assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	1	34753-34849	1	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|231aa|up_9|NZ_CP019051.1_26538_27231_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP019051.1_27450_27993_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP019051.1_28473_29340_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP019051.1_29341_29554_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP019051.1_29661_30183_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP019051.1_30218_31604_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP019051.1_31777_32272_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP019051.1_32274_32997_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP019051.1_33114_33624_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP019051.1_33620_34688_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP019051.1_34892_35786_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP019051.1_35782_36598_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP019051.1_36608_37868_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP019051.1_37877_39545_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP019051.1_39861_40911_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP019051.1_40932_42168_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP019051.1_42178_42964_+	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|382aa|down_7|NZ_CP019051.1_43092_44238_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP019051.1_44259_45561_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP019051.1_45617_46979_-	PRK08044, PRK08044, allantoinase AllB
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	2	579781-579913	1	PILER-CR	no		RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|126aa|up_9|NZ_CP019051.1_570485_570863_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP019051.1_570869_571712_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP019051.1_571789_572269_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP019051.1_572460_574323_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP019051.1_574315_574846_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP019051.1_574953_576285_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP019051.1_576342_576630_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP019051.1_576626_577913_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP019051.1_577963_578905_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP019051.1_578919_579690_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP019051.1_580163_581678_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP019051.1_581708_582851_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP019051.1_582979_584197_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP019051.1_584270_585824_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP019051.1_585932_586718_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP019051.1_586723_587314_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP019051.1_587399_587795_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP019051.1_588055_591277_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP019051.1_591294_592443_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP019051.1_592898_593720_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	3	2056589-2056706	2	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP019051.1_2056779_2056944_-	NA|115aa|up_9|NZ_CP019051.1_2044310_2044655_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP019051.1_2044843_2045782_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP019051.1_2045880_2046870_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP019051.1_2046891_2048223_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP019051.1_2048248_2049457_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP019051.1_2049490_2051785_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP019051.1_2051798_2052188_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP019051.1_2052259_2053624_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP019051.1_2053898_2055230_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP019051.1_2055257_2056568_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP019051.1_2056779_2056944_-	NA	NA|234aa|down_1|NZ_CP019051.1_2056966_2057668_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP019051.1_2057772_2058669_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP019051.1_2058719_2059076_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP019051.1_2059317_2059683_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP019051.1_2059975_2060962_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP019051.1_2061031_2061514_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP019051.1_2061609_2061909_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP019051.1_2061898_2062303_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP019051.1_2062305_2062611_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	4	2504610-2505370	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	Unclear	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP019051.1_2503319_2503460_-,NA	NA|919aa|up_9|NZ_CP019051.1_2491203_2493960_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP019051.1_2494016_2495318_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP019051.1_2495365_2497600_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP019051.1_2497677_2497926_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP019051.1_2497925_2498261_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP019051.1_2498331_2499123_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP019051.1_2499350_2500988_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP019051.1_2501075_2502374_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP019051.1_2503319_2503460_-	NA	NA|224aa|up_0|NZ_CP019051.1_2503598_2504270_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP019051.1_2506008_2507487_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP019051.1_2507513_2508791_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP019051.1_2509109_2509895_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP019051.1_2509964_2511419_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP019051.1_2511512_2512850_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP019051.1_2512827_2513607_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP019051.1_2513603_2514464_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP019051.1_2514611_2515187_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP019051.1_2515203_2515464_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP019051.1_2515454_2516726_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	5	2531073-2532260	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,19	19	TypeI-E	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP019051.1_2521069_2521804_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP019051.1_2522068_2522221_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP019051.1_2522414_2525114_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP019051.1_2525211_2526774_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|180aa|up_5|NZ_CP019051.1_2526770_2527310_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP019051.1_2527321_2528377_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP019051.1_2528387_2529134_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP019051.1_2529115_2529766_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP019051.1_2529762_2530683_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP019051.1_2530682_2530976_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP019051.1_2532341_2533379_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019051.1_2533630_2534539_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP019051.1_2534540_2535968_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019051.1_2535967_2536573_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP019051.1_2536622_2536946_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019051.1_2537139_2537451_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019051.1_2537469_2538180_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019051.1_2538179_2538659_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019051.1_2538655_2539705_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019051.1_2539685_2540447_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	6	3740956-3741079	5	CRISPRCasFinder	no	DEDDh	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP019051.1_3749975_3750065_+	NA|471aa|up_9|NZ_CP019051.1_3730410_3731823_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP019051.1_3732378_3732588_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP019051.1_3733043_3733670_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP019051.1_3733690_3735793_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP019051.1_3735796_3736444_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP019051.1_3736507_3737176_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP019051.1_3737172_3737958_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP019051.1_3737961_3738774_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP019051.1_3738785_3740390_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP019051.1_3740515_3740821_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP019051.1_3741393_3742650_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP019051.1_3742690_3744064_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP019051.1_3744278_3744920_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP019051.1_3744959_3746108_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP019051.1_3746398_3747610_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP019051.1_3747722_3748655_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP019051.1_3748651_3749677_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP019051.1_3749975_3750065_+	NA	NA|390aa|down_8|NZ_CP019051.1_3750230_3751400_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP019051.1_3751545_3752127_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	7	4419000-4419091	6	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP019051.1_4408250_4408460_-,NA	NA|70aa|up_9|NZ_CP019051.1_4408250_4408460_-	NA	NA|1321aa|up_8|NZ_CP019051.1_4408514_4412477_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP019051.1_4412516_4413155_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP019051.1_4413442_4414534_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP019051.1_4414533_4415226_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP019051.1_4415237_4415624_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP019051.1_4415631_4416432_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP019051.1_4416441_4417032_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP019051.1_4417042_4417537_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP019051.1_4417557_4418886_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP019051.1_4419514_4420111_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP019051.1_4420131_4420359_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP019051.1_4420396_4421638_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP019051.1_4421926_4423186_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP019051.1_4423446_4424367_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP019051.1_4424366_4424672_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP019051.1_4424764_4425364_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP019051.1_4425360_4427907_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP019051.1_4427906_4429079_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP019051.1_4429208_4429901_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_002860085.1_ASM286008v1	NZ_CP019051	Escherichia coli strain CRE1540 chromosome, complete genome	8	4716036-4716175	7	CRISPRCasFinder	no		RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCG	47	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	NA,NA	NA|330aa|up_9|NZ_CP019051.1_4703934_4704924_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP019051.1_4705320_4706229_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP019051.1_4706420_4708442_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP019051.1_4709020_4709698_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP019051.1_4709690_4710446_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP019051.1_4710432_4711587_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP019051.1_4711583_4712624_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP019051.1_4712710_4714000_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP019051.1_4714058_4714535_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP019051.1_4714686_4715970_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP019051.1_4716203_4718465_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP019051.1_4718647_4720081_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|318aa|down_2|NZ_CP019051.1_4721391_4722345_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_3|NZ_CP019051.1_4722385_4723381_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_4|NZ_CP019051.1_4723535_4724354_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_5|NZ_CP019051.1_4724354_4725413_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_6|NZ_CP019051.1_4725415_4726105_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_7|NZ_CP019051.1_4726104_4726878_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_8|NZ_CP019051.1_4727043_4727193_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|263aa|down_9|NZ_CP019051.1_4727321_4728110_+	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional
