assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	1	335382-335945	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGGCNCCGCCGNNGCCG	21	3	3	335793-335816|335838-335870|335892-335924	NZ_CP025594.1_338573-338596|NZ_CP025594.1_338600-338632|NZ_CP025594.1_338654-338686	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NZ_CP025594.1_333156_333339_-,NA	NA|398aa|up_9|NZ_CP025594.1_323334_324528_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP025594.1_324563_326246_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP025594.1_326262_328458_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP025594.1_328571_329705_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP025594.1_329701_330322_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP025594.1_330418_331000_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP025594.1_330929_331655_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP025594.1_331744_332665_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP025594.1_332704_333133_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NZ_CP025594.1_333156_333339_-	NA	NA|537aa|down_0|NZ_CP025594.1_339350_340961_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP025594.1_340984_341893_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP025594.1_342116_344012_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP025594.1_344008_345625_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP025594.1_345621_349614_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP025594.1_349610_349919_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP025594.1_349921_351463_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP025594.1_351511_351805_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP025594.1_351834_352125_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP025594.1_352135_353023_+	pfam14011, ESX-1_EspG, EspG family
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	2	338091-338313	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NZ_CP025594.1_333156_333339_-,NA	NA|561aa|up_9|NZ_CP025594.1_324563_326246_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NZ_CP025594.1_326262_328458_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NZ_CP025594.1_328571_329705_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NZ_CP025594.1_329701_330322_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NZ_CP025594.1_330418_331000_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NZ_CP025594.1_330929_331655_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NZ_CP025594.1_331744_332665_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NZ_CP025594.1_332704_333133_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NZ_CP025594.1_333156_333339_-	NA	NA|955aa|up_0|NZ_CP025594.1_333433_336298_-	pfam00934, PE, PE family	NA|537aa|down_0|NZ_CP025594.1_339350_340961_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NZ_CP025594.1_340984_341893_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NZ_CP025594.1_342116_344012_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NZ_CP025594.1_344008_345625_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NZ_CP025594.1_345621_349614_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NZ_CP025594.1_349610_349919_+	pfam00934, PE, PE family	NA|514aa|down_6|NZ_CP025594.1_349921_351463_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NZ_CP025594.1_351511_351805_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NZ_CP025594.1_351834_352125_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NZ_CP025594.1_352135_353023_+	pfam14011, ESX-1_EspG, EspG family
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	3	366450-367148	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366738-366779|366813-366845	NZ_CP025594.1_374769-374810|NZ_CP025594.1_373584-373616	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP025594.1_363462_363765_+,NA|161aa|down_1|NZ_CP025594.1_376558_377041_-,NA|410aa|down_5|NZ_CP025594.1_379157_380387_+	NA|262aa|up_9|NZ_CP025594.1_358157_358943_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP025594.1_358931_359735_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP025594.1_359744_361142_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP025594.1_361320_363096_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP025594.1_363238_363466_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP025594.1_363462_363765_+	NA	NA|74aa|up_3|NZ_CP025594.1_363812_364034_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP025594.1_364030_364456_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP025594.1_364591_365224_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP025594.1_365220_366129_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP025594.1_375899_376571_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP025594.1_376558_377041_-	NA	NA|239aa|down_2|NZ_CP025594.1_377098_377815_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP025594.1_377916_378573_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP025594.1_378642_379134_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP025594.1_379157_380387_+	NA	NA|621aa|down_6|NZ_CP025594.1_380541_382404_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP025594.1_382475_382862_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP025594.1_382864_383527_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP025594.1_383587_384472_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	4	631245-631382	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631263-631280|631263-631280|631347-631364	NZ_CP025594.1_22465-22482|NZ_CP025594.1_1412001-1412018|NZ_CP025594.1_973213-973230	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP025594.1_622083_622245_-,NA|478aa|up_0|NZ_CP025594.1_628260_629694_-,NA|450aa|down_2|NZ_CP025594.1_633017_634367_-,NA|93aa|down_5|NZ_CP025594.1_635897_636176_-	NA|325aa|up_9|NZ_CP025594.1_619853_620828_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP025594.1_620869_622087_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP025594.1_622083_622245_-	NA	NA|106aa|up_6|NZ_CP025594.1_622291_622609_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|595aa|up_5|NZ_CP025594.1_622755_624540_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP025594.1_624435_625443_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP025594.1_625524_626403_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP025594.1_626419_627214_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP025594.1_627210_628251_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP025594.1_628260_629694_-	NA	NA|211aa|down_0|NZ_CP025594.1_631705_632338_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP025594.1_632334_632997_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP025594.1_633017_634367_-	NA	NA|381aa|down_3|NZ_CP025594.1_634378_635521_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP025594.1_635535_635838_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP025594.1_635897_636176_-	NA	NA|418aa|down_6|NZ_CP025594.1_636172_637426_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP025594.1_637545_637932_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP025594.1_637994_638879_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NZ_CP025594.1_638974_639877_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	5	691988-692064	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP025594.1_677672_677888_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP025594.1_677884_678292_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP025594.1_678351_679038_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP025594.1_679191_681825_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP025594.1_681847_684235_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP025594.1_684372_685095_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP025594.1_685091_685889_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP025594.1_685890_686778_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP025594.1_686783_687998_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP025594.1_689021_690467_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP025594.1_693199_694750_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP025594.1_694801_695194_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP025594.1_695190_695448_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP025594.1_695630_696866_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP025594.1_697116_697530_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP025594.1_697526_697763_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP025594.1_697866_698373_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP025594.1_698486_698957_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP025594.1_699000_699762_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP025594.1_699818_700130_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	6	926584-927531	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	927367-927402|927367-927402|927367-927402	NZ_CP025594.1_675091-675056|NZ_CP025594.1_1213705-1213740|NZ_CP025594.1_2423745-2423710	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP025594.1_931541_932093_-,NA|81aa|down_8|NZ_CP025594.1_937556_937799_+	NA|685aa|up_9|NZ_CP025594.1_914220_916275_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP025594.1_916440_917610_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP025594.1_917697_918714_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP025594.1_918875_919517_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP025594.1_919597_920653_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP025594.1_920704_921097_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP025594.1_921154_921577_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP025594.1_921538_921829_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP025594.1_921933_922839_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP025594.1_922857_923673_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP025594.1_927800_930449_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP025594.1_930916_931561_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP025594.1_931541_932093_-	NA	NA|218aa|down_3|NZ_CP025594.1_932242_932896_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NZ_CP025594.1_932966_933995_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NZ_CP025594.1_934683_935454_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NZ_CP025594.1_935540_936353_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NZ_CP025594.1_936420_937281_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NZ_CP025594.1_937556_937799_+	NA	NA|431aa|down_9|NZ_CP025594.1_938075_939368_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	7	1191290-1191398	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP025594.1_1180657_1182289_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP025594.1_1182364_1183429_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP025594.1_1183481_1183955_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP025594.1_1183988_1184852_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP025594.1_1184856_1185714_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP025594.1_1185714_1186797_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP025594.1_1186877_1187297_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP025594.1_1187408_1187975_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP025594.1_1187971_1188367_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP025594.1_1188394_1190398_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP025594.1_1192483_1194247_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP025594.1_1194243_1195017_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP025594.1_1195028_1196066_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP025594.1_1196252_1197089_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP025594.1_1197204_1198056_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP025594.1_1198129_1199347_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP025594.1_1199399_1200344_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|356aa|down_7|NZ_CP025594.1_1200566_1201634_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP025594.1_1201690_1203085_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP025594.1_1203286_1204009_+	pfam06271, RDD, RDD family
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	8	1211924-1212852	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	5	74	1212289-1212310|1212334-1212349|1212472-1212493|1212472-1212493|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212589-1212607|1212763-1212784|1212763-1212784|1212763-1212784|1212763-1212784	NZ_CP025594.1_2960509-2960488|NZ_CP025594.1_2088565-2088550|NZ_CP025594.1_837397-837418|NZ_CP025594.1_1217601-1217622|NZ_CP025594.1_674755-674737|NZ_CP025594.1_1213432-1213450|NZ_CP025594.1_1217574-1217592|NZ_CP025594.1_1217646-1217664|NZ_CP025594.1_1630633-1630615|NZ_CP025594.1_1633459-1633441|NZ_CP025594.1_1990769-1990751|NZ_CP025594.1_2061493-2061475|NZ_CP025594.1_2061940-2061922|NZ_CP025594.1_2062039-2062021|NZ_CP025594.1_2802058-2802040|NZ_CP025594.1_2805586-2805568|NZ_CP025594.1_150182-150200|NZ_CP025594.1_333779-333761|NZ_CP025594.1_335198-335180|NZ_CP025594.1_337990-337972|NZ_CP025594.1_338386-338368|NZ_CP025594.1_338415-338433|NZ_CP025594.1_338509-338491|NZ_CP025594.1_363040-363022|NZ_CP025594.1_443414-443396|NZ_CP025594.1_546756-546738|NZ_CP025594.1_623946-623964|NZ_CP025594.1_624168-624186|NZ_CP025594.1_673921-673903|NZ_CP025594.1_840180-840198|NZ_CP025594.1_1090954-1090972|NZ_CP025594.1_1091602-1091620|NZ_CP025594.1_1095659-1095641|NZ_CP025594.1_1212961-1212979|NZ_CP025594.1_1213351-1213369|NZ_CP025594.1_1217994-1218012|NZ_CP025594.1_1489145-1489127|NZ_CP025594.1_1618597-1618579|NZ_CP025594.1_1619050-1619032|NZ_CP025594.1_1635972-1635954|NZ_CP025594.1_1635981-1635963|NZ_CP025594.1_1864260-1864242|NZ_CP025594.1_1864788-1864770|NZ_CP025594.1_1990043-1990025|NZ_CP025594.1_2001405-2001423|NZ_CP025594.1_2088763-2088745|NZ_CP025594.1_2303461-2303443|NZ_CP025594.1_2356913-2356895|NZ_CP025594.1_2419571-2419589|NZ_CP025594.1_2423658-2423640|NZ_CP025594.1_2569152-2569134|NZ_CP025594.1_2693449-2693467|NZ_CP025594.1_2795373-2795355|NZ_CP025594.1_2795955-2795937|NZ_CP025594.1_3054545-3054563|NZ_CP025594.1_3054644-3054662|NZ_CP025594.1_3705452-3705470|NZ_CP025594.1_3737429-3737411|NZ_CP025594.1_3738053-3738035|NZ_CP025594.1_3738296-3738278|NZ_CP025594.1_3738429-3738411|NZ_CP025594.1_3802298-3802316|NZ_CP025594.1_3802481-3802499|NZ_CP025594.1_3802649-3802667|NZ_CP025594.1_3930436-3930454|NZ_CP025594.1_3932166-3932184|NZ_CP025594.1_3940673-3940691|NZ_CP025594.1_3948668-3948686|NZ_CP025594.1_4031652-4031634|NZ_CP025594.1_4094169-4094187|NZ_CP025594.1_623838-623859|NZ_CP025594.1_37061-37040|NZ_CP025594.1_132094-132115|NZ_CP025594.1_2922260-2922281	NA	18	18	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_3|NZ_CP025594.1_1207356_1207623_+,NA|61aa|down_3|NZ_CP025594.1_1215181_1215364_+,NA|35aa|down_4|NZ_CP025594.1_1215473_1215578_+	NA|465aa|up_9|NZ_CP025594.1_1201690_1203085_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|up_8|NZ_CP025594.1_1203286_1204009_+	pfam06271, RDD, RDD family	NA|389aa|up_7|NZ_CP025594.1_1204040_1205207_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_6|NZ_CP025594.1_1205277_1205772_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_5|NZ_CP025594.1_1205957_1206392_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|296aa|up_4|NZ_CP025594.1_1206493_1207381_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_3|NZ_CP025594.1_1207356_1207623_+	NA	NA|674aa|up_2|NZ_CP025594.1_1207609_1209631_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_1|NZ_CP025594.1_1209729_1210458_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_0|NZ_CP025594.1_1210568_1211357_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|107aa|down_0|NZ_CP025594.1_1213996_1214317_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP025594.1_1214469_1214904_+	pfam00934, PE, PE family	NA|55aa|down_2|NZ_CP025594.1_1215005_1215170_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP025594.1_1215181_1215364_+	NA	NA|35aa|down_4|NZ_CP025594.1_1215473_1215578_+	NA	NA|152aa|down_5|NZ_CP025594.1_1215555_1216011_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|854aa|down_6|NZ_CP025594.1_1216425_1218987_+	pfam00934, PE, PE family	NA|313aa|down_7|NZ_CP025594.1_1219204_1220143_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_8|NZ_CP025594.1_1220530_1221811_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_9|NZ_CP025594.1_1221915_1222743_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	9	1572120-1573192	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|106aa|up_7|NZ_CP025594.1_1563883_1564201_+,NA	NA|103aa|up_9|NZ_CP025594.1_1561398_1561707_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP025594.1_1561703_1563323_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|106aa|up_7|NZ_CP025594.1_1563883_1564201_+	NA	NA|209aa|up_6|NZ_CP025594.1_1564335_1564962_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP025594.1_1565027_1565360_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP025594.1_1565375_1566632_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP025594.1_1566759_1567971_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP025594.1_1568043_1569522_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP025594.1_1569518_1570904_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP025594.1_1570981_1572016_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP025594.1_1574046_1574448_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP025594.1_1574444_1574702_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP025594.1_1574784_1575744_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP025594.1_1575768_1576731_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP025594.1_1576864_1577467_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP025594.1_1577547_1579515_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP025594.1_1579532_1580357_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP025594.1_1580525_1581008_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP025594.1_1581079_1581904_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP025594.1_1582100_1583039_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	10	2088235-2088489	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2088316-2088333|2088316-2088333|2088406-2088423	NZ_CP025594.1_401065-401048|NZ_CP025594.1_607401-607384|NZ_CP025594.1_3450153-3450136	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP025594.1_2087594_2087858_-,NA	NA|165aa|up_9|NZ_CP025594.1_2073888_2074383_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP025594.1_2074786_2075464_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP025594.1_2075822_2078648_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP025594.1_2078874_2079735_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP025594.1_2079775_2080642_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP025594.1_2080646_2082533_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP025594.1_2082548_2084582_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP025594.1_2084701_2086927_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP025594.1_2087202_2087598_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP025594.1_2087594_2087858_-	NA	NA|346aa|down_0|NZ_CP025594.1_2089629_2090667_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP025594.1_2090666_2092034_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP025594.1_2092207_2093644_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|486aa|down_3|NZ_CP025594.1_2093679_2095137_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP025594.1_2095166_2096117_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP025594.1_2096131_2096548_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP025594.1_2096825_2097248_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP025594.1_2097296_2097599_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP025594.1_2097595_2097910_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP025594.1_2097909_2099643_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	11	2168764-2168983	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP025594.1_2159870_2160278_-,NA|127aa|down_5|NZ_CP025594.1_2176499_2176880_-	NA|741aa|up_9|NZ_CP025594.1_2153838_2156061_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP025594.1_2156098_2156542_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP025594.1_2156655_2157249_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP025594.1_2157331_2157937_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP025594.1_2158036_2159041_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP025594.1_2159140_2159893_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP025594.1_2159870_2160278_-	NA	NA|368aa|up_2|NZ_CP025594.1_2160412_2161516_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP025594.1_2161515_2162712_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_0|NZ_CP025594.1_2162881_2167261_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP025594.1_2171010_2171475_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP025594.1_2171572_2172436_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP025594.1_2172473_2173745_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP025594.1_2174016_2175132_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP025594.1_2175122_2176463_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP025594.1_2176499_2176880_-	NA	NA|621aa|down_6|NZ_CP025594.1_2177036_2178899_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP025594.1_2178906_2179386_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP025594.1_2179622_2180396_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP025594.1_2180399_2181167_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	12	3119136-3120491	2,7,5	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-A,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP025594.1_3112415_3112670_-,NA|135aa|up_7|NZ_CP025594.1_3112817_3113222_+,NA|64aa|up_6|NZ_CP025594.1_3113218_3113410_+,NA|86aa|up_4|NZ_CP025594.1_3114996_3115254_+,NA|104aa|up_3|NZ_CP025594.1_3115358_3115670_+,NA|203aa|up_2|NZ_CP025594.1_3116089_3116698_+,NA	NA|92aa|up_9|NZ_CP025594.1_3111964_3112240_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP025594.1_3112415_3112670_-	NA	NA|135aa|up_7|NZ_CP025594.1_3112817_3113222_+	NA	NA|64aa|up_6|NZ_CP025594.1_3113218_3113410_+	NA	NA|385aa|up_5|NZ_CP025594.1_3113608_3114763_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP025594.1_3114996_3115254_+	NA	NA|104aa|up_3|NZ_CP025594.1_3115358_3115670_+	NA	NA|203aa|up_2|NZ_CP025594.1_3116089_3116698_+	NA	NA|470aa|up_1|NZ_CP025594.1_3116768_3118178_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP025594.1_3118174_3118987_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP025594.1_3120517_3121779_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP025594.1_3123576_3123918_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP025594.1_3123918_3124935_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP025594.1_3124947_3126096_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP025594.1_3126191_3127319_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP025594.1_3127315_3128224_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP025594.1_3128204_3128915_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP025594.1_3128924_3129299_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_8|NZ_CP025594.1_3129295_3131725_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP025594.1_3131721_3132444_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	13	3121814-3123528	8,6,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-D,Type III-A,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	23,23,20,20	23	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP025594.1_3112415_3112670_-,NA|135aa|up_8|NZ_CP025594.1_3112817_3113222_+,NA|64aa|up_7|NZ_CP025594.1_3113218_3113410_+,NA|86aa|up_5|NZ_CP025594.1_3114996_3115254_+,NA|104aa|up_4|NZ_CP025594.1_3115358_3115670_+,NA|203aa|up_3|NZ_CP025594.1_3116089_3116698_+,NA	NA|85aa|up_9|NZ_CP025594.1_3112415_3112670_-	NA	NA|135aa|up_8|NZ_CP025594.1_3112817_3113222_+	NA	NA|64aa|up_7|NZ_CP025594.1_3113218_3113410_+	NA	NA|385aa|up_6|NZ_CP025594.1_3113608_3114763_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP025594.1_3114996_3115254_+	NA	NA|104aa|up_4|NZ_CP025594.1_3115358_3115670_+	NA	NA|203aa|up_3|NZ_CP025594.1_3116089_3116698_+	NA	NA|470aa|up_2|NZ_CP025594.1_3116768_3118178_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP025594.1_3118174_3118987_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP025594.1_3120517_3121779_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP025594.1_3123576_3123918_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP025594.1_3123918_3124935_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP025594.1_3124947_3126096_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP025594.1_3126191_3127319_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP025594.1_3127315_3128224_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP025594.1_3128204_3128915_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP025594.1_3128924_3129299_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_CP025594.1_3129295_3131725_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP025594.1_3131721_3132444_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP025594.1_3132843_3133389_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	14	3740623-3741164	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP025594.1_3755265_3755553_-,NA|87aa|down_9|NZ_CP025594.1_3768673_3768934_-	NA|147aa|up_9|NZ_CP025594.1_3721194_3721635_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP025594.1_3721668_3722538_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP025594.1_3722558_3723569_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_6|NZ_CP025594.1_3723853_3724486_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP025594.1_3724552_3725782_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP025594.1_3726064_3727414_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP025594.1_3727425_3728565_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP025594.1_3728561_3729293_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_1|NZ_CP025594.1_3729301_3736873_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_CP025594.1_3736921_3737938_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP025594.1_3743135_3743393_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP025594.1_3743648_3753122_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP025594.1_3753747_3754194_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP025594.1_3754230_3754971_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP025594.1_3755265_3755553_-	NA	NA|3717aa|down_5|NZ_CP025594.1_3755889_3767040_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP025594.1_3767283_3768078_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP025594.1_3768159_3768531_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP025594.1_3768428_3768647_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_9|NZ_CP025594.1_3768673_3768934_-	NA
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	15	3762421-3762547	5	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTTGCCGATGCCGGTGTTGAAA	22	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|96aa|up_0|NZ_CP025594.1_3755265_3755553_-,NA|87aa|down_3|NZ_CP025594.1_3768673_3768934_-	NA|380aa|up_9|NZ_CP025594.1_3727425_3728565_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_8|NZ_CP025594.1_3728561_3729293_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_7|NZ_CP025594.1_3729301_3736873_-	pfam00823, PPE, PPE family	NA|339aa|up_6|NZ_CP025594.1_3736921_3737938_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|1539aa|up_5|NZ_CP025594.1_3738095_3742712_-	pfam00934, PE, PE family	NA|86aa|up_4|NZ_CP025594.1_3743135_3743393_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|up_3|NZ_CP025594.1_3743648_3753122_-	pfam00823, PPE, PPE family	NA|149aa|up_2|NZ_CP025594.1_3753747_3754194_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|up_1|NZ_CP025594.1_3754230_3754971_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|up_0|NZ_CP025594.1_3755265_3755553_-	NA	NA|265aa|down_0|NZ_CP025594.1_3767283_3768078_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_1|NZ_CP025594.1_3768159_3768531_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_2|NZ_CP025594.1_3768428_3768647_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_3|NZ_CP025594.1_3768673_3768934_-	NA	NA|130aa|down_4|NZ_CP025594.1_3769048_3769438_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|98aa|down_5|NZ_CP025594.1_3769451_3769745_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|282aa|down_6|NZ_CP025594.1_3769741_3770587_-	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|92aa|down_7|NZ_CP025594.1_3770710_3770986_+	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|86aa|down_8|NZ_CP025594.1_3770982_3771240_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|397aa|down_9|NZ_CP025594.1_3771281_3772472_+	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain
GCF_002886165.1_ASM288616v1	NZ_CP025594	Mycobacterium tuberculosis strain GG-5-10 chromosome, complete genome	16	4110586-4110674	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_8|NZ_CP025594.1_4101172_4101943_-,NA|119aa|up_3|NZ_CP025594.1_4107077_4107434_+,NA|52aa|up_2|NZ_CP025594.1_4107533_4107689_+,NA|233aa|up_0|NZ_CP025594.1_4109690_4110389_-,NA|126aa|down_6|NZ_CP025594.1_4115909_4116287_+	NA|288aa|up_9|NZ_CP025594.1_4099554_4100418_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_8|NZ_CP025594.1_4101172_4101943_-	NA	NA|549aa|up_7|NZ_CP025594.1_4101939_4103586_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_6|NZ_CP025594.1_4103582_4104446_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_5|NZ_CP025594.1_4104438_4105365_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_4|NZ_CP025594.1_4105366_4106992_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|119aa|up_3|NZ_CP025594.1_4107077_4107434_+	NA	NA|52aa|up_2|NZ_CP025594.1_4107533_4107689_+	NA	NA|652aa|up_1|NZ_CP025594.1_4107699_4109655_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP025594.1_4109690_4110389_-	NA	NA|173aa|down_0|NZ_CP025594.1_4110734_4111253_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP025594.1_4111253_4112237_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP025594.1_4112229_4113423_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP025594.1_4113428_4114250_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP025594.1_4114381_4115065_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP025594.1_4115064_4115802_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP025594.1_4115909_4116287_+	NA	NA|225aa|down_7|NZ_CP025594.1_4116385_4117060_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP025594.1_4117165_4117960_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP025594.1_4117966_4118422_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
