assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002863905.1_ASM286390v1	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	1	198090-198405	1,1	CRT,PILER-CR	no	cas10,csm3gr7,cas1,cas2	csa3,cas10,csm3gr7,cas1,cas2	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGAC,GTTTCTGTGCCCGTAGGCGAATGGAGCACTGTCGACC	36,37	0	0	NA	NA	NA:NA	4,3	4	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA|578aa|up_8|NZ_CP024892.1_184801_186535_+,NA|243aa|up_6|NZ_CP024892.1_188069_188798_+,NA|151aa|up_4|NZ_CP024892.1_190972_191425_-,NA|379aa|up_1|NZ_CP024892.1_194396_195533_-,NA|647aa|up_0|NZ_CP024892.1_195731_197672_-,NA|62aa|down_4|NZ_CP024892.1_202025_202211_+,NA|89aa|down_5|NZ_CP024892.1_202207_202474_+,NA|99aa|down_6|NZ_CP024892.1_202470_202767_+,NA|83aa|down_7|NZ_CP024892.1_204819_205068_+,NA|82aa|down_9|NZ_CP024892.1_206406_206652_+	csm3gr7|224aa|up_9|NZ_CP024892.1_184126_184798_+	pfam03787, RAMPs, RAMP superfamily	NA|578aa|up_8|NZ_CP024892.1_184801_186535_+	NA	NA|514aa|up_7|NZ_CP024892.1_186531_188073_+	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein	NA|243aa|up_6|NZ_CP024892.1_188069_188798_+	NA	csm3gr7|710aa|up_5|NZ_CP024892.1_188794_190924_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|151aa|up_4|NZ_CP024892.1_190972_191425_-	NA	NA|243aa|up_3|NZ_CP024892.1_191450_192179_-	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type	NA|697aa|up_2|NZ_CP024892.1_192242_194333_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|379aa|up_1|NZ_CP024892.1_194396_195533_-	NA	NA|647aa|up_0|NZ_CP024892.1_195731_197672_-	NA	NA|107aa|down_0|NZ_CP024892.1_198734_199055_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas1|518aa|down_1|NZ_CP024892.1_199094_200648_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|98aa|down_2|NZ_CP024892.1_200665_200959_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|273aa|down_3|NZ_CP024892.1_201140_201958_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|62aa|down_4|NZ_CP024892.1_202025_202211_+	NA	NA|89aa|down_5|NZ_CP024892.1_202207_202474_+	NA	NA|99aa|down_6|NZ_CP024892.1_202470_202767_+	NA	NA|83aa|down_7|NZ_CP024892.1_204819_205068_+	NA	NA|243aa|down_8|NZ_CP024892.1_205155_205884_-	cd03144, GATase1_ScBLP_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)	NA|82aa|down_9|NZ_CP024892.1_206406_206652_+	NA
GCF_002863905.1_ASM286390v1	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	2	202838-203216	1,2,2	CRISPRCasFinder,PILER-CR,CRT	no	csm3gr7,cas1,cas2	csa3,cas10,csm3gr7,cas1,cas2	Type III-A	GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC,GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC,GTTTCTGTGCCCGTAGGCAGGTAGAGCGCTGTCGAC	36,36,36	0	0	NA	NA	NA:NA:NA	5,4,4	5	TypeIII-A	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA|379aa|up_8|NZ_CP024892.1_194396_195533_-,NA|647aa|up_7|NZ_CP024892.1_195731_197672_-,NA|62aa|up_2|NZ_CP024892.1_202025_202211_+,NA|89aa|up_1|NZ_CP024892.1_202207_202474_+,NA|99aa|up_0|NZ_CP024892.1_202470_202767_+,NA|83aa|down_0|NZ_CP024892.1_204819_205068_+,NA|82aa|down_2|NZ_CP024892.1_206406_206652_+,NA|82aa|down_3|NZ_CP024892.1_206818_207064_-,NA|64aa|down_4|NZ_CP024892.1_207208_207400_-,NA|74aa|down_6|NZ_CP024892.1_209898_210120_-	NA|697aa|up_9|NZ_CP024892.1_192242_194333_-	TIGR02710, conserved_hypothetical_protein, CRISPR-associated protein, TIGR02710 family	NA|379aa|up_8|NZ_CP024892.1_194396_195533_-	NA	NA|647aa|up_7|NZ_CP024892.1_195731_197672_-	NA	NA|107aa|up_6|NZ_CP024892.1_198734_199055_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	cas1|518aa|up_5|NZ_CP024892.1_199094_200648_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|98aa|up_4|NZ_CP024892.1_200665_200959_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|273aa|up_3|NZ_CP024892.1_201140_201958_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|62aa|up_2|NZ_CP024892.1_202025_202211_+	NA	NA|89aa|up_1|NZ_CP024892.1_202207_202474_+	NA	NA|99aa|up_0|NZ_CP024892.1_202470_202767_+	NA	NA|83aa|down_0|NZ_CP024892.1_204819_205068_+	NA	NA|243aa|down_1|NZ_CP024892.1_205155_205884_-	cd03144, GATase1_ScBLP_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)	NA|82aa|down_2|NZ_CP024892.1_206406_206652_+	NA	NA|82aa|down_3|NZ_CP024892.1_206818_207064_-	NA	NA|64aa|down_4|NZ_CP024892.1_207208_207400_-	NA	NA|287aa|down_5|NZ_CP024892.1_207799_208660_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|74aa|down_6|NZ_CP024892.1_209898_210120_-	NA	NA|201aa|down_7|NZ_CP024892.1_210103_210706_-	TIGR04211, hypothetical_protein, SH3 domain protein	NA|612aa|down_8|NZ_CP024892.1_210777_212613_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|382aa|down_9|NZ_CP024892.1_212609_213755_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain
GCF_002863905.1_ASM286390v1	NZ_CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	1	1592772-1592889	1	CRISPRCasFinder	no		WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	Orphan	ACCACGCGATCCGGCACCGCGAAATCCA	28	1	3	1592800-1592816|1592800-1592816|1592800-1592816	NZ_CP024890.1_3280363-3280347|NZ_CP024890.1_4747183-4747199|NZ_CP024892.1_186031-186047	NA	2	2	Orphan	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA|81aa|up_8|NZ_CP024890.1_1582631_1582874_+,NA|63aa|up_5|NZ_CP024890.1_1584357_1584546_-,NA|143aa|down_0|NZ_CP024890.1_1593143_1593572_+	NA|137aa|up_9|NZ_CP024890.1_1582053_1582464_-	COG1278, CspC, Cold shock proteins [Transcription]	NA|81aa|up_8|NZ_CP024890.1_1582631_1582874_+	NA	NA|131aa|up_7|NZ_CP024890.1_1582870_1583263_+	PRK11770, PRK11770, YccF domain-containing protein	NA|195aa|up_6|NZ_CP024890.1_1583708_1584293_+	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|63aa|up_5|NZ_CP024890.1_1584357_1584546_-	NA	NA|761aa|up_4|NZ_CP024890.1_1584606_1586889_+	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|553aa|up_3|NZ_CP024890.1_1586965_1588624_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|223aa|up_2|NZ_CP024890.1_1588631_1589300_-	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|558aa|up_1|NZ_CP024890.1_1589281_1590955_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|469aa|up_0|NZ_CP024890.1_1591023_1592430_-	COG2851, CitM, H+/citrate symporter [Energy production and conversion]	NA|143aa|down_0|NZ_CP024890.1_1593143_1593572_+	NA	NA|223aa|down_1|NZ_CP024890.1_1593677_1594346_+	pfam11580, DUF3239, Protein of unknown function (DUF3239)	NA|188aa|down_2|NZ_CP024890.1_1594348_1594912_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|329aa|down_3|NZ_CP024890.1_1594925_1595912_-	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|450aa|down_4|NZ_CP024890.1_1596015_1597365_-	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|291aa|down_5|NZ_CP024890.1_1597398_1598271_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|273aa|down_6|NZ_CP024890.1_1598263_1599082_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|304aa|down_7|NZ_CP024890.1_1600517_1601429_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|138aa|down_8|NZ_CP024890.1_1601439_1601853_+	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|204aa|down_9|NZ_CP024890.1_1601834_1602446_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]
GCF_002863905.1_ASM286390v1	NZ_CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	2	1685366-1685572	2	CRISPRCasFinder	no		WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	Orphan	CTCGACGTCGACCATCACCTTCG	23	0	0	NA	NA	NA	3	3	Orphan	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA|137aa|up_8|NZ_CP024890.1_1677641_1678052_-,NA|46aa|up_7|NZ_CP024890.1_1678229_1678367_+,NA|145aa|up_6|NZ_CP024890.1_1678369_1678804_-,NA|419aa|up_5|NZ_CP024890.1_1678803_1680060_-,NA|206aa|up_4|NZ_CP024890.1_1680056_1680674_-,NA|213aa|up_3|NZ_CP024890.1_1680698_1681337_-,NA|162aa|up_2|NZ_CP024890.1_1681373_1681859_-,NA|444aa|up_1|NZ_CP024890.1_1681855_1683187_-,NA|429aa|up_0|NZ_CP024890.1_1683190_1684477_-,NA|73aa|down_0|NZ_CP024890.1_1687516_1687735_-,NA|159aa|down_1|NZ_CP024890.1_1687782_1688259_-,NA|106aa|down_2|NZ_CP024890.1_1688296_1688614_-,NA|67aa|down_3|NZ_CP024890.1_1688721_1688922_-,NA|135aa|down_4|NZ_CP024890.1_1688918_1689323_-,NA|176aa|down_5|NZ_CP024890.1_1689334_1689862_-,NA|265aa|down_6|NZ_CP024890.1_1689858_1690653_-,NA|159aa|down_7|NZ_CP024890.1_1690825_1691302_-,NA|138aa|down_8|NZ_CP024890.1_1691399_1691813_-,NA|253aa|down_9|NZ_CP024890.1_1692315_1693074_+	NA|333aa|up_9|NZ_CP024890.1_1676375_1677374_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|137aa|up_8|NZ_CP024890.1_1677641_1678052_-	NA	NA|46aa|up_7|NZ_CP024890.1_1678229_1678367_+	NA	NA|145aa|up_6|NZ_CP024890.1_1678369_1678804_-	NA	NA|419aa|up_5|NZ_CP024890.1_1678803_1680060_-	NA	NA|206aa|up_4|NZ_CP024890.1_1680056_1680674_-	NA	NA|213aa|up_3|NZ_CP024890.1_1680698_1681337_-	NA	NA|162aa|up_2|NZ_CP024890.1_1681373_1681859_-	NA	NA|444aa|up_1|NZ_CP024890.1_1681855_1683187_-	NA	NA|429aa|up_0|NZ_CP024890.1_1683190_1684477_-	NA	NA|73aa|down_0|NZ_CP024890.1_1687516_1687735_-	NA	NA|159aa|down_1|NZ_CP024890.1_1687782_1688259_-	NA	NA|106aa|down_2|NZ_CP024890.1_1688296_1688614_-	NA	NA|67aa|down_3|NZ_CP024890.1_1688721_1688922_-	NA	NA|135aa|down_4|NZ_CP024890.1_1688918_1689323_-	NA	NA|176aa|down_5|NZ_CP024890.1_1689334_1689862_-	NA	NA|265aa|down_6|NZ_CP024890.1_1689858_1690653_-	NA	NA|159aa|down_7|NZ_CP024890.1_1690825_1691302_-	NA	NA|138aa|down_8|NZ_CP024890.1_1691399_1691813_-	NA	NA|253aa|down_9|NZ_CP024890.1_1692315_1693074_+	NA
GCF_002863905.1_ASM286390v1	NZ_CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	3	1685639-1685718	3	CRISPRCasFinder	no		WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	Orphan	CTCGACGTCGACCATCACCTTCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA|137aa|up_8|NZ_CP024890.1_1677641_1678052_-,NA|46aa|up_7|NZ_CP024890.1_1678229_1678367_+,NA|145aa|up_6|NZ_CP024890.1_1678369_1678804_-,NA|419aa|up_5|NZ_CP024890.1_1678803_1680060_-,NA|206aa|up_4|NZ_CP024890.1_1680056_1680674_-,NA|213aa|up_3|NZ_CP024890.1_1680698_1681337_-,NA|162aa|up_2|NZ_CP024890.1_1681373_1681859_-,NA|444aa|up_1|NZ_CP024890.1_1681855_1683187_-,NA|429aa|up_0|NZ_CP024890.1_1683190_1684477_-,NA|73aa|down_0|NZ_CP024890.1_1687516_1687735_-,NA|159aa|down_1|NZ_CP024890.1_1687782_1688259_-,NA|106aa|down_2|NZ_CP024890.1_1688296_1688614_-,NA|67aa|down_3|NZ_CP024890.1_1688721_1688922_-,NA|135aa|down_4|NZ_CP024890.1_1688918_1689323_-,NA|176aa|down_5|NZ_CP024890.1_1689334_1689862_-,NA|265aa|down_6|NZ_CP024890.1_1689858_1690653_-,NA|159aa|down_7|NZ_CP024890.1_1690825_1691302_-,NA|138aa|down_8|NZ_CP024890.1_1691399_1691813_-,NA|253aa|down_9|NZ_CP024890.1_1692315_1693074_+	NA|333aa|up_9|NZ_CP024890.1_1676375_1677374_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)	NA|137aa|up_8|NZ_CP024890.1_1677641_1678052_-	NA	NA|46aa|up_7|NZ_CP024890.1_1678229_1678367_+	NA	NA|145aa|up_6|NZ_CP024890.1_1678369_1678804_-	NA	NA|419aa|up_5|NZ_CP024890.1_1678803_1680060_-	NA	NA|206aa|up_4|NZ_CP024890.1_1680056_1680674_-	NA	NA|213aa|up_3|NZ_CP024890.1_1680698_1681337_-	NA	NA|162aa|up_2|NZ_CP024890.1_1681373_1681859_-	NA	NA|444aa|up_1|NZ_CP024890.1_1681855_1683187_-	NA	NA|429aa|up_0|NZ_CP024890.1_1683190_1684477_-	NA	NA|73aa|down_0|NZ_CP024890.1_1687516_1687735_-	NA	NA|159aa|down_1|NZ_CP024890.1_1687782_1688259_-	NA	NA|106aa|down_2|NZ_CP024890.1_1688296_1688614_-	NA	NA|67aa|down_3|NZ_CP024890.1_1688721_1688922_-	NA	NA|135aa|down_4|NZ_CP024890.1_1688918_1689323_-	NA	NA|176aa|down_5|NZ_CP024890.1_1689334_1689862_-	NA	NA|265aa|down_6|NZ_CP024890.1_1689858_1690653_-	NA	NA|159aa|down_7|NZ_CP024890.1_1690825_1691302_-	NA	NA|138aa|down_8|NZ_CP024890.1_1691399_1691813_-	NA	NA|253aa|down_9|NZ_CP024890.1_1692315_1693074_+	NA
GCF_002863905.1_ASM286390v1	NZ_CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	4	2549300-2549376	4	CRISPRCasFinder	no	DEDDh	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	Unclear	CCGCCGAGTCCGCCGCCGCGATC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA|149aa|up_7|NZ_CP024890.1_2540089_2540536_-,NA|72aa|down_3|NZ_CP024890.1_2552734_2552950_-	NA|92aa|up_9|NZ_CP024890.1_2538591_2538867_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|358aa|up_8|NZ_CP024890.1_2538950_2540024_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|149aa|up_7|NZ_CP024890.1_2540089_2540536_-	NA	NA|204aa|up_6|NZ_CP024890.1_2540673_2541285_+	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|278aa|up_5|NZ_CP024890.1_2541384_2542218_+	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]	NA|376aa|up_4|NZ_CP024890.1_2542214_2543342_+	COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion]	NA|550aa|up_3|NZ_CP024890.1_2543338_2544988_+	pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB	NA|292aa|up_2|NZ_CP024890.1_2545126_2546002_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|139aa|up_1|NZ_CP024890.1_2546583_2547000_-	pfam12270, Cyt_c_ox_IV, Cytochrome c oxidase subunit IV	NA|355aa|up_0|NZ_CP024890.1_2547031_2548096_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|324aa|down_0|NZ_CP024890.1_2550357_2551329_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|117aa|down_1|NZ_CP024890.1_2551442_2551793_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|222aa|down_2|NZ_CP024890.1_2551938_2552604_+	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|72aa|down_3|NZ_CP024890.1_2552734_2552950_-	NA	NA|368aa|down_4|NZ_CP024890.1_2553084_2554188_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|251aa|down_5|NZ_CP024890.1_2554187_2554940_+	PRK00235, cobS, cobalamin synthase; Reviewed	NA|368aa|down_6|NZ_CP024890.1_2554955_2556059_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|367aa|down_7|NZ_CP024890.1_2556092_2557193_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|503aa|down_8|NZ_CP024890.1_2557267_2558776_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|586aa|down_9|NZ_CP024890.1_2559033_2560791_+	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
GCF_002863905.1_ASM286390v1	NZ_CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	5	3143217-3143305	5	CRISPRCasFinder	no		WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	Orphan	CGGTCGTTGCCCGCGGCGAGGGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA,NA|116aa|down_5|NZ_CP024890.1_3223778_3224126_-	NA|228aa|up_9|NZ_CP024890.1_3122962_3123646_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|218aa|up_8|NZ_CP024890.1_3123642_3124296_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|102aa|up_7|NZ_CP024890.1_3124341_3124647_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|555aa|up_6|NZ_CP024890.1_3125082_3126747_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|232aa|up_5|NZ_CP024890.1_3126889_3127585_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|333aa|up_4|NZ_CP024890.1_3127719_3128718_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|284aa|up_3|NZ_CP024890.1_3128714_3129566_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|286aa|up_2|NZ_CP024890.1_3129573_3130431_+	TIGR01248, drrC, daunorubicin resistance protein C	NA|328aa|up_1|NZ_CP024890.1_3130550_3131534_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|343aa|up_0|NZ_CP024890.1_3131616_3132645_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|1952aa|down_0|NZ_CP024890.1_3146672_3152528_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|4032aa|down_1|NZ_CP024890.1_3153064_3165160_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2467aa|down_2|NZ_CP024890.1_3165376_3172777_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|9849aa|down_3|NZ_CP024890.1_3172983_3202530_-	PRK12316, PRK12316, peptide synthase; Provisional	NA|6939aa|down_4|NZ_CP024890.1_3202673_3223490_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|116aa|down_5|NZ_CP024890.1_3223778_3224126_-	NA	NA|654aa|down_6|NZ_CP024890.1_3224203_3226165_-	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|281aa|down_7|NZ_CP024890.1_3226161_3227004_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|279aa|down_8|NZ_CP024890.1_3227163_3228000_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|162aa|down_9|NZ_CP024890.1_3227996_3228482_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
GCF_002863905.1_ASM286390v1	NZ_CP024890	Rhodococcus ruber strain YYL chromosome, complete genome	6	4652130-4652226	6	CRISPRCasFinder	no		WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal	Orphan	GCGCGGTTCAGCCGGCGCGCACAGCGCGGT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas4,DEDDh,c2c9_V-U4,DinG,csa3,cas3,Cas9_archaeal,cas10,csm3gr7,cas1,cas2	NA,NA	NA|247aa|up_9|NZ_CP024890.1_4646252_4646993_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|207aa|up_8|NZ_CP024890.1_4647074_4647695_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|234aa|up_7|NZ_CP024890.1_4647703_4648405_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|252aa|up_6|NZ_CP024890.1_4648401_4649157_+	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|66aa|up_5|NZ_CP024890.1_4649330_4649528_+	pfam04324, Fer2_BFD, BFD-like [2Fe-2S] binding domain	NA|159aa|up_4|NZ_CP024890.1_4649573_4650050_+	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain	NA|155aa|up_3|NZ_CP024890.1_4650046_4650511_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|154aa|up_2|NZ_CP024890.1_4650556_4651018_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|97aa|up_1|NZ_CP024890.1_4651035_4651326_+	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|260aa|up_0|NZ_CP024890.1_4651349_4652129_+	TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific	NA|174aa|down_0|NZ_CP024890.1_4652976_4653498_+	pfam09350, DUF1992, Domain of unknown function (DUF1992)	NA|303aa|down_1|NZ_CP024890.1_4653731_4654640_+	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins	NA|226aa|down_2|NZ_CP024890.1_4654682_4655360_+	pfam16316, DUF4956, Domain of unknown function (DUF4956)	NA|482aa|down_3|NZ_CP024890.1_4655455_4656901_+	COG5337, CotH, Spore coat assembly protein [Cell envelope biogenesis, outer membrane]	NA|194aa|down_4|NZ_CP024890.1_4657151_4657733_+	pfam13671, AAA_33, AAA domain	NA|139aa|down_5|NZ_CP024890.1_4657960_4658377_+	PRK09648, PRK09648, RNA polymerase sigma factor ShbA	NA|247aa|down_6|NZ_CP024890.1_4658584_4659325_+	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein	NA|394aa|down_7|NZ_CP024890.1_4659423_4660605_+	pfam13191, AAA_16, AAA ATPase domain	NA|395aa|down_8|NZ_CP024890.1_4660610_4661795_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|488aa|down_9|NZ_CP024890.1_4661963_4663427_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated
