770642_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|3770765_3771041_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_003417760.1|3771037_3771295_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_012054356.1|3771336_3772527_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|3772643_3773012_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|3773008_3773560_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|3773566_3774148_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|3774128_3774497_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|3774474_3774867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003907034.1|3774863_3777494_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003417878.1|3777729_3778194_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_010886167.1|3778560_3780327_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|3780327_3780972_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|3780970_3781405_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|3781493_3784733_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|3784924_3786265_+	wax ester/triacylglycerol synthase family O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|3786306_3787482_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|3787535_3787640_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|3787718_3788360_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|3788360_3788609_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_012054357.1|3788613_3790041_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|3790148_3790802_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|3790840_3792346_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|3792350_3793241_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|3793249_3794860_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|3794804_3795050_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|3795092_3796354_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
