assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_002859745.1_ASM285974v1	NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	1	644868-644977	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	GGGGACAGATACCGTCTTGGCCGTCAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA|138aa|down_8|NZ_CP018037.1_658263_658677_+	NA|272aa|up_9|NZ_CP018037.1_631796_632612_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|293aa|up_8|NZ_CP018037.1_632724_633603_-	PRK00030, minC, septum site-determining protein MinC	NA|588aa|up_7|NZ_CP018037.1_633714_635478_-	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional	NA|447aa|up_6|NZ_CP018037.1_635593_636934_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|475aa|up_5|NZ_CP018037.1_638003_639428_-	PRK09467, envZ, osmolarity sensor protein; Provisional	NA|234aa|up_4|NZ_CP018037.1_639427_640129_-	PRK09468, ompR, osmolarity response regulator; Provisional	NA|317aa|up_3|NZ_CP018037.1_641633_642584_+	pfam00665, rve, Integrase core domain	NA|333aa|up_2|NZ_CP018037.1_642652_643651_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|227aa|up_1|NZ_CP018037.1_643655_644336_-	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|131aa|up_0|NZ_CP018037.1_644473_644866_+	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_0|NZ_CP018037.1_646229_647015_-	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI	NA|470aa|down_1|NZ_CP018037.1_647109_648519_-	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|267aa|down_2|NZ_CP018037.1_648529_649330_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|257aa|down_3|NZ_CP018037.1_649350_650121_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|156aa|down_4|NZ_CP018037.1_650163_650631_+	PRK00203, rnhA, ribonuclease H; Reviewed	NA|317aa|down_5|NZ_CP018037.1_650627_651578_-	pfam00665, rve, Integrase core domain	NA|293aa|down_6|NZ_CP018037.1_653526_654405_-	pfam00487, FA_desaturase, Fatty acid desaturase	NA|993aa|down_7|NZ_CP018037.1_655331_658310_-	pfam17936, Big_6, Bacterial Ig domain	NA|138aa|down_8|NZ_CP018037.1_658263_658677_+	NA	NA|317aa|down_9|NZ_CP018037.1_658663_659614_+	pfam00665, rve, Integrase core domain
GCF_002859745.1_ASM285974v1	NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	2	2925767-2925883	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	TTTTTTGCCTTGGGGCGGCCCGGCGGCAAAAAAA	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA|59aa|up_0|NZ_CP018037.1_2925549_2925726_-,NA|101aa|down_9|NZ_CP018037.1_2938566_2938869_+	NA|899aa|up_9|NZ_CP018037.1_2908105_2910802_+	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional	NA|761aa|up_8|NZ_CP018037.1_2910956_2913239_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|211aa|up_7|NZ_CP018037.1_2913403_2914036_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|317aa|up_6|NZ_CP018037.1_2914134_2915085_+	pfam00665, rve, Integrase core domain	NA|185aa|up_5|NZ_CP018037.1_2915131_2915686_-	PRK01885, greB, transcription elongation factor GreB; Reviewed	NA|282aa|up_4|NZ_CP018037.1_2915753_2916599_-	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	NA|323aa|up_3|NZ_CP018037.1_2916668_2917637_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|599aa|up_2|NZ_CP018037.1_2917636_2919433_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|1309aa|up_1|NZ_CP018037.1_2921332_2925259_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|59aa|up_0|NZ_CP018037.1_2925549_2925726_-	NA	NA|1077aa|down_0|NZ_CP018037.1_2925994_2929225_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_1|NZ_CP018037.1_2929506_2930334_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_2|NZ_CP018037.1_2930367_2931063_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_3|NZ_CP018037.1_2931055_2932336_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_4|NZ_CP018037.1_2932345_2933323_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_5|NZ_CP018037.1_2933304_2935005_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_6|NZ_CP018037.1_2935107_2936212_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_7|NZ_CP018037.1_2936241_2936997_+	PRK07023, PRK07023, SDR family oxidoreductase	NA|507aa|down_8|NZ_CP018037.1_2937003_2938524_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|101aa|down_9|NZ_CP018037.1_2938566_2938869_+	NA
GCF_002859745.1_ASM285974v1	NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	3	3640642-3640735	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG	Unclear	GTGCCTGTCCCGGCGGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|391aa|up_9|NZ_CP018037.1_3629448_3630621_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_8|NZ_CP018037.1_3630746_3631724_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_7|NZ_CP018037.1_3631734_3632706_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_6|NZ_CP018037.1_3632772_3633558_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_5|NZ_CP018037.1_3633550_3634783_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_4|NZ_CP018037.1_3634978_3635734_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_3|NZ_CP018037.1_3635844_3636363_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|467aa|up_2|NZ_CP018037.1_3638151_3639552_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|115aa|up_1|NZ_CP018037.1_3639651_3639996_+	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|157aa|up_0|NZ_CP018037.1_3640084_3640555_+	pfam00582, Usp, Universal stress protein family	NA|133aa|down_0|NZ_CP018037.1_3640965_3641364_+	PRK00007, PRK00007, elongation factor G; Reviewed	NA|317aa|down_1|NZ_CP018037.1_3641495_3642446_-	pfam00665, rve, Integrase core domain	DEDDh|245aa|down_2|NZ_CP018037.1_3644890_3645625_+	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional	NA|60aa|down_3|NZ_CP018037.1_3646034_3646214_+	pfam04391, DUF533, Protein of unknown function (DUF533)	NA|438aa|down_4|NZ_CP018037.1_3646404_3647718_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]	NA|504aa|down_5|NZ_CP018037.1_3647733_3649245_-	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|402aa|down_6|NZ_CP018037.1_3649241_3650447_-	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	NA|326aa|down_7|NZ_CP018037.1_3650642_3651620_-	pfam00665, rve, Integrase core domain	NA|165aa|down_8|NZ_CP018037.1_3651712_3652207_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|353aa|down_9|NZ_CP018037.1_3652336_3653395_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCF_002859745.1_ASM285974v1	NZ_CP018037	Bordetella pertussis strain J094 chromosome, complete genome	4	3823141-3823225	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG	NA,NA	NA|585aa|up_9|NZ_CP018037.1_3811098_3812853_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|300aa|up_8|NZ_CP018037.1_3812959_3813859_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP018037.1_3813923_3814907_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP018037.1_3815042_3816023_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP018037.1_3816039_3817431_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP018037.1_3817582_3818119_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP018037.1_3818049_3819435_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP018037.1_3819577_3820216_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP018037.1_3820302_3822192_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP018037.1_3822188_3823130_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP018037.1_3823235_3824285_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP018037.1_3824537_3825239_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP018037.1_3825235_3825934_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP018037.1_3825934_3827290_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP018037.1_3827286_3827778_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP018037.1_3827796_3828753_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|701aa|down_6|NZ_CP018037.1_3830163_3832266_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|348aa|down_7|NZ_CP018037.1_3832436_3833480_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_8|NZ_CP018037.1_3833523_3834267_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|137aa|down_9|NZ_CP018037.1_3835288_3835699_-	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase
