The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	27279	79594	4105872	tRNA,transposase	Synechococcus_phage(25.0%)	48	NA	NA
WP_010929577.1|27279_28230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28310_28646_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28670_29105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29137_30364_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30360_30858_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31065_31974_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32159_33002_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33044_34466_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34621_35572_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35568_36759_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36945_37920_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37921_40060_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40056_40596_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40599_41328_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41314_42208_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42278_42674_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42683_43214_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43342_43642_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_003815267.1|45108_45744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45715_45952_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46079_46973_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48142_49390_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49386_50001_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_029443813.1|51128_52385_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53616_54351_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54356_54947_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54971_55661_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55657_56419_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56498_57398_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57491_58442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59242_60469_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60468_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61071_62013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62435_63272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248465.1|64057_64375_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64478_65537_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65571_66843_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67472_68654_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69075_70026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|70119_70434_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|71626_73534_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|73695_74316_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|74347_74929_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|75017_75269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|75270_76113_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|76218_77628_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|77624_78575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78649_79594_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	107417	175239	4105872	tRNA,transposase	Bacillus_phage(22.22%)	58	NA	NA
WP_010929626.1|107417_108368_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109266_110460_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110541_111171_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111232_111916_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111925_113608_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113895_114243_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114333_114651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114933_115950_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116025_116826_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116822_117698_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117708_119001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119043_120084_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120189_121011_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929969.1|121111_122062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122159_123065_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123061_123895_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124731_125742_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125738_126128_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127021_128275_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128365_130066_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130492_131140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131138_132578_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132670_132973_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133000_133879_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135145_136096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120810.1|136082_136226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815155.1|136514_138023_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_019247146.1|138769_142732_+	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929644.1|142784_143567_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929645.1|143654_144878_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929646.1|144861_145794_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_003817676.1|145799_146612_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_033446330.1|147924_148848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815135.1|149014_149797_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929648.1|150563_151544_-	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_010929649.1|151540_152269_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_003815126.1|152293_152725_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929650.1|152826_153702_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929651.1|153753_154974_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.2e-91
WP_010929652.1|155056_155518_-	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_010929653.1|155623_157021_-	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929654.1|157017_157695_-	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_010929655.1|157750_159061_-	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_003815113.1|159072_159771_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_003815111.1|159934_160711_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_010929656.1|160876_161899_+	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_023853232.1|162127_162763_+	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929658.1|162759_164322_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.0e-33
WP_005015810.1|164880_165831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167274_168177_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168154_168784_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|169114_170497_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|170530_171160_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171208_172816_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172840_173524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173605_174082_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|174122_174302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|174288_175239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	215648	266506	4105872	protease,tRNA,transposase	uncultured_Caudovirales_phage(33.33%)	41	NA	NA
WP_033455792.1|215648_218444_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219037_221980_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222051_222771_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222809_223358_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223512_224412_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224436_225387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013037.1|225373_225574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003818947.1|225605_226301_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226317_227730_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227842_229273_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229314_231228_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231546_232113_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232203_233205_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233319_234270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234356_235307_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235303_236254_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|236240_236414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|236352_237150_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238099_238510_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239531_240275_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240318_241362_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241532_243635_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245045_246002_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246020_246512_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246508_247864_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247864_248563_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248559_249261_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249513_250563_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250668_251610_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251606_253496_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253582_254221_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254363_255749_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255679_256216_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256367_257759_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257775_258756_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258891_259875_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259939_260839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260945_262700_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_101631015.1|262707_263817_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263844_264825_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265555_266506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	277122	303002	4105872	protease,transposase	Pithovirus(33.33%)	27	NA	NA
WP_005012067.1|277122_278073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278349_278511_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278518_278659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279177_279627_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279636_280248_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|280406_281261_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281280_282663_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282727_283369_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283508_283967_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|283991_284768_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284821_285958_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285954_286905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287003_287630_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287652_288579_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288587_290174_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290170_291175_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291374_292235_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292266_293268_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293338_294148_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294225_296085_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296213_297416_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297529_298411_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299913_300474_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300533_301484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299516.1|301470_301629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_111735998.1|301675_301963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302051_303002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	390835	448344	4105872	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|390835_391786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|391772_391940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|391922_392840_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392836_393085_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393081_394287_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394359_395355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395377_396598_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396594_397239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398969_399779_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|399996_401037_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|401005_401149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|401135_402119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402045_402747_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402795_403566_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|403562_404804_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404908_406615_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406611_407508_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407548_409138_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409187_410180_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410248_410848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|411308_412286_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412364_413315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413403_414318_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414314_414974_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415063_415987_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|415992_416448_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416444_417548_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417503_417776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417735_419355_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419351_420410_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420539_421034_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421126_422104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422299_423505_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423501_425013_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425028_426342_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426532_426712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427121_427856_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430300_431251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431382_431781_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432191_432662_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432750_433095_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433194_434595_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436383_436902_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437012_437768_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437963_439196_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439188_439974_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440040_441012_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441022_442000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442125_443298_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443324_444353_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444418_445612_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447393_448344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	589345	650529	4105872	protease,transposase	uncultured_Mediterranean_phage(50.0%)	53	NA	NA
WP_005013747.1|589345_590296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590771_591662_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591658_592480_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592679_593171_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593189_594263_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594309_595413_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595488_596109_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596129_596639_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596693_596945_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_077108607.1|596941_598141_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598148_598535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598531_601051_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601479_601818_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601814_602321_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602382_603183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603293_604235_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604328_605864_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607543_609394_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609397_610231_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610230_611172_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|611423_612419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612536_614825_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615131_616040_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_062810229.1|617133_618795_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|618791_619577_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619725_620676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621374_621758_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621815_622418_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622435_622837_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622970_623864_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623860_624442_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625236_625971_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626011_627061_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627208_627787_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628173_629151_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629244_633639_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633839_634688_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634846_635659_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635712_636663_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636760_637561_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637622_638006_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638017_639451_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639656_639986_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|639988_640657_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640920_641841_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641887_642100_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642122_642545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|642561_643662_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643758_645276_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814205.1|646211_647093_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647174_648269_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648562_649513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649587_650529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	655847	694101	4105872	terminase,tRNA,transposase	Synechococcus_phage(15.79%)	47	NA	NA
WP_003814219.1|655847_656879_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656919_657159_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657228_658818_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658817_659366_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659446_660019_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660037_660949_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661022_661991_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662113_663187_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663191_665012_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665088_666039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666127_666463_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666596_667247_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667268_668687_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668756_669512_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669480_670239_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670249_671131_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671147_671855_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671857_672616_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672825_674568_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674560_675085_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675124_675919_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676086_677160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677258_678209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|678460_678673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678738_679350_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|679829_680150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|680142_680841_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|680855_681077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681094_682045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|682720_683170_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|683156_684434_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684436_685855_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685883_686939_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686944_687187_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687309_687912_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688340_689291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|689308_689956_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|689965_690217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690279_690762_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690763_690964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690963_691359_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691355_691754_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691750_692173_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692180_692681_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692935_693454_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693463_693793_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693810_694101_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
>prophage 8
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	708209	762137	4105872	tRNA,transposase	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|708209_709940_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|709992_710421_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710423_711104_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711103_711562_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711598_712573_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712589_713906_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713937_714435_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714521_715211_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715210_716260_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716256_717051_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717219_717570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717545_718103_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|719027_719246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|719232_720183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|722461_723550_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723552_724995_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725099_726245_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726276_727074_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727098_728658_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728654_731027_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731136_732240_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732239_732932_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733075_733777_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733761_734139_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734870_735821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|735807_735951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|735980_736853_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737193_737412_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737451_738831_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738872_740270_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740309_741962_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741965_742850_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742849_743791_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743869_745489_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745655_746471_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746538_747108_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747108_748059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748712_749810_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749843_751109_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751266_752217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752460_753051_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753066_755511_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755630_756602_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756733_757258_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757217_758168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758388_760584_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760656_761064_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|761011_761200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|761186_762137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	884719	1025280	4105872	transposase	Bacillus_phage(11.11%)	116	NA	NA
WP_023994644.1|884719_885736_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930019.1|888513_889902_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889932_890922_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891032_892265_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892546_893347_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893369_895601_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896388_896835_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896856_897603_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897746_898724_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899357_899969_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|899962_901180_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901320_902271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902267_902987_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903107_905267_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905357_905627_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905715_905922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905920_906448_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906466_907246_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907413_908430_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908502_908994_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909004_910720_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911883_912834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|912830_914681_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915061_915721_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|915808_915961_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|916069_916237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916248_916929_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917210_917927_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917941_919243_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921387_924276_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924499_925852_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925880_926402_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926398_927853_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927887_928136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928241_929117_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929142_930198_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930210_931002_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931034_932405_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|933457_933595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|933581_934532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934584_934806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|934965_935178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935297_936416_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936512_936728_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936921_937173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937285_938236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938232_938616_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930067.1|938670_940488_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940634_941462_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941507_942488_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942484_942697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942693_943875_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944038_944773_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944774_947387_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947522_949436_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950051_950462_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_005012067.1|951741_952692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952688_953663_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953787_954699_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|954975_955368_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_124740670.1|955256_955511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|955497_956448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956477_956660_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957431_958613_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958827_959505_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_077274086.1|959501_960275_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA	NA
WP_010930094.1|960352_960934_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961304_963986_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|963985_965119_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965111_966197_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966283_967183_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967179_968508_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968522_969194_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_003821510.1|969366_971097_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971098_971458_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971649_971964_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972006_973227_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973223_974165_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974161_975151_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975185_975770_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975868_976819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|976899_977811_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|977871_979017_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|979036_979951_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|980022_980772_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|980771_981701_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|981944_983771_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|983853_984495_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|984684_985719_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|987555_988620_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|989417_990326_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|991813_993088_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|993241_993622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|993629_994502_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|994807_995188_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|995398_996124_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|996219_997170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997274_998324_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998461_999478_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1000985_1001558_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001617_1002349_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002400_1003318_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004125_1007305_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007301_1008684_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008753_1009005_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1009150_1009801_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1009951_1012066_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012141_1012993_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1012989_1013616_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013612_1015367_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015659_1018365_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018377_1020039_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020051_1021842_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022063_1023239_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023281_1024232_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1024329_1025280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1036886	1086870	4105872	holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_023853531.1|1036886_1038020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038112_1038265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038296_1038845_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038863_1039349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039526_1040465_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040467_1040785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040830_1041775_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043455_1044106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044159_1044495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044491_1045352_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045368_1045650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045723_1045987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046230_1047181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_101631020.1|1047479_1048220_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048651_1048975_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049009_1049570_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049690_1050566_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050578_1051526_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051626_1051920_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051946_1054004_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054018_1054519_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054592_1056299_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057162_1058215_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058267_1058657_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058665_1059298_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059397_1060414_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061244_1062252_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062248_1063892_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1063888_1064791_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064916_1065390_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065379_1066402_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066398_1067826_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068763_1069780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070112_1071048_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071097_1072978_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073044_1073389_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073533_1074670_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074666_1075740_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075897_1077334_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077424_1078066_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078401_1079418_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077068988.1|1081294_1081474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|1083612_1085034_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085297_1086014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086098_1086416_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086456_1086870_+|holin	phage holin family protein	holin	NA	NA	NA	NA
>prophage 11
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1095938	1181933	4105872	tRNA,transposase	Planktothrix_phage(18.18%)	60	NA	NA
WP_005013747.1|1095938_1096889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097255_1098032_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_010930169.1|1098954_1099971_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100105_1101146_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101340_1103422_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103657_1105151_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105381_1106176_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106396_1107755_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107751_1108594_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108612_1110499_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1110736_1111369_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111387_1111990_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1111993_1112155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930177.1|1113893_1114694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1114737_1115724_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115863_1116877_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116873_1117824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117936_1118395_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118431_1119745_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119762_1120134_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120130_1121594_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_003812697.1|1121686_1122463_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_076879621.1|1122444_1125324_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125506_1126457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126624_1127449_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127448_1128327_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129231_1130347_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930187.1|1130354_1131170_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.7	7.5e-12
WP_010930188.1|1131166_1133032_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133110_1133743_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133739_1134042_-	membrane protein	NA	NA	NA	NA	NA
WP_010926447.1|1135610_1136366_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1136395_1137500_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1137602_1139303_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1139284_1140262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1140271_1141552_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1141544_1142240_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1142273_1143101_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1143382_1146613_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930195.1|1146879_1147056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930196.1|1147346_1151273_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1153172_1154969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1154968_1155937_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156006_1156852_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156919_1157474_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157520_1158471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158569_1159202_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159366_1161649_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161803_1164500_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164625_1165114_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167524_1170395_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170440_1171655_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171884_1173312_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173352_1174501_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174513_1175272_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175359_1176262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176258_1177209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177338_1178322_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178376_1179099_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180577_1181933_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 12
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1216754	1298663	4105872	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_076879566.1|1216754_1217705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217791_1218742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218738_1219689_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879546.1|1219675_1220026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931069.1|1219949_1220978_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1221057_1222356_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931067.1|1223245_1227292_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1227532_1235194_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1235190_1236141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1237280_1237754_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1237893_1238514_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1238649_1239450_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1239504_1240596_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1240617_1241061_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1241089_1241722_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1241832_1242249_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1242241_1242934_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1243040_1243415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1243491_1244301_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1244396_1245341_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1245379_1246351_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1246441_1246879_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1246937_1247819_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1248822_1249683_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1249715_1251098_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1251094_1252114_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1252486_1252981_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1252988_1253729_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1253809_1255414_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_019248319.1|1255453_1256263_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	1.6e-22
WP_023995127.1|1256367_1258533_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1259413_1260226_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1260238_1260547_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1260664_1262395_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1262396_1263542_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1263671_1264340_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1264461_1264929_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1265064_1266447_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1266443_1267568_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1267564_1270201_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931041.1|1275312_1275924_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276146_1277607_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277703_1279296_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_076879563.1|1279282_1279561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931039.1|1279619_1279907_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279908_1281249_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281344_1282034_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282046_1283477_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285201_1286023_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286033_1287605_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287633_1288611_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288636_1289440_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289436_1290231_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290238_1291474_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291466_1291901_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292650_1293601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294222_1295950_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296061_1297420_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_076879564.1|1297540_1297726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297712_1298663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1418051	1472261	4105872	tRNA,transposase	Salmonella_phage(22.22%)	45	NA	NA
WP_005013747.1|1418051_1419002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219858.1|1418988_1419156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419168_1419522_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419534_1419897_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1419938_1420364_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420566_1421823_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422021_1423002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423151_1424393_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424491_1425442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425450_1426146_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1428966_1429566_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429576_1431742_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431765_1433550_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433549_1433639_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434333_1434606_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434605_1436672_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436668_1437619_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437717_1438668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438783_1439116_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439112_1439799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439785_1440745_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440786_1443147_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443146_1443779_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814028.1|1443841_1445221_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445267_1446623_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814025.1|1446901_1447150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447337_1447655_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447927_1448443_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448536_1448698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448713_1449469_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449807_1450014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450021_1450681_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450975_1453180_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453290_1454514_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_023853050.1|1454636_1455548_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455677_1456871_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456885_1457686_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457682_1459539_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459535_1460141_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460159_1461545_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814010.1|1465426_1466200_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466211_1467453_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469234_1470185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1470216_1471314_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1471310_1472261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1515865	1582194	4105872	transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_005012067.1|1515865_1516816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516822_1517935_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518621_1519824_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520027_1522688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522700_1526105_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526772_1528998_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529044_1529371_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529421_1530030_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530128_1531079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531148_1531913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1531909_1532509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820094.1|1532612_1533458_-	putative membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533523_1534150_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534146_1535097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068977.1|1535083_1535272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930428.1|1535195_1536317_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536297_1537299_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537404_1538916_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1538912_1540217_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540328_1540889_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541156_1541711_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542166_1542382_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542636_1545234_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545230_1546418_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547076_1547691_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547779_1548907_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1548918_1549824_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_023994753.1|1550574_1550730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1550716_1551667_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551848_1552601_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552669_1553329_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553325_1554054_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554066_1556346_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556370_1556574_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003811129.1|1556615_1557263_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	3.1e-13
WP_010930443.1|1557383_1558301_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558297_1559011_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559248_1560019_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560023_1560623_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560867_1562358_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562416_1562701_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010928840.1|1562697_1562826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930445.1|1562838_1562994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563266_1564193_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564329_1565070_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565236_1566613_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566794_1567700_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569351_1571154_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571271_1571922_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572020_1572971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572992_1574213_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574398_1575811_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575874_1576942_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811170.1|1576938_1578429_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578438_1579383_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579542_1580241_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580318_1581224_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581243_1582194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1618143	1681944	4105872	transposase	Tetraselmis_virus(100.0%)	49	NA	NA
WP_005013747.1|1618143_1619094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619152_1619926_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1619918_1621475_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621471_1622422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219857.1|1622408_1622564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926609.1|1628193_1628952_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628998_1629988_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630165_1631134_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632673_1633642_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633650_1634592_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635065_1636076_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636066_1637581_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637577_1638924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1638926_1639961_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640010_1641636_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642188_1643139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643243_1644191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644244_1646059_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646051_1646726_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646855_1649930_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649943_1650243_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650557_1651181_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651424_1652294_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652271_1653216_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930495.1|1653301_1654273_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930496.1|1654340_1655114_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655110_1656307_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656337_1657288_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657509_1658199_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658263_1659019_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659070_1660063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660072_1661026_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661141_1662104_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663505_1663934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663930_1664881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930504.1|1666334_1667522_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667525_1667906_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669624_1670596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670609_1671323_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671327_1672245_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672351_1672648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672746_1673697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1674855_1677789_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1677788_1678133_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1678129_1679758_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1679754_1680234_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_003810975.1|1680230_1680515_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1680511_1680838_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1680993_1681944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1695355	1787324	4105872	tRNA,transposase	Brevibacillus_phage(14.29%)	60	NA	NA
WP_014905945.1|1695355_1696306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1696329_1696794_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1696940_1698149_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810870.1|1698159_1698630_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1698748_1700038_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1702778_1703729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1703827_1704844_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_077274084.1|1705010_1706057_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1706053_1706680_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1706676_1707729_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1707778_1708549_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1708599_1709436_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1709631_1710372_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1710446_1711190_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1711851_1712625_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1713762_1715052_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1716662_1717910_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1717919_1719629_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1719625_1720564_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1720560_1721844_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1721847_1722330_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1722330_1723317_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1723489_1724209_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1724325_1725276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1728461_1729811_+	amidase	NA	NA	NA	NA	NA
WP_003816500.1|1729829_1730663_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1730796_1731672_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1731715_1735432_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1735440_1736070_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_019247159.1|1747342_1747780_+	protein FimA	NA	NA	NA	NA	NA
WP_010930611.1|1748029_1748764_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1748826_1751448_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_014486077.1|1751461_1752559_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1752551_1754306_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1755623_1756124_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_076879555.1|1756130_1757216_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1758661_1759153_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1759166_1760132_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247163.1|1760152_1760854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1762028_1762541_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1762619_1766243_+	5-oxoprolinase	NA	NA	NA	NA	NA
WP_010930622.1|1766256_1767288_-	peptidase C45	NA	NA	NA	NA	NA
WP_003809983.1|1768447_1769281_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_023853562.1|1769294_1770113_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1770214_1771207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1771424_1772201_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1772308_1773091_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1773217_1774804_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1774828_1775692_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1775899_1776676_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1776668_1777178_-	cyclophilin	NA	NA	NA	NA	NA
WP_010930629.1|1777306_1777990_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1778229_1779690_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1779709_1780354_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1780390_1781356_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_005013747.1|1781454_1782405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997643.1|1782503_1783454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443761.1|1783514_1784549_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_003810012.1|1784621_1785914_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1786307_1787324_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1832508	1891778	4105872	protease,tRNA,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1832508_1833459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833583_1834393_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1834448_1834607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1834593_1835544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836817_1838035_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839091_1839994_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840070_1840943_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841073_1841442_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841499_1842546_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842741_1843998_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844002_1845340_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845489_1846446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846548_1847481_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847596_1847917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1847918_1848269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848316_1849891_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849943_1850888_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850905_1851736_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851728_1853363_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853359_1854715_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855621_1857199_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857202_1858477_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858574_1858949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860664_1861798_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861835_1862441_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862437_1863256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863327_1865952_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865938_1866193_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866259_1866841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867144_1867405_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867570_1868194_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868193_1868967_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868963_1870172_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870197_1870671_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870744_1871695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871793_1872744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872842_1874192_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874957_1875713_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875805_1878688_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879010_1879436_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879463_1880612_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880608_1881115_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1881121_1882417_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1882457_1883762_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883763_1884402_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1884404_1885565_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885591_1886947_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886950_1888021_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888159_1888396_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888483_1889590_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889555_1890860_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1890878_1891778_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1902017	1959514	4105872	transposase	Staphylococcus_phage(16.67%)	58	NA	NA
WP_005013747.1|1902017_1902968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903066_1904017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1904003_1904204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1904216_1905302_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905317_1906079_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1906075_1906999_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1907097_1907622_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907630_1908374_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908469_1908709_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908722_1908875_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908960_1910451_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910542_1911481_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911477_1911654_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911656_1912319_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913940_1914084_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914080_1915055_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1915091_1915235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1915221_1916172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916168_1917443_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1917540_1918740_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918736_1919390_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919386_1920823_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920810_1921170_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930768.1|1923089_1924955_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925212_1926733_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926820_1927471_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928419_1929715_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929736_1930621_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930719_1931595_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931584_1931941_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|1932014_1933046_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933175_1933355_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933452_1933977_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933987_1934824_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934936_1935308_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935304_1935856_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1935871_1937563_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937611_1938292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938539_1939004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939173_1940103_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940115_1940763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940836_1942654_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942737_1943688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|1944192_1944354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1944340_1945291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1945309_1945657_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1945685_1947125_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1947143_1947539_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1947713_1948322_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1948334_1949153_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1949104_1950079_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1950107_1951169_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1951165_1953382_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1953395_1953854_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1954011_1954356_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1954512_1955418_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1955504_1956518_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1958497_1959514_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	1975064	2039432	4105872	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|1975064_1976015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|1976001_1976193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1976236_1977187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977285_1978251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978388_1979288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1981882_1983370_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983380_1984577_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984649_1985969_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985965_1986841_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|1986871_1988041_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988037_1988352_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988373_1989096_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989095_1989914_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989918_1990446_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|1990451_1991717_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992066_1993206_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993283_1994156_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995026_1995977_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995936_1996572_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996931_1998254_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|1998482_1999394_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2000818_2001391_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001430_2003260_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003222_2004281_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004318_2004780_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004864_2005611_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007101_2010332_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010398_2011730_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011982_2012357_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012459_2013638_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013648_2014239_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014349_2015156_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2015181_2015976_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016976_2017951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018109_2018622_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018778_2019750_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021493_2022300_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2022296_2023433_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023548_2024313_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024426_2025197_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2025281_2026493_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026541_2026916_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027016_2028279_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028275_2029133_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029305_2030307_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030758_2031709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033224_2034424_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034792_2035029_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035092_2035260_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035373_2037269_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037432_2038383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038481_2039432_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	2170964	2220615	4105872	tRNA,transposase	Synechococcus_phage(14.29%)	45	NA	NA
WP_005012067.1|2170964_2171915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172013_2174008_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174067_2175033_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175022_2177884_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2177886_2178393_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178497_2179706_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179707_2180646_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180807_2181281_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181277_2182228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879558.1|2182214_2182394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004566334.1|2182338_2182779_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2182907_2184137_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184175_2184997_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185050_2186202_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186293_2186782_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_010930534.1|2189308_2191882_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191952_2194526_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194791_2194992_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195023_2195185_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195242_2195581_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195729_2196680_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274081.1|2196777_2197497_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_029443816.1|2197573_2198122_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198103_2200119_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200301_2201051_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201063_2201927_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201930_2203346_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203479_2204208_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204346_2204547_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204722_2205121_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205144_2206545_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206663_2207416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207704_2208382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208408_2209188_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209184_2210069_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_077274094.1|2210086_2210776_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_010930526.1|2210850_2211609_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211734_2212382_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212649_2213666_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213763_2214804_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214938_2216231_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217590_2217974_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217991_2218579_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218616_2219567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219664_2220615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	2577432	2643932	4105872	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577432_2578383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578752_2579325_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579327_2580338_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580330_2580831_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580841_2581183_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581194_2581986_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582002_2582272_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582294_2583083_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583129_2584146_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584362_2585805_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585983_2587603_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587723_2589544_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589622_2591155_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591188_2592835_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592904_2593927_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593944_2595078_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595080_2595770_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595769_2596555_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596598_2597363_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597401_2598823_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2598888_2599593_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599640_2600060_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600072_2600480_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600663_2601374_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601500_2601791_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601808_2602291_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606796_2607951_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608256_2609273_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609519_2610308_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610374_2611055_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611051_2611822_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611920_2612871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612926_2613844_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2613854_2615033_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615052_2616048_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617636_2618245_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618232_2619273_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619290_2620253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620249_2621443_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621439_2622237_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622262_2623249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623267_2625307_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625508_2626189_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626202_2627114_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627110_2627689_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627827_2628733_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628740_2632160_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632147_2634748_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635703_2636336_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636729_2637488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637484_2638687_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2638874_2639825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640732_2641878_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930309.1|2641897_2642620_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642736_2642916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642981_2643932_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	2672046	2709458	4105872	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2672046_2672997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2673095_2674046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674138_2674678_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674784_2675129_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675186_2676635_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676822_2677158_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678785_2679964_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680046_2680547_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_077274085.1|2680572_2681358_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681369_2681834_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003811307.1|2681830_2682124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682120_2682897_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682925_2683753_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2683878_2684349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684475_2685369_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685416_2686598_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686610_2687426_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687559_2688087_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688083_2688581_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688728_2689106_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689327_2690278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690376_2690988_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691222_2692350_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692460_2693549_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693601_2694453_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694472_2695354_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695530_2696844_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697054_2697888_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2697884_2698466_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_124740682.1|2698590_2698833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2698819_2699770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699785_2700901_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701003_2701930_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701929_2703168_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703164_2703932_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703932_2704634_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704715_2705162_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706051_2706690_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707458_2708409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708507_2709458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	2814916	2872074	4105872	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2814916_2815867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817028_2817535_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817531_2818296_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818311_2818596_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818660_2819650_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819821_2820751_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820722_2821409_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821442_2821988_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822032_2823298_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823294_2824197_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825378_2826323_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826417_2827935_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827976_2829605_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829712_2830594_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833706_2834081_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834105_2834444_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834487_2836122_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836160_2837507_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837614_2839036_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839105_2839690_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839792_2840743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840877_2841984_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841994_2843092_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843236_2844442_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844448_2844970_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844966_2845458_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845454_2845706_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845686_2846172_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846307_2849769_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2849765_2850671_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850680_2851112_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851358_2851862_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2851873_2853340_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853414_2854290_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854286_2855294_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855761_2856067_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856157_2856748_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856938_2857955_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858146_2860483_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860565_2861000_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861098_2862049_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862147_2863098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863094_2863889_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863920_2864625_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864699_2865500_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865496_2865904_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865900_2866542_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2866534_2868556_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869795_2871127_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871123_2872074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	2886548	2927906	4105872	protease,transposase	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
WP_010930800.1|2886548_2887499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2887829_2891651_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891807_2892476_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892480_2894154_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894172_2895492_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2895496_2897848_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2897867_2900036_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900032_2905222_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905311_2905626_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905853_2906099_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906193_2906712_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906811_2908017_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908132_2909530_-	chloride channel protein	NA	NA	NA	NA	NA
WP_101631021.1|2909646_2910192_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910296_2911688_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911855_2912806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913086_2913707_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913703_2914117_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914113_2915157_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915212_2915401_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915410_2916175_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916265_2916922_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917013_2917772_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917797_2919399_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919599_2920604_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920704_2920968_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921085_2921862_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922452_2923403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925786_2926899_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926955_2927906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	2958290	3001980	4105872	transposase	Planktothrix_phage(33.33%)	42	NA	NA
WP_005012067.1|2958290_2959241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2959227_2959473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959361_2960258_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962535_2964761_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964925_2966014_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965970_2966624_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966671_2967469_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968000_2968951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969031_2970180_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970236_2971187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2971173_2971392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2971285_2971591_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971619_2972054_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972055_2973300_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973296_2974007_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974021_2974933_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975295_2975700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975696_2976155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976161_2977070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977066_2977933_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977919_2978747_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978757_2979885_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980962_2982201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982242_2983505_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983511_2984264_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984315_2984501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984776_2985241_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985272_2985932_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986076_2988185_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988181_2989132_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989234_2989855_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989958_2990699_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991833_2992958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993003_2993372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993613_2994564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995599_2996142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2996334_2996541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996527_2997478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997474_2998440_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998509_2999346_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_076879583.1|2999822_3000968_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001029_3001980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	3401467	3465296	4105872	tRNA,transposase	Staphylococcus_phage(11.11%)	50	NA	NA
WP_005012067.1|3401467_3402418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3402404_3402581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101631016.1|3402499_3403129_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931344.1|3403183_3404278_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404270_3405605_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405558_3406242_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406267_3407431_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407427_3408429_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408428_3409301_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409297_3410047_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410043_3410835_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410831_3411971_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3412279_3413032_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413065_3413848_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413851_3414241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415380_3416244_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416279_3417368_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_080501793.1|3418300_3418714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3418667_3421646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422572_3423451_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425399_3426350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426346_3426814_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426856_3427627_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427647_3428448_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_003814739.1|3429961_3430747_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430986_3432003_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432110_3432503_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432640_3433321_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3433325_3434324_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434392_3435343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3436847_3437549_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3437548_3438973_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3440042_3441383_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3441498_3443262_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443373_3444252_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444364_3445180_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445183_3445435_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3445519_3446536_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446866_3447088_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_101631017.1|3447733_3449353_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	28.0	5.4e-38
WP_019247693.1|3449447_3450365_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450862_3452071_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452150_3453722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453839_3454775_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454963_3455908_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3455976_3456192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3456475_3462193_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462198_3463326_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463381_3464008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464279_3465296_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP018040	Bordetella pertussis strain J304 chromosome, complete genome	4105872	3469710	3587597	4105872	tRNA,transposase	Acinetobacter_phage(22.22%)	99	NA	NA
WP_019247745.1|3469710_3470583_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470851_3472072_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472068_3472728_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472799_3473432_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473461_3473980_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473990_3475100_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475146_3476001_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476002_3476905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478127_3479078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3480832_3481822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481997_3482786_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482782_3483814_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483832_3484396_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484450_3485971_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486234_3486939_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486946_3487684_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487789_3488164_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488206_3489496_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489492_3490662_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490658_3491498_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491557_3492493_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492505_3493456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3493554_3494517_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3494548_3494908_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495032_3495935_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495936_3497709_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497743_3498520_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499843_3500794_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3501645_3501966_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3502038_3502920_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3503036_3503279_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3503416_3503887_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3503899_3504439_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3504473_3506015_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3506113_3507019_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3507061_3508462_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3508471_3508894_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3509076_3509961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3510036_3511113_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3511419_3513522_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3513564_3515634_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3515732_3516683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516811_3517945_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517988_3518894_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518896_3520597_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520593_3521514_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3521521_3522499_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522557_3523592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3525566_3525803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525929_3526793_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526881_3527703_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527782_3528520_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3528516_3529509_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529622_3530285_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530329_3531478_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533801_3534752_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535092_3536043_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536140_3537091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537387_3537885_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537927_3539703_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3539749_3540577_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540583_3541318_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542487_3543282_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543571_3544162_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544195_3545524_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545598_3546744_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546855_3547854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547816_3548251_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549766_3550651_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550647_3551853_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551849_3552710_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552822_3554613_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554653_3555319_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555319_3555628_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555793_3557080_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3558513_3559464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561415_3562630_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562735_3563725_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563721_3564330_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564342_3564972_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564968_3565589_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565620_3566412_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3567254_3567719_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567737_3568664_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568717_3570004_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570934_3571807_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571803_3572754_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572851_3573802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247263.1|3574262_3574652_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3574668_3577050_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_023853194.1|3577042_3578419_-	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929960.1|3578434_3579430_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3580680_3581241_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3581245_3581572_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_010929958.1|3581608_3582421_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3582431_3583514_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3583600_3584875_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_010929956.1|3585597_3586548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3586646_3587597_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
