assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002865565.1_ASM286556v1	NZ_CP025582	Lacticaseibacillus paracasei strain HD1.7 chromosome, complete genome	1	260598-260739	1	CRISPRCasFinder	no		csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	Orphan	TCTGCGCCTGTTTGCGCGTTTCGAAAGTAGAGCATAAGCGGC	42	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	NA|115aa|up_6|NZ_CP025582.1_251730_252075_+,NA|111aa|down_5|NZ_CP025582.1_266019_266352_+	NA|302aa|up_9|NZ_CP025582.1_247400_248306_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|523aa|up_8|NZ_CP025582.1_248376_249945_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|451aa|up_7|NZ_CP025582.1_250129_251482_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|115aa|up_6|NZ_CP025582.1_251730_252075_+	NA	NA|240aa|up_5|NZ_CP025582.1_252148_252868_+	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|266aa|up_4|NZ_CP025582.1_252864_253662_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|283aa|up_3|NZ_CP025582.1_253733_254582_-	cd00841, MPP_YfcE, Escherichia coli YfcE and related proteins, metallophosphatase domain	NA|294aa|up_2|NZ_CP025582.1_254578_255460_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|365aa|up_1|NZ_CP025582.1_257383_258478_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|460aa|up_0|NZ_CP025582.1_258702_260082_-	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|415aa|down_0|NZ_CP025582.1_260967_262212_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|229aa|down_1|NZ_CP025582.1_262392_263079_-	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|253aa|down_2|NZ_CP025582.1_263523_264282_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|261aa|down_3|NZ_CP025582.1_264366_265149_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|248aa|down_4|NZ_CP025582.1_265167_265911_+	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|111aa|down_5|NZ_CP025582.1_266019_266352_+	NA	NA|200aa|down_6|NZ_CP025582.1_266654_267254_-	TIGR02227, Inactive_signal_peptidase_IA	NA|313aa|down_7|NZ_CP025582.1_267331_268270_-	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|516aa|down_8|NZ_CP025582.1_268649_270197_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|247aa|down_9|NZ_CP025582.1_270356_271097_-	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_002865565.1_ASM286556v1	NZ_CP025582	Lacticaseibacillus paracasei strain HD1.7 chromosome, complete genome	2	663250-663358	2	CRISPRCasFinder	no		csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	Orphan	GGTCCTTACACGTAGGTTTCTGGTCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	NA,NA	NA|126aa|up_9|NZ_CP025582.1_650399_650777_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|674aa|up_8|NZ_CP025582.1_650773_652795_+	cd01951, lectin_L-type, legume lectins	NA|234aa|up_7|NZ_CP025582.1_653634_654336_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|120aa|up_6|NZ_CP025582.1_654487_654847_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|234aa|up_5|NZ_CP025582.1_654830_655532_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|674aa|up_4|NZ_CP025582.1_655681_657703_+	cd01951, lectin_L-type, legume lectins	NA|325aa|up_3|NZ_CP025582.1_657778_658753_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|265aa|up_2|NZ_CP025582.1_660633_661428_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|183aa|up_1|NZ_CP025582.1_661679_662228_-	COG4720, COG4720, Predicted membrane protein [Function unknown]	NA|275aa|up_0|NZ_CP025582.1_662275_663100_-	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|291aa|down_0|NZ_CP025582.1_663481_664354_-	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|762aa|down_1|NZ_CP025582.1_664331_666617_-	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|573aa|down_2|NZ_CP025582.1_667751_669470_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_3|NZ_CP025582.1_669474_671256_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|415aa|down_4|NZ_CP025582.1_671417_672662_+	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|239aa|down_5|NZ_CP025582.1_672949_673666_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|549aa|down_6|NZ_CP025582.1_673891_675538_+	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|668aa|down_7|NZ_CP025582.1_675628_677632_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|435aa|down_8|NZ_CP025582.1_677972_679277_+	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|313aa|down_9|NZ_CP025582.1_681098_682037_-	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases
GCF_002865565.1_ASM286556v1	NZ_CP025582	Lacticaseibacillus paracasei strain HD1.7 chromosome, complete genome	3	752002-752129	3	CRISPRCasFinder	no		csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	Orphan	GGTTTCTGGGCCGGTTTGCGCGTTTCGGAGTTCAGCAATATCAG	44	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	NA|48aa|up_0|NZ_CP025582.1_751708_751852_+,NA|60aa|down_4|NZ_CP025582.1_756413_756593_+,NA|175aa|down_5|NZ_CP025582.1_756670_757195_+,NA|354aa|down_7|NZ_CP025582.1_759125_760187_-,NA|277aa|down_8|NZ_CP025582.1_760179_761010_-	NA|227aa|up_9|NZ_CP025582.1_741665_742346_-	pfam16161, DUF4867, Domain of unknown function (DUF4867)	NA|313aa|up_8|NZ_CP025582.1_742367_743306_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|334aa|up_7|NZ_CP025582.1_743420_744422_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|173aa|up_6|NZ_CP025582.1_744460_744979_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|143aa|up_5|NZ_CP025582.1_745023_745452_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|259aa|up_4|NZ_CP025582.1_745456_746233_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|209aa|up_3|NZ_CP025582.1_746676_747303_-	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase	NA|374aa|up_2|NZ_CP025582.1_747363_748485_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1042aa|up_1|NZ_CP025582.1_748484_751610_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|48aa|up_0|NZ_CP025582.1_751708_751852_+	NA	NA|159aa|down_0|NZ_CP025582.1_752599_753076_+	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|368aa|down_1|NZ_CP025582.1_753646_754750_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|262aa|down_2|NZ_CP025582.1_754960_755746_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_3|NZ_CP025582.1_755748_756417_+	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]	NA|60aa|down_4|NZ_CP025582.1_756413_756593_+	NA	NA|175aa|down_5|NZ_CP025582.1_756670_757195_+	NA	NA|211aa|down_6|NZ_CP025582.1_757427_758060_+	COG4832, COG4832, Uncharacterized conserved protein [Function unknown]	NA|354aa|down_7|NZ_CP025582.1_759125_760187_-	NA	NA|277aa|down_8|NZ_CP025582.1_760179_761010_-	NA	NA|217aa|down_9|NZ_CP025582.1_761239_761890_+	cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs
GCF_002865565.1_ASM286556v1	NZ_CP025582	Lacticaseibacillus paracasei strain HD1.7 chromosome, complete genome	4	1928246-1928363	4	CRISPRCasFinder	no		csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	Orphan	GGTCCTTATGTGTAGGTTTCTGGGCCAGC	29	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	NA,NA|125aa|down_1|NZ_CP025582.1_1931266_1931641_-,NA|141aa|down_2|NZ_CP025582.1_1931780_1932203_-,NA|56aa|down_5|NZ_CP025582.1_1937903_1938071_-	NA|386aa|up_9|NZ_CP025582.1_1915240_1916398_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_8|NZ_CP025582.1_1916663_1917491_-	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|398aa|up_7|NZ_CP025582.1_1917493_1918687_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|488aa|up_6|NZ_CP025582.1_1918690_1920154_-	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|234aa|up_5|NZ_CP025582.1_1920598_1921300_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|382aa|up_4|NZ_CP025582.1_1921324_1922470_-	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|266aa|up_3|NZ_CP025582.1_1922576_1923374_-	COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]	NA|659aa|up_2|NZ_CP025582.1_1923386_1925363_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|276aa|up_1|NZ_CP025582.1_1925691_1926519_-	TIGR03729, acc_ester, putative phosphoesterase	NA|489aa|up_0|NZ_CP025582.1_1926580_1928047_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|773aa|down_0|NZ_CP025582.1_1928522_1930841_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|125aa|down_1|NZ_CP025582.1_1931266_1931641_-	NA	NA|141aa|down_2|NZ_CP025582.1_1931780_1932203_-	NA	NA|379aa|down_3|NZ_CP025582.1_1934289_1935426_+	pfam01120, Alpha_L_fucos, Alpha-L-fucosidase	NA|106aa|down_4|NZ_CP025582.1_1935534_1935852_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|56aa|down_5|NZ_CP025582.1_1937903_1938071_-	NA	NA|704aa|down_6|NZ_CP025582.1_1938106_1940218_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|164aa|down_7|NZ_CP025582.1_1940204_1940696_-	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism]	NA|251aa|down_8|NZ_CP025582.1_1940894_1941647_-	cd01840, SGNH_hydrolase_yrhL_like, yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases	NA|430aa|down_9|NZ_CP025582.1_1942129_1943419_-	cd06415, GH25_Cpl1-like, Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections
GCF_002865565.1_ASM286556v1	NZ_CP025582	Lacticaseibacillus paracasei strain HD1.7 chromosome, complete genome	5	2306793-2308940	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	Type II-B,Type II-C,Type II-A	GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC,GCTCTTGAACTGATTGATTCGACATCTACCTGAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	32,32,13	32	TypeII-B,TypeII-C,TypeII-A	csa3,DinG,DEDDh,csn2,cas2,cas1,cas9,WYL,cas3	NA|119aa|up_9|NZ_CP025582.1_2290505_2290862_+,NA|367aa|up_0|NZ_CP025582.1_2305410_2306511_-,NA|265aa|down_4|NZ_CP025582.1_2315257_2316052_-,NA|389aa|down_5|NZ_CP025582.1_2316052_2317219_-,NA|108aa|down_7|NZ_CP025582.1_2317885_2318209_+	NA|119aa|up_9|NZ_CP025582.1_2290505_2290862_+	NA	NA|444aa|up_8|NZ_CP025582.1_2292526_2293858_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|189aa|up_7|NZ_CP025582.1_2295646_2296213_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|483aa|up_6|NZ_CP025582.1_2296339_2297788_-	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|613aa|up_5|NZ_CP025582.1_2298032_2299871_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|286aa|up_4|NZ_CP025582.1_2300322_2301180_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|544aa|up_3|NZ_CP025582.1_2301318_2302950_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|564aa|up_2|NZ_CP025582.1_2302946_2304638_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|142aa|up_1|NZ_CP025582.1_2304834_2305260_-	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|367aa|up_0|NZ_CP025582.1_2305410_2306511_-	NA	csn2|226aa|down_0|NZ_CP025582.1_2308964_2309642_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP025582.1_2309638_2309944_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP025582.1_2309921_2310827_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1362aa|down_3|NZ_CP025582.1_2311023_2315109_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|265aa|down_4|NZ_CP025582.1_2315257_2316052_-	NA	NA|389aa|down_5|NZ_CP025582.1_2316052_2317219_-	NA	NA|125aa|down_6|NZ_CP025582.1_2317442_2317817_+	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|108aa|down_7|NZ_CP025582.1_2317885_2318209_+	NA	NA|576aa|down_8|NZ_CP025582.1_2318280_2320008_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|581aa|down_9|NZ_CP025582.1_2319988_2321731_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
